Wall clock time and date at job start Wed Apr 1 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 H 1.09007 * 109.47105 * 54.99564 * 3 2 1 5 5 C 1.52998 * 109.47545 * 175.00032 * 3 2 1 6 6 N 1.46897 * 109.47501 * 185.56539 * 5 3 2 7 7 C 1.46898 * 110.99903 * 175.26685 * 6 5 3 8 8 C 1.53006 * 109.46935 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.49665 * 304.93426 * 8 7 6 10 10 C 1.53039 * 109.52035 * 184.85419 * 8 7 6 11 11 C 1.53046 * 109.53717 * 178.66842 * 10 8 7 12 12 C 1.53191 * 109.31123 * 61.36584 * 11 10 8 13 13 N 1.46927 * 108.77757 * 305.36571 * 12 11 10 14 14 C 1.34769 * 120.63465 * 233.58767 * 13 12 11 15 15 O 1.21282 * 120.00403 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99754 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99919 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00316 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99862 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47334 * 59.99963 * 22 20 18 24 24 H 1.48504 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47146 * 300.00307 * 22 20 18 26 26 C 1.46932 * 118.73811 * 53.60828 * 13 12 11 27 27 O 1.42898 * 109.47153 * 295.00212 * 3 2 1 28 28 C 1.42907 * 114.00105 * 142.36954 * 27 3 2 29 29 H 1.08995 * 109.47082 * 299.99686 * 1 2 3 30 30 H 1.09002 * 109.47151 * 60.00007 * 1 2 3 31 31 H 1.09001 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47206 * 240.00432 * 2 1 3 33 33 H 1.08998 * 109.47391 * 119.99551 * 2 1 3 34 34 H 1.08999 * 109.47228 * 65.56153 * 5 3 2 35 35 H 1.09003 * 109.46994 * 305.56979 * 5 3 2 36 36 H 1.00893 * 111.00218 * 299.22495 * 6 5 3 37 37 H 1.09001 * 109.47027 * 60.00205 * 7 6 5 38 38 H 1.08998 * 109.47246 * 300.00183 * 7 6 5 39 39 H 1.09003 * 109.46107 * 58.65568 * 10 8 7 40 40 H 1.08995 * 109.46445 * 298.69030 * 10 8 7 41 41 H 1.08997 * 109.49554 * 301.41889 * 11 10 8 42 42 H 1.08998 * 109.49926 * 181.31919 * 11 10 8 43 43 H 1.09000 * 109.58986 * 65.15573 * 12 11 10 44 44 H 1.09004 * 109.58536 * 185.58176 * 12 11 10 45 45 H 1.09001 * 109.47452 * 299.99769 * 16 14 13 46 46 H 1.08995 * 109.47312 * 60.00351 * 16 14 13 47 47 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.58527 * 66.17576 * 26 13 12 49 49 H 1.08994 * 109.58895 * 186.60609 * 26 13 12 50 50 H 1.09002 * 109.47064 * 174.22208 * 28 27 3 51 51 H 1.08997 * 109.46942 * 294.21935 * 28 27 3 52 52 H 1.08998 * 109.46918 * 54.22623 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 4.0434 2.8268 0.2597 7 6 5.4929 2.8616 0.4953 8 6 5.9530 4.3146 0.6298 9 1 5.6434 4.8773 -0.2508 10 6 7.4777 4.3587 0.7542 11 6 7.9411 5.8138 0.8554 12 6 7.3350 6.4524 2.1091 13 7 5.8759 6.2853 2.0668 14 6 5.0588 7.3492 2.1963 15 8 3.8560 7.1981 2.1592 16 6 5.6397 8.7267 2.3862 17 16 4.2978 9.9332 2.5267 18 6 5.2352 11.4105 2.7355 19 1 6.3144 11.3684 2.7457 20 6 4.5867 12.6282 2.8879 21 7 3.2715 12.6794 2.8770 22 14 5.5806 14.1943 3.1099 23 1 6.4537 14.3985 1.9262 24 1 4.6586 15.3499 3.2509 25 1 6.4196 14.0793 4.3298 26 6 5.3245 4.9361 1.8810 27 8 1.6619 2.0814 -1.2210 28 6 1.2892 3.4526 -1.0684 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 4.0033 0.9928 -0.7641 35 1 3.8575 0.8717 1.0057 36 1 3.7953 3.3754 -0.5499 37 1 6.0085 2.3929 -0.3430 38 1 5.7250 2.3209 1.4128 39 1 7.9273 3.8949 -0.1238 40 1 7.7850 3.8167 1.6485 41 1 7.6126 6.3625 -0.0273 42 1 9.0286 5.8457 0.9204 43 1 7.7333 5.9626 2.9977 44 1 7.5806 7.5141 2.1335 45 1 6.2419 8.7451 3.2945 46 1 6.2657 8.9782 1.5301 47 1 2.8184 13.5303 2.9839 48 1 5.5588 4.3226 2.7509 49 1 4.2436 4.9973 1.7549 50 1 1.1153 3.8932 -2.0501 51 1 0.3776 3.5173 -0.4745 52 1 2.0906 3.9929 -0.5645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480273117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:37 Heat of formation + Delta-G solvation = -99.255214 kcal Electronic energy + Delta-G solvation = -28351.832930 eV Core-core repulsion = 24476.863462 eV Total energy + Delta-G solvation = -3874.969468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.98639 -39.01613 -37.55929 -35.72723 -33.94100 -32.87448 -32.41398 -31.53284 -29.48133 -28.39871 -26.56610 -25.55810 -25.09441 -24.79575 -22.93383 -21.95245 -21.35449 -20.49487 -18.97630 -17.63848 -17.25575 -16.68421 -16.32085 -15.86166 -15.58352 -15.17220 -14.91933 -14.79120 -14.69998 -14.53276 -14.19843 -13.99968 -13.83360 -13.64496 -13.41880 -13.16305 -12.88981 -12.79478 -12.64924 -12.58846 -12.30132 -12.12038 -11.83445 -11.58984 -11.45043 -11.35036 -11.21924 -11.03712 -11.02855 -10.98913 -10.90437 -10.77614 -10.75631 -10.57286 -9.79189 -9.71167 -9.26766 -9.04603 -8.70752 -8.41383 -8.20255 -6.47932 -6.19973 -3.90290 2.99992 3.12610 3.24082 3.27304 3.30238 3.57019 3.64350 3.74915 4.21846 4.52529 4.55892 4.66798 4.67550 4.75258 4.83775 4.86287 4.99061 5.07379 5.08290 5.14884 5.19057 5.24771 5.28021 5.28845 5.36889 5.39932 5.42242 5.46036 5.51265 5.52066 5.61566 5.63024 5.65581 5.70781 5.71316 5.76803 5.80924 5.85034 5.92583 5.93583 6.00931 6.14608 6.18450 6.22285 6.69279 6.75282 7.00214 7.07608 7.60347 7.65822 8.36387 8.64392 9.25033 10.87375 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.002231 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.178066 B =12548.171220 C =14199.333660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.088 3.912 4 H 0.073 0.927 5 C 0.041 3.959 6 N -0.690 5.690 7 C 0.068 3.932 8 C -0.101 4.101 9 H 0.073 0.927 10 C -0.112 4.112 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.621 5.621 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.128 3.872 27 O -0.388 6.388 28 C 0.025 3.975 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.344 0.656 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.042 0.958 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -25.470 -6.159 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.089 4.089 6 N -0.323 5.323 7 C -0.062 4.062 8 C -0.120 4.120 9 H 0.092 0.908 10 C -0.150 4.150 11 C -0.173 4.173 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.322 3.678 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.005 3.995 27 O -0.307 6.307 28 C -0.071 4.071 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.101 0.899 51 H 0.061 0.939 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.478 -25.615 -5.699 26.471 hybrid contribution 2.554 1.140 -0.474 2.836 sum 6.031 -24.475 -6.173 25.952 Atomic orbital electron populations 1.21712 0.95186 1.01563 1.02309 1.21625 0.96816 0.95055 1.02521 1.22250 0.93110 0.93885 0.87768 0.90871 1.22474 0.95476 0.90228 1.00700 1.60564 1.13783 1.11742 1.46197 1.21953 0.87508 0.96136 1.00597 1.21548 0.95363 0.95422 0.99702 0.90814 1.21522 0.94750 0.96765 1.01979 1.21910 1.00415 0.96106 0.98847 1.21707 0.80193 1.02178 0.97609 1.48139 1.06265 1.07230 1.74106 1.20296 0.86638 0.85545 0.75306 1.90686 1.14473 1.85280 1.48615 1.23554 1.06000 0.96149 1.04392 1.85390 1.05831 0.97238 1.94967 1.22822 0.94738 0.92975 1.57817 0.91042 1.24989 0.95153 0.98783 0.94660 1.70007 1.07175 1.26589 1.46506 0.86236 0.79458 0.81037 0.78832 1.19956 1.20820 1.19952 1.21452 1.00685 0.81688 0.95641 1.87863 1.87075 1.24700 1.31053 1.22940 0.99602 0.82162 1.02419 0.92836 0.92033 0.92759 0.91306 0.90791 0.94558 0.90238 0.83582 0.95011 0.90789 0.91911 0.91685 0.91325 0.90725 0.91651 0.89327 0.89400 0.89411 0.92150 0.92321 0.88035 0.89935 0.93928 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.88 5.64 -26.73 -0.15 -1.03 16 3 C 0.09 0.77 2.44 -26.73 -0.07 0.70 16 4 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 5 C 0.04 0.34 5.37 -3.83 -0.02 0.31 16 6 N -0.69 -6.44 5.61 -113.78 -0.64 -7.07 16 7 C 0.07 0.57 5.07 -3.82 -0.02 0.55 16 8 C -0.10 -0.98 2.48 -90.50 -0.22 -1.20 16 9 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.11 -0.91 5.17 -26.69 -0.14 -1.05 16 11 C -0.13 -1.20 6.08 -26.61 -0.16 -1.37 16 12 C 0.11 1.19 6.34 -3.71 -0.02 1.16 16 13 N -0.62 -9.04 2.97 -172.76 -0.51 -9.56 16 14 C 0.53 10.39 7.72 -10.99 -0.08 10.30 16 15 O -0.52 -11.98 15.27 5.56 0.08 -11.90 16 16 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.13 1.62 5.54 -3.71 -0.02 1.60 16 27 O -0.39 -3.97 9.71 -35.23 -0.34 -4.32 16 28 C 0.03 0.24 10.40 101.05 1.05 1.29 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.34 3.42 6.46 -39.30 -0.25 3.17 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 45 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 46 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.56 6.78 -51.93 -0.35 1.21 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.06 0.58 5.95 -51.93 -0.31 0.27 16 LS Contribution 420.63 15.07 6.34 6.34 Total: -1.00 -33.70 420.63 -10.28 -43.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.57 Total: 0.90 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 0.87 Total: -5.39 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.42 Total: -42.16 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.26 Total: -16.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.70 -10.28 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480273117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.275 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds