Wall clock time and date at job start Wed Apr 1 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 H 1.09007 * 109.47105 * 54.99564 * 3 2 1 5 5 C 1.52998 * 109.47545 * 175.00032 * 3 2 1 6 6 N 1.46897 * 109.47501 * 185.56539 * 5 3 2 7 7 C 1.46898 * 110.99903 * 175.26685 * 6 5 3 8 8 C 1.53006 * 109.46935 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.49665 * 304.93426 * 8 7 6 10 10 C 1.53039 * 109.52035 * 184.85419 * 8 7 6 11 11 C 1.53046 * 109.53717 * 178.66842 * 10 8 7 12 12 C 1.53191 * 109.31123 * 61.36584 * 11 10 8 13 13 N 1.46927 * 108.77757 * 305.36571 * 12 11 10 14 14 C 1.34769 * 120.63465 * 233.58767 * 13 12 11 15 15 O 1.21282 * 120.00403 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99754 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99919 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00316 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99862 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47334 * 59.99963 * 22 20 18 24 24 H 1.48504 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47146 * 300.00307 * 22 20 18 26 26 C 1.46932 * 118.73811 * 53.60828 * 13 12 11 27 27 O 1.42898 * 109.47153 * 295.00212 * 3 2 1 28 28 C 1.42907 * 114.00105 * 142.36954 * 27 3 2 29 29 H 1.08995 * 109.47082 * 299.99686 * 1 2 3 30 30 H 1.09002 * 109.47151 * 60.00007 * 1 2 3 31 31 H 1.09001 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47206 * 240.00432 * 2 1 3 33 33 H 1.08998 * 109.47391 * 119.99551 * 2 1 3 34 34 H 1.08999 * 109.47228 * 65.56153 * 5 3 2 35 35 H 1.09003 * 109.46994 * 305.56979 * 5 3 2 36 36 H 1.00893 * 111.00218 * 299.22495 * 6 5 3 37 37 H 1.09001 * 109.47027 * 60.00205 * 7 6 5 38 38 H 1.08998 * 109.47246 * 300.00183 * 7 6 5 39 39 H 1.09003 * 109.46107 * 58.65568 * 10 8 7 40 40 H 1.08995 * 109.46445 * 298.69030 * 10 8 7 41 41 H 1.08997 * 109.49554 * 301.41889 * 11 10 8 42 42 H 1.08998 * 109.49926 * 181.31919 * 11 10 8 43 43 H 1.09000 * 109.58986 * 65.15573 * 12 11 10 44 44 H 1.09004 * 109.58536 * 185.58176 * 12 11 10 45 45 H 1.09001 * 109.47452 * 299.99769 * 16 14 13 46 46 H 1.08995 * 109.47312 * 60.00351 * 16 14 13 47 47 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.58527 * 66.17576 * 26 13 12 49 49 H 1.08994 * 109.58895 * 186.60609 * 26 13 12 50 50 H 1.09002 * 109.47064 * 174.22208 * 28 27 3 51 51 H 1.08997 * 109.46942 * 294.21935 * 28 27 3 52 52 H 1.08998 * 109.46918 * 54.22623 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 4.0434 2.8268 0.2597 7 6 5.4929 2.8616 0.4953 8 6 5.9530 4.3146 0.6298 9 1 5.6434 4.8773 -0.2508 10 6 7.4777 4.3587 0.7542 11 6 7.9411 5.8138 0.8554 12 6 7.3350 6.4524 2.1091 13 7 5.8759 6.2853 2.0668 14 6 5.0588 7.3492 2.1963 15 8 3.8560 7.1981 2.1592 16 6 5.6397 8.7267 2.3862 17 16 4.2978 9.9332 2.5267 18 6 5.2352 11.4105 2.7355 19 1 6.3144 11.3684 2.7457 20 6 4.5867 12.6282 2.8879 21 7 3.2715 12.6794 2.8770 22 14 5.5806 14.1943 3.1099 23 1 6.4537 14.3985 1.9262 24 1 4.6586 15.3499 3.2509 25 1 6.4196 14.0793 4.3298 26 6 5.3245 4.9361 1.8810 27 8 1.6619 2.0814 -1.2210 28 6 1.2892 3.4526 -1.0684 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 4.0033 0.9928 -0.7641 35 1 3.8575 0.8717 1.0057 36 1 3.7953 3.3754 -0.5499 37 1 6.0085 2.3929 -0.3430 38 1 5.7250 2.3209 1.4128 39 1 7.9273 3.8949 -0.1238 40 1 7.7850 3.8167 1.6485 41 1 7.6126 6.3625 -0.0273 42 1 9.0286 5.8457 0.9204 43 1 7.7333 5.9626 2.9977 44 1 7.5806 7.5141 2.1335 45 1 6.2419 8.7451 3.2945 46 1 6.2657 8.9782 1.5301 47 1 2.8184 13.5303 2.9839 48 1 5.5588 4.3226 2.7509 49 1 4.2436 4.9973 1.7549 50 1 1.1153 3.8932 -2.0501 51 1 0.3776 3.5173 -0.4745 52 1 2.0906 3.9929 -0.5645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480273117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:35 Heat of formation + Delta-G solvation = -121.331611 kcal Electronic energy + Delta-G solvation = -28352.790234 eV Core-core repulsion = 24476.863462 eV Total energy + Delta-G solvation = -3875.926773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.19164 -39.79518 -38.70482 -36.60522 -34.67418 -34.58623 -33.84446 -32.41956 -30.88707 -29.21931 -27.71155 -27.35287 -26.09455 -25.72212 -23.62641 -22.72119 -22.08719 -21.42124 -20.33934 -19.43922 -18.13756 -17.97969 -17.20107 -16.92959 -16.87236 -16.56211 -16.29334 -16.02761 -15.67872 -15.45190 -15.29672 -14.87899 -14.81723 -14.60734 -14.49688 -14.28096 -14.11802 -13.90384 -13.61103 -13.41627 -13.34923 -13.16571 -13.00969 -12.93212 -12.86632 -12.60814 -12.29386 -12.12510 -12.04757 -11.95283 -11.82252 -11.72493 -11.61517 -11.56487 -11.38303 -11.12991 -10.81932 -10.45375 -10.26490 -9.63503 -9.37245 -8.67645 -8.34374 -6.13037 1.25811 1.43820 1.45923 1.55692 1.59968 2.14625 2.27734 2.85441 2.99383 3.06958 3.26191 3.68070 3.76624 3.85977 3.95418 4.03109 4.08953 4.12382 4.18709 4.24148 4.27349 4.39582 4.42565 4.45744 4.49667 4.54412 4.57238 4.62235 4.65332 4.72947 4.73727 4.75115 4.87459 4.90832 4.94356 4.97336 5.01348 5.09325 5.12305 5.14588 5.19648 5.26005 5.41067 5.41362 5.45879 5.62536 6.05108 6.19427 6.24665 6.32631 6.34432 7.06317 7.18074 8.74652 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.002231 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.178066 B =12548.171220 C =14199.333660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.085 3.915 4 H 0.060 0.940 5 C 0.046 3.954 6 N -0.705 5.705 7 C 0.074 3.926 8 C -0.091 4.091 9 H 0.054 0.946 10 C -0.107 4.107 11 C -0.130 4.130 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.530 3.470 15 O -0.567 6.567 16 C -0.122 4.122 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.127 3.873 27 O -0.399 6.399 28 C 0.028 3.972 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.338 0.662 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.271 0.729 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.040 0.960 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -26.828 -6.043 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.027 3.973 4 H 0.078 0.922 5 C -0.083 4.083 6 N -0.337 5.337 7 C -0.056 4.056 8 C -0.111 4.111 9 H 0.072 0.928 10 C -0.145 4.145 11 C -0.168 4.168 12 C -0.026 4.026 13 N -0.342 5.342 14 C 0.317 3.683 15 O -0.445 6.445 16 C -0.273 4.273 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C 0.005 3.995 27 O -0.318 6.318 28 C -0.068 4.068 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.058 0.942 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.949 -27.024 -5.586 28.457 hybrid contribution 1.525 1.426 -0.512 2.150 sum 8.474 -25.598 -6.098 27.645 Atomic orbital electron populations 1.21705 0.95397 1.02145 1.01476 1.21634 0.96617 0.94001 1.03394 1.22374 0.93691 0.94523 0.86734 0.92172 1.22459 0.94843 0.89726 1.01305 1.60600 1.14687 1.12358 1.46038 1.21934 0.86932 0.95107 1.01602 1.21463 0.96790 0.95807 0.97020 0.92755 1.21524 0.92842 0.96454 1.03665 1.21902 1.01897 0.96199 0.96773 1.22073 0.77687 1.02746 1.00081 1.48174 1.07587 1.06663 1.71769 1.20132 0.86353 0.86186 0.75585 1.90669 1.16547 1.85907 1.51401 1.23361 1.03205 0.94869 1.05893 1.85590 1.11194 1.00396 1.95332 1.23158 0.95177 0.93225 1.57830 0.89924 1.26151 0.96332 1.02836 0.93903 1.70181 1.09320 1.27649 1.47613 0.84999 0.77769 0.75717 0.79476 1.18587 1.20396 1.18587 1.21562 0.99149 0.80817 0.97932 1.87842 1.87214 1.24731 1.32029 1.22906 0.99074 0.82150 1.02718 0.93124 0.93423 0.91450 0.91165 0.89059 0.94417 0.88903 0.84335 0.93692 0.89662 0.90107 0.89998 0.92783 0.87892 0.89168 0.89731 0.87633 0.87739 0.91990 0.90676 0.91308 0.89160 0.94162 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 71.98 0.71 -1.40 16 2 C -0.12 -1.59 5.64 30.59 0.17 -1.41 16 3 C 0.08 1.46 2.44 30.59 0.07 1.54 16 4 H 0.06 1.19 7.73 -2.38 -0.02 1.17 16 5 C 0.05 0.70 5.37 86.30 0.46 1.17 16 6 N -0.70 -12.81 5.61 -513.89 -2.88 -15.69 16 7 C 0.07 1.07 5.07 86.31 0.44 1.51 16 8 C -0.09 -1.62 2.48 -10.71 -0.03 -1.65 16 9 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 10 C -0.11 -1.34 5.17 30.62 0.16 -1.18 16 11 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 12 C 0.10 1.87 6.34 86.36 0.55 2.42 16 13 N -0.61 -17.17 2.97 -818.90 -2.43 -19.61 16 14 C 0.53 20.98 7.72 87.66 0.68 21.65 16 15 O -0.57 -27.67 15.27 -3.04 -0.05 -27.71 16 16 C -0.12 -5.06 4.50 71.24 0.32 -4.74 16 17 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.53 9.50 67.96 0.65 -30.89 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 22 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.13 3.14 5.54 86.36 0.48 3.62 16 27 O -0.40 -8.34 9.71 -148.98 -1.45 -9.79 16 28 C 0.03 0.57 10.40 113.37 1.18 1.75 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.34 6.87 6.46 -89.70 -0.58 6.29 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 45 H 0.11 3.97 7.94 -2.39 -0.02 3.95 16 46 H 0.10 3.95 7.69 -2.40 -0.02 3.93 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 2.20 6.78 -2.39 -0.02 2.18 16 50 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.05 1.04 5.95 -2.39 -0.01 1.03 16 Total: -1.00 -76.85 420.63 1.13 -75.73 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.30 Total: 25.48 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.49 Total: -8.12 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -5.03 Total: -91.55 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.49 Total: -37.50 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -76.85 1.13 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480273117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.605 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds