Wall clock time and date at job start Wed Apr 1 2020 03:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 H 1.09001 * 109.47029 * 305.00346 * 3 2 1 5 5 C 1.50703 * 109.46936 * 185.00117 * 3 2 1 6 6 H 1.07999 * 119.99628 * 240.00409 * 5 3 2 7 7 C 1.37877 * 120.00164 * 60.00144 * 5 3 2 8 8 N 1.31510 * 119.99885 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47287 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46901 * 120.00197 * 9 7 5 12 12 H 1.48495 * 109.47608 * 239.99848 * 9 7 5 13 13 N 1.46500 * 109.46899 * 64.99940 * 3 2 1 14 14 C 1.34773 * 120.00209 * 275.00170 * 13 3 2 15 15 O 1.21284 * 119.99909 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00037 * 180.02562 * 14 13 3 17 17 H 1.08997 * 110.85765 * 303.78851 * 16 14 13 18 18 C 1.54635 * 110.96714 * 67.61939 * 16 14 13 19 19 C 1.51289 * 104.25460 * 142.70240 * 18 16 14 20 20 O 1.21284 * 124.94465 * 164.00869 * 19 18 16 21 21 N 1.34422 * 110.11145 * 344.14003 * 19 18 16 22 22 C 1.39926 * 124.34804 * 179.43870 * 21 19 18 23 23 C 1.38888 * 120.06974 * 354.15946 * 22 21 19 24 24 C 1.38095 * 119.92802 * 180.27215 * 23 22 21 25 25 C 1.38302 * 120.06783 * 359.72647 * 24 23 22 26 26 C 1.50705 * 119.92652 * 180.02562 * 25 24 23 27 27 C 1.38257 * 120.14606 * 0.04366 * 25 24 23 28 28 C 1.50698 * 119.96676 * 179.97438 * 27 25 24 29 29 C 1.38136 * 120.06633 * 359.95304 * 27 25 24 30 30 C 1.46765 * 111.30229 * 359.17492 * 21 19 18 31 31 H 1.08994 * 109.47290 * 299.99717 * 1 2 3 32 32 H 1.09004 * 109.47134 * 59.99810 * 1 2 3 33 33 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47344 * 240.00069 * 2 1 3 35 35 H 1.08995 * 109.47317 * 120.00135 * 2 1 3 36 36 H 0.97003 * 120.00440 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99528 * 94.99575 * 13 3 2 38 38 H 1.09004 * 110.48270 * 261.59495 * 18 16 14 39 39 H 1.08994 * 110.48758 * 24.10789 * 18 16 14 40 40 H 1.08000 * 120.03773 * 0.03969 * 23 22 21 41 41 H 1.07994 * 119.96501 * 179.74627 * 24 23 22 42 42 H 1.08993 * 109.47474 * 270.02148 * 26 25 24 43 43 H 1.08995 * 109.46985 * 30.02457 * 26 25 24 44 44 H 1.09001 * 109.46787 * 150.02238 * 26 25 24 45 45 H 1.09001 * 109.46981 * 269.97409 * 28 27 25 46 46 H 1.08994 * 109.47127 * 29.97839 * 28 27 25 47 47 H 1.09002 * 109.47082 * 149.97605 * 28 27 25 48 48 H 1.08000 * 120.03398 * 179.97438 * 29 27 25 49 49 H 1.09004 * 110.24799 * 136.27840 * 30 21 19 50 50 H 1.08994 * 110.24683 * 258.28074 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0048 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4969 -0.5176 -1.4631 12 1 6.3990 1.6167 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6326 0.4341 16 6 0.0366 3.3385 2.6546 17 1 0.1244 2.6512 3.4959 18 6 0.8749 4.6160 2.8927 19 6 -0.1018 5.5927 3.5099 20 8 0.2081 6.6085 4.0957 21 7 -1.3630 5.1695 3.3170 22 6 -2.5006 5.8426 3.7760 23 6 -2.3668 6.9636 4.5850 24 6 -3.4916 7.6224 5.0409 25 6 -4.7501 7.1703 4.6882 26 6 -5.9754 7.8920 5.1871 27 6 -4.8866 6.0575 3.8791 28 6 -6.2599 5.5680 3.4977 29 6 -3.7654 5.3942 3.4197 30 6 -1.3937 3.9139 2.5577 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8292 -0.0612 -2.9499 37 1 2.2719 2.1230 1.9978 38 1 1.6973 4.4103 3.5778 39 1 1.2547 5.0047 1.9479 40 1 -1.3843 7.3175 4.8602 41 1 -3.3883 8.4917 5.6734 42 1 -6.2872 7.4632 6.1394 43 1 -5.7448 8.9486 5.3226 44 1 -6.7806 7.7862 4.4601 45 1 -6.6070 4.8467 4.2376 46 1 -6.9492 6.4116 3.4614 47 1 -6.2168 5.0917 2.5183 48 1 -3.8727 4.5247 2.7881 49 1 -2.1095 3.2219 3.0017 50 1 -1.6522 4.1087 1.5169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362319670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:30 Heat of formation + Delta-G solvation = -71.000109 kcal Electronic energy + Delta-G solvation = -30027.175707 eV Core-core repulsion = 26017.987521 eV Total energy + Delta-G solvation = -4009.188186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.40456 -40.71711 -39.93430 -37.79873 -36.82588 -35.17363 -34.25854 -33.30610 -32.77028 -31.72371 -29.17782 -28.88651 -28.20170 -27.07772 -25.30078 -24.29683 -22.94796 -22.70277 -21.63562 -20.95174 -20.40188 -19.11768 -18.42388 -18.01711 -17.23011 -17.19730 -16.61323 -16.42712 -16.25911 -15.94084 -15.74713 -15.30204 -15.17644 -15.01811 -14.68384 -14.58013 -14.47912 -14.16572 -13.99879 -13.72008 -13.55105 -13.39377 -13.36677 -13.13763 -12.95320 -12.90720 -12.82815 -12.69670 -12.52267 -12.43044 -12.17159 -12.11721 -12.00222 -11.98974 -11.53541 -11.00804 -10.99003 -10.92324 -10.60458 -10.47177 -9.73144 -9.60431 -8.81708 -8.14272 -6.30272 0.20332 0.38827 1.40661 1.44396 1.47156 1.57217 1.62358 1.78436 2.34540 2.55057 2.78586 3.07824 3.15754 3.27445 3.72854 3.82415 3.87411 3.92988 4.10420 4.21043 4.22938 4.35207 4.39273 4.47601 4.54276 4.55591 4.63742 4.70490 4.75080 4.78938 4.82104 4.83541 4.85222 4.92160 4.98109 5.12101 5.12243 5.22254 5.27883 5.32517 5.48198 5.48611 5.55990 5.60894 5.65232 5.74453 5.84647 5.95244 5.95563 6.10264 6.21613 6.78808 6.84118 6.99242 7.36523 7.58294 8.90798 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002258 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.301634 B =12397.416103 C =13422.241951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.288 1.288 13 N -0.698 5.698 14 C 0.514 3.486 15 O -0.577 6.577 16 C -0.107 4.107 17 H 0.152 0.848 18 C -0.134 4.134 19 C 0.516 3.484 20 O -0.544 6.544 21 N -0.556 5.556 22 C 0.144 3.856 23 C -0.181 4.181 24 C -0.095 4.095 25 C -0.119 4.119 26 C -0.111 4.111 27 C -0.065 4.065 28 C -0.116 4.116 29 C -0.160 4.160 30 C 0.114 3.886 31 H 0.050 0.950 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.406 0.594 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.136 0.864 49 H 0.112 0.888 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.038 8.802 16.088 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.346 5.346 14 C 0.300 3.700 15 O -0.458 6.458 16 C -0.128 4.128 17 H 0.169 0.831 18 C -0.174 4.174 19 C 0.306 3.694 20 O -0.422 6.422 21 N -0.278 5.278 22 C 0.050 3.950 23 C -0.201 4.201 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.167 4.167 27 C -0.066 4.066 28 C -0.172 4.172 29 C -0.181 4.181 30 C -0.008 4.008 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.241 0.759 38 H 0.161 0.839 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.154 0.846 49 H 0.130 0.870 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.373 9.191 15.540 24.373 hybrid contribution 1.587 -0.161 -0.489 1.669 sum -14.786 9.031 15.051 22.950 Atomic orbital electron populations 1.21681 0.96730 0.99162 1.00504 1.21790 0.93970 0.99116 1.01299 1.18366 0.93436 0.89240 0.81447 0.98138 1.21626 0.91645 1.38444 1.06453 0.90890 1.25706 1.02819 0.94649 0.95282 1.70043 1.36774 1.38552 1.09881 0.85411 0.79819 0.77663 0.78120 1.18420 1.20717 1.21384 1.46197 1.15336 1.55470 1.17642 1.20362 0.82057 0.78575 0.89020 1.90695 1.52299 1.60968 1.41844 1.22199 0.94985 0.97683 0.97968 0.83063 1.22348 0.98294 0.92427 1.04339 1.21359 0.83840 0.85883 0.78303 1.90601 1.81466 1.26956 1.43172 1.45922 1.05128 1.24545 1.52211 1.17990 0.86107 0.93933 0.96931 1.21564 1.01280 0.96649 1.00579 1.21133 0.91232 0.99803 0.99188 1.20107 0.95865 0.96736 0.99246 1.20859 0.94226 0.99778 1.01839 1.19903 0.96004 0.94574 0.96111 1.20926 0.91657 1.02340 1.02247 1.20875 0.90056 1.02848 1.04286 1.22175 0.97440 0.83726 0.97454 0.93080 0.95580 0.93849 0.91346 0.93906 0.92753 0.75873 0.83899 0.87504 0.84794 0.84179 0.90281 0.91038 0.90031 0.89810 0.89556 0.91194 0.84611 0.86976 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.51 71.98 0.61 -4.44 16 2 C -0.12 -5.61 5.45 30.59 0.17 -5.44 16 3 C 0.28 13.10 2.24 44.25 0.10 13.20 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.54 -27.00 8.73 25.60 0.22 -26.78 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.91 -50.59 11.29 21.45 0.24 -50.34 16 9 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 13 N -0.70 -24.61 5.02 -446.08 -2.24 -26.85 16 14 C 0.51 16.63 5.63 87.66 0.49 17.13 16 15 O -0.58 -23.38 12.64 -3.04 -0.04 -23.42 16 16 C -0.11 -2.33 3.55 -10.48 -0.04 -2.37 16 17 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 18 C -0.13 -2.95 6.41 30.59 0.20 -2.75 16 19 C 0.52 14.11 7.92 87.90 0.70 14.81 16 20 O -0.54 -18.01 14.82 -3.04 -0.05 -18.06 16 21 N -0.56 -14.12 3.14 -627.69 -1.97 -16.09 16 22 C 0.14 3.73 6.60 38.15 0.25 3.98 16 23 C -0.18 -4.79 9.28 22.39 0.21 -4.58 16 24 C -0.10 -2.01 9.69 22.25 0.22 -1.80 16 25 C -0.12 -2.15 5.88 -19.84 -0.12 -2.27 16 26 C -0.11 -1.24 9.60 71.24 0.68 -0.55 16 27 C -0.07 -1.21 5.88 -19.88 -0.12 -1.33 16 28 C -0.12 -1.40 9.60 71.24 0.68 -0.72 16 29 C -0.16 -3.50 9.06 22.39 0.20 -3.30 16 30 C 0.11 2.57 5.63 86.83 0.49 3.06 16 31 H 0.05 1.93 5.65 -2.39 -0.01 1.91 16 32 H 0.02 1.16 7.85 -2.38 -0.02 1.14 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 3.59 5.95 -2.39 -0.01 3.58 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.41 11.73 8.54 -92.71 -0.79 10.94 16 38 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.11 2.63 7.89 -2.39 -0.02 2.61 16 40 H 0.13 4.06 5.26 -2.91 -0.02 4.04 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 44 H 0.08 0.71 5.94 -2.39 -0.01 0.69 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.79 5.94 -2.39 -0.01 0.78 16 47 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 48 H 0.14 2.62 7.01 -2.91 -0.02 2.60 16 49 H 0.11 2.03 7.70 -2.39 -0.02 2.01 16 50 H 0.08 2.27 6.96 -2.39 -0.02 2.26 16 Total: -1.00 -68.31 394.10 3.55 -64.76 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.17 Total: 29.98 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.40 Total: -2.89 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.97 Total: -93.29 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.08 Total: -41.48 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -68.31 3.55 -64.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362319670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.241 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds