Wall clock time and date at job start Wed Apr 1 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 H 1.09001 * 109.47029 * 305.00346 * 3 2 1 5 5 C 1.50703 * 109.46936 * 185.00117 * 3 2 1 6 6 H 1.07999 * 119.99628 * 240.00409 * 5 3 2 7 7 C 1.37877 * 120.00164 * 60.00144 * 5 3 2 8 8 N 1.31510 * 119.99885 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47287 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46901 * 120.00197 * 9 7 5 12 12 H 1.48495 * 109.47608 * 239.99848 * 9 7 5 13 13 N 1.46500 * 109.46899 * 64.99940 * 3 2 1 14 14 C 1.34773 * 120.00209 * 275.00170 * 13 3 2 15 15 O 1.21284 * 119.99909 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00037 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.85765 * 303.78851 * 16 14 13 18 18 C 1.54635 * 110.96714 * 67.61939 * 16 14 13 19 19 C 1.51289 * 104.25460 * 142.70240 * 18 16 14 20 20 O 1.21284 * 124.94465 * 164.00869 * 19 18 16 21 21 N 1.34422 * 110.11145 * 344.14003 * 19 18 16 22 22 C 1.39926 * 124.34804 * 179.43870 * 21 19 18 23 23 C 1.38888 * 120.06974 * 354.15946 * 22 21 19 24 24 C 1.38095 * 119.92802 * 180.27215 * 23 22 21 25 25 C 1.38302 * 120.06783 * 359.72647 * 24 23 22 26 26 C 1.50705 * 119.92652 * 180.02562 * 25 24 23 27 27 C 1.38257 * 120.14606 * 0.04366 * 25 24 23 28 28 C 1.50698 * 119.96676 * 179.97438 * 27 25 24 29 29 C 1.38136 * 120.06633 * 359.95304 * 27 25 24 30 30 C 1.46765 * 111.30229 * 359.17492 * 21 19 18 31 31 H 1.08994 * 109.47290 * 299.99717 * 1 2 3 32 32 H 1.09004 * 109.47134 * 59.99810 * 1 2 3 33 33 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47344 * 240.00069 * 2 1 3 35 35 H 1.08995 * 109.47317 * 120.00135 * 2 1 3 36 36 H 0.97003 * 120.00440 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99528 * 94.99575 * 13 3 2 38 38 H 1.09004 * 110.48270 * 261.59495 * 18 16 14 39 39 H 1.08994 * 110.48758 * 24.10789 * 18 16 14 40 40 H 1.08000 * 120.03773 * 0.03969 * 23 22 21 41 41 H 1.07994 * 119.96501 * 179.74627 * 24 23 22 42 42 H 1.08993 * 109.47474 * 270.02148 * 26 25 24 43 43 H 1.08995 * 109.46985 * 30.02457 * 26 25 24 44 44 H 1.09001 * 109.46787 * 150.02238 * 26 25 24 45 45 H 1.09001 * 109.46981 * 269.97409 * 28 27 25 46 46 H 1.08994 * 109.47127 * 29.97839 * 28 27 25 47 47 H 1.09002 * 109.47082 * 149.97605 * 28 27 25 48 48 H 1.08000 * 120.03398 * 179.97438 * 29 27 25 49 49 H 1.09004 * 110.24799 * 136.27840 * 30 21 19 50 50 H 1.08994 * 110.24683 * 258.28074 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0048 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4969 -0.5176 -1.4631 12 1 6.3990 1.6167 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6326 0.4341 16 6 0.0366 3.3385 2.6546 17 1 0.1244 2.6512 3.4959 18 6 0.8749 4.6160 2.8927 19 6 -0.1018 5.5927 3.5099 20 8 0.2081 6.6085 4.0957 21 7 -1.3630 5.1695 3.3170 22 6 -2.5006 5.8426 3.7760 23 6 -2.3668 6.9636 4.5850 24 6 -3.4916 7.6224 5.0409 25 6 -4.7501 7.1703 4.6882 26 6 -5.9754 7.8920 5.1871 27 6 -4.8866 6.0575 3.8791 28 6 -6.2599 5.5680 3.4977 29 6 -3.7654 5.3942 3.4197 30 6 -1.3937 3.9139 2.5577 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8292 -0.0612 -2.9499 37 1 2.2719 2.1230 1.9978 38 1 1.6973 4.4103 3.5778 39 1 1.2547 5.0047 1.9479 40 1 -1.3843 7.3175 4.8602 41 1 -3.3883 8.4917 5.6734 42 1 -6.2872 7.4632 6.1394 43 1 -5.7448 8.9486 5.3226 44 1 -6.7806 7.7862 4.4601 45 1 -6.6070 4.8467 4.2376 46 1 -6.9492 6.4116 3.4614 47 1 -6.2168 5.0917 2.5183 48 1 -3.8727 4.5247 2.7881 49 1 -2.1095 3.2219 3.0017 50 1 -1.6522 4.1087 1.5169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362319670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:32 Heat of formation + Delta-G solvation = -54.344762 kcal Electronic energy + Delta-G solvation = -30026.453477 eV Core-core repulsion = 26017.987521 eV Total energy + Delta-G solvation = -4008.465956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37469 -39.53826 -38.84654 -36.63465 -35.18685 -34.22057 -32.61064 -32.35939 -31.36964 -30.57227 -28.15645 -27.42167 -27.21204 -26.18305 -23.87985 -22.86619 -22.02612 -21.74051 -20.08245 -19.48502 -19.38469 -17.78506 -17.41316 -16.61045 -16.07404 -15.65147 -15.56862 -15.17145 -14.93161 -14.83485 -14.51949 -14.42297 -14.14554 -13.80349 -13.62393 -13.48339 -13.16413 -13.03831 -12.92918 -12.74169 -12.69697 -12.24269 -12.17960 -12.07281 -11.67597 -11.58569 -11.45768 -11.35621 -11.31614 -11.20107 -11.01812 -10.90478 -10.38423 -10.26618 -10.09166 -9.83123 -9.71528 -9.17908 -9.10899 -8.89303 -8.57880 -7.97287 -7.91023 -6.19341 -4.29048 1.09607 1.24392 2.42120 2.60696 3.11060 3.19529 3.28152 3.30080 3.63648 3.75372 4.10412 4.26517 4.33371 4.61771 4.67902 4.73880 4.83136 4.87705 4.91976 5.10919 5.12561 5.26341 5.30075 5.32768 5.35186 5.43352 5.48731 5.55634 5.56719 5.62832 5.66806 5.72049 5.82360 5.91784 6.11178 6.26831 6.30930 6.36287 6.42262 6.53337 6.56644 6.91501 6.94481 6.95751 7.09818 7.25351 7.31845 7.52924 7.63500 7.80722 7.87918 8.09796 8.51308 8.67803 8.95917 9.38488 10.85900 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002258 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.301634 B =12397.416103 C =13422.241951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.542 6.542 16 C -0.125 4.125 17 H 0.114 0.886 18 C -0.141 4.141 19 C 0.522 3.478 20 O -0.512 6.512 21 N -0.558 5.558 22 C 0.169 3.831 23 C -0.160 4.160 24 C -0.089 4.089 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.061 4.061 28 C -0.117 4.117 29 C -0.154 4.154 30 C 0.111 3.889 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.390 0.610 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.127 0.873 49 H 0.089 0.911 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 8.819 13.952 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.421 6.421 16 C -0.147 4.147 17 H 0.132 0.868 18 C -0.182 4.182 19 C 0.312 3.688 20 O -0.388 6.388 21 N -0.281 5.281 22 C 0.075 3.925 23 C -0.180 4.180 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.168 4.168 27 C -0.061 4.061 28 C -0.173 4.173 29 C -0.175 4.175 30 C -0.011 4.011 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.171 0.829 41 H 0.142 0.858 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.145 0.855 49 H 0.108 0.892 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.345 9.202 13.367 22.334 hybrid contribution 1.394 -0.236 0.183 1.425 sum -13.951 8.966 13.550 21.416 Atomic orbital electron populations 1.21838 0.98336 0.98135 1.01133 1.21944 0.92610 0.99750 1.02421 1.18841 0.94354 0.89213 0.80757 0.93176 1.21248 0.90608 1.39138 1.06358 0.91962 1.24883 0.98650 0.94749 0.95387 1.69892 1.35101 1.37517 1.09332 0.86405 0.84799 0.77800 0.78174 1.19711 1.20879 1.20873 1.46487 1.14227 1.55289 1.18763 1.19713 0.83225 0.79555 0.87930 1.90697 1.51390 1.59946 1.40026 1.22312 0.95137 0.97438 0.99849 0.86760 1.22345 0.98073 0.93381 1.04375 1.21034 0.83226 0.85986 0.78602 1.90613 1.80951 1.25626 1.41641 1.45882 1.05215 1.24418 1.52579 1.17758 0.85504 0.93312 0.95903 1.21593 1.01337 0.95746 0.99288 1.20884 0.91293 0.99443 0.99159 1.19712 0.95162 0.96935 1.00105 1.20791 0.95374 0.99614 1.01057 1.19492 0.95015 0.94828 0.96790 1.20861 0.93165 1.01478 1.01825 1.20673 0.90246 1.02383 1.04151 1.22185 0.96954 0.83641 0.98314 0.94372 0.93115 0.95799 0.88211 0.94966 0.92556 0.77747 0.86602 0.86482 0.82879 0.85815 0.91491 0.91849 0.91349 0.91057 0.91059 0.91437 0.85468 0.89238 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.25 2.24 -69.08 -0.15 6.10 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.30 8.73 -34.44 -0.30 -13.60 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.75 11.29 55.43 0.63 -23.12 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.70 -12.66 5.02 -54.93 -0.28 -12.93 16 14 C 0.51 8.51 5.63 -10.99 -0.06 8.44 16 15 O -0.54 -10.86 12.64 5.55 0.07 -10.79 16 16 C -0.13 -1.49 3.55 -90.13 -0.32 -1.81 16 17 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 18 C -0.14 -1.65 6.41 -26.73 -0.17 -1.82 16 19 C 0.52 7.20 7.92 -10.86 -0.09 7.12 16 20 O -0.51 -8.32 14.82 5.55 0.08 -8.24 16 21 N -0.56 -7.20 3.14 -112.27 -0.35 -7.56 16 22 C 0.17 2.20 6.60 -83.70 -0.55 1.65 16 23 C -0.16 -2.08 9.28 -39.39 -0.37 -2.45 16 24 C -0.09 -0.97 9.69 -39.61 -0.38 -1.36 16 25 C -0.12 -1.18 5.88 -104.59 -0.62 -1.79 16 26 C -0.11 -0.79 9.60 36.01 0.35 -0.44 16 27 C -0.06 -0.62 5.88 -104.65 -0.62 -1.23 16 28 C -0.12 -0.87 9.60 36.00 0.35 -0.52 16 29 C -0.15 -1.76 9.06 -39.39 -0.36 -2.11 16 30 C 0.11 1.32 5.63 -3.12 -0.02 1.30 16 31 H 0.04 0.74 5.65 -51.93 -0.29 0.44 16 32 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.39 6.04 8.54 -40.82 -0.35 5.69 16 38 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 1.47 7.89 -51.93 -0.41 1.06 16 40 H 0.15 2.21 5.26 -52.49 -0.28 1.93 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 5.94 -51.93 -0.31 0.11 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 47 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 48 H 0.13 1.30 7.01 -52.49 -0.37 0.93 16 49 H 0.09 0.91 7.70 -51.93 -0.40 0.51 16 50 H 0.10 1.39 6.96 -51.93 -0.36 1.03 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -30.17 394.10 -9.69 -39.86 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.52 Total: 8.39 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.23 Total: -6.47 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.00 Total: -43.61 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.17 -9.69 -39.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362319670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.484 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds