Wall clock time and date at job start Wed Apr 1 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 H 1.08999 * 109.47262 * 304.32603 * 3 2 1 5 5 C 1.52992 * 109.47224 * 184.32335 * 3 2 1 6 6 N 1.46901 * 109.47175 * 179.97438 * 5 3 2 7 7 C 1.46906 * 110.99947 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46841 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.50013 * 305.06728 * 8 7 6 10 10 C 1.53037 * 109.49887 * 184.99863 * 8 7 6 11 11 C 1.53041 * 109.54242 * 178.64951 * 10 8 7 12 12 C 1.53198 * 109.30946 * 61.36895 * 11 10 8 13 13 N 1.46928 * 108.77456 * 305.36772 * 12 11 10 14 14 C 1.34780 * 120.62920 * 233.61011 * 13 12 11 15 15 O 1.21278 * 119.99947 * 179.97438 * 14 13 12 16 16 C 1.50707 * 119.99767 * 359.97438 * 14 13 12 17 17 S 1.80999 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99596 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00336 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99765 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47063 * 90.00188 * 22 20 18 24 24 H 1.48504 * 109.47182 * 210.00116 * 22 20 18 25 25 H 1.48502 * 109.47513 * 330.00097 * 22 20 18 26 26 C 1.46927 * 118.74245 * 53.60318 * 13 12 11 27 27 O 1.42896 * 109.46876 * 64.32423 * 3 2 1 28 28 C 1.42904 * 114.00124 * 216.85226 * 27 3 2 29 29 H 1.09005 * 109.47221 * 294.12553 * 1 2 3 30 30 H 1.09001 * 109.47222 * 54.12043 * 1 2 3 31 31 H 1.09003 * 109.47664 * 174.12698 * 1 2 3 32 32 H 1.08999 * 109.47006 * 240.00017 * 2 1 3 33 33 H 1.08996 * 109.47189 * 120.00640 * 2 1 3 34 34 H 1.09004 * 109.47479 * 60.00017 * 5 3 2 35 35 H 1.08999 * 109.47220 * 300.00293 * 5 3 2 36 36 H 1.00895 * 111.00040 * 303.95402 * 6 5 3 37 37 H 1.08992 * 109.46705 * 60.00261 * 7 6 5 38 38 H 1.08997 * 109.46981 * 299.99732 * 7 6 5 39 39 H 1.09009 * 109.45678 * 58.63291 * 10 8 7 40 40 H 1.09001 * 109.45087 * 298.66960 * 10 8 7 41 41 H 1.09001 * 109.49759 * 301.41760 * 11 10 8 42 42 H 1.09001 * 109.52271 * 181.33396 * 11 10 8 43 43 H 1.08998 * 109.58321 * 65.14996 * 12 11 10 44 44 H 1.08996 * 109.58459 * 185.57698 * 12 11 10 45 45 H 1.09000 * 109.46584 * 300.00195 * 16 14 13 46 46 H 1.09003 * 109.47057 * 60.00139 * 16 14 13 47 47 H 0.97005 * 119.99875 * 179.97438 * 21 20 18 48 48 H 1.08990 * 109.59100 * 186.60404 * 26 13 12 49 49 H 1.09004 * 109.57919 * 66.17907 * 26 13 12 50 50 H 1.09003 * 109.46976 * 60.40722 * 28 27 3 51 51 H 1.08995 * 109.47383 * 180.41026 * 28 27 3 52 52 H 1.08999 * 109.47165 * 300.41674 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6148 1.9782 -0.8487 5 6 3.5661 1.4438 -0.1087 6 7 4.0558 2.8288 -0.1094 7 6 5.5207 2.8692 -0.2121 8 6 5.9921 4.3247 -0.2091 9 1 5.4848 4.8731 -1.0027 10 6 7.5041 4.3724 -0.4411 11 6 7.9715 5.8294 -0.4718 12 6 7.6686 6.4871 0.8782 13 7 6.2400 6.3178 1.1768 14 6 5.4699 7.3830 1.4750 15 8 4.2918 7.2302 1.7192 16 6 6.0728 8.7639 1.5052 17 16 4.7939 9.9712 1.9329 18 6 5.7477 11.4524 1.8978 19 1 6.8001 11.4115 1.6589 20 6 5.1461 12.6719 2.1761 21 7 3.8632 12.7218 2.4667 22 14 6.1570 14.2422 2.1382 23 1 6.1235 14.8196 0.7704 24 1 5.5899 15.2194 3.1020 25 1 7.5612 13.9362 2.5121 26 6 5.6667 4.9654 1.1438 27 8 1.6485 2.0861 1.2142 28 6 1.2945 3.4614 1.0551 29 1 -0.3634 0.4201 0.9379 30 1 -0.3634 0.6023 -0.8327 31 1 -0.3634 -1.0223 -0.1052 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8649 0.9528 -1.0349 35 1 3.9913 0.9080 0.7399 36 1 3.6262 3.3638 -0.8490 37 1 5.8332 2.3876 -1.1386 38 1 5.9590 2.3439 0.6364 39 1 7.7407 3.8950 -1.3921 40 1 8.0120 3.8450 0.3663 41 1 7.4455 6.3636 -1.2630 42 1 9.0445 5.8637 -0.6606 43 1 8.2636 6.0117 1.6580 44 1 7.9083 7.5493 0.8291 45 1 6.8679 8.7969 2.2500 46 1 6.4836 9.0024 0.5242 47 1 3.4429 13.5741 2.6616 48 1 4.5857 5.0235 1.2701 49 1 6.0986 4.3660 1.9453 50 1 0.4517 3.5426 0.3686 51 1 1.0166 3.8793 2.0226 52 1 2.1451 4.0113 0.6525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480273120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:45 Heat of formation + Delta-G solvation = -97.903699 kcal Electronic energy + Delta-G solvation = -28453.570889 eV Core-core repulsion = 24578.660027 eV Total energy + Delta-G solvation = -3874.910862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.96870 -38.87546 -37.54149 -35.73454 -33.87748 -32.86257 -32.40961 -31.52537 -29.46456 -28.32816 -26.41234 -25.55195 -25.07442 -24.77124 -22.94604 -21.97069 -21.35518 -20.46454 -18.96347 -17.62700 -17.13995 -16.66274 -16.08962 -15.86365 -15.55359 -15.14552 -15.00361 -14.78870 -14.70775 -14.50288 -14.12197 -13.98654 -13.76041 -13.61098 -13.38411 -13.15358 -12.96586 -12.78214 -12.59805 -12.50634 -12.29130 -11.96247 -11.82086 -11.62253 -11.44921 -11.28401 -11.21507 -11.05364 -11.01775 -10.98905 -10.85367 -10.77635 -10.74404 -10.54490 -9.77832 -9.59650 -9.25015 -9.04926 -8.62650 -8.39516 -8.19141 -6.47223 -6.19739 -3.89813 3.01254 3.14113 3.23175 3.27876 3.31751 3.65399 3.70223 3.74442 4.22130 4.50988 4.56169 4.64576 4.68054 4.78511 4.80700 4.86673 4.98315 5.06652 5.09038 5.15245 5.18065 5.22010 5.29802 5.38075 5.39442 5.40348 5.45372 5.49411 5.52831 5.62196 5.63646 5.64800 5.70314 5.71910 5.77400 5.81868 5.85434 5.93200 5.94535 5.96890 6.02581 6.15457 6.20092 6.25399 6.69765 6.76839 7.03988 7.21542 7.61090 7.67456 8.36977 8.65995 9.25449 10.87649 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.002272 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.548210 B =12319.981367 C =14095.520152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.091 3.909 4 H 0.057 0.943 5 C 0.040 3.960 6 N -0.683 5.683 7 C 0.069 3.931 8 C -0.100 4.100 9 H 0.073 0.927 10 C -0.112 4.112 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.621 5.621 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.128 3.872 27 O -0.373 6.373 28 C 0.033 3.967 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.339 0.661 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.268 0.732 48 H 0.102 0.898 49 H 0.058 0.942 50 H 0.030 0.970 51 H 0.083 0.917 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -25.581 -8.763 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.089 4.089 6 N -0.314 5.314 7 C -0.061 4.061 8 C -0.120 4.120 9 H 0.091 0.909 10 C -0.150 4.150 11 C -0.173 4.173 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.322 3.678 15 O -0.390 6.390 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C 0.006 3.994 27 O -0.292 6.292 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.120 0.880 49 H 0.077 0.923 50 H 0.049 0.951 51 H 0.101 0.899 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.046 -25.724 -7.467 26.864 hybrid contribution 2.322 1.138 -1.577 3.029 sum 4.368 -24.586 -9.044 26.558 Atomic orbital electron populations 1.21701 0.95182 1.01375 1.02401 1.21620 0.96800 0.95097 1.02544 1.22141 0.92676 0.93785 0.88150 0.92483 1.22527 0.95795 0.90006 1.00622 1.60425 1.05964 1.12186 1.52859 1.21949 0.87830 0.96058 1.00216 1.21542 0.95966 0.95337 0.99133 0.90852 1.21524 0.95018 0.96734 1.01751 1.21908 1.01361 0.96026 0.97960 1.21704 0.81668 1.02086 0.96240 1.48143 1.09504 1.06982 1.71120 1.20291 0.86333 0.85585 0.75584 1.90684 1.15668 1.85397 1.47237 1.23556 1.05685 0.96134 1.04721 1.85393 1.10473 0.96874 1.90693 1.22863 0.97653 0.92702 1.55058 0.91000 1.24991 0.95226 0.98814 0.94591 1.70022 1.09874 1.26406 1.43961 0.86178 0.79805 0.81485 0.78083 1.20306 1.20760 1.19710 1.21450 1.01392 0.81466 0.95114 1.87874 1.86853 1.24138 1.30306 1.22857 0.99033 0.82194 1.02308 0.91882 0.93074 0.92794 0.91106 0.90977 0.94793 0.90197 0.84333 0.95149 0.90747 0.91966 0.91686 0.91359 0.90754 0.91658 0.89346 0.89408 0.89445 0.92215 0.87957 0.92324 0.95120 0.89890 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.74 37.16 0.36 -0.70 16 2 C -0.12 -0.87 5.64 -26.73 -0.15 -1.02 16 3 C 0.09 0.78 2.43 -26.74 -0.07 0.72 16 4 H 0.06 0.47 7.72 -51.93 -0.40 0.06 16 5 C 0.04 0.32 5.38 -3.83 -0.02 0.30 16 6 N -0.68 -6.16 4.55 -113.78 -0.52 -6.68 16 7 C 0.07 0.57 5.08 -3.82 -0.02 0.55 16 8 C -0.10 -0.96 2.48 -90.50 -0.22 -1.19 16 9 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 10 C -0.11 -0.90 5.17 -26.69 -0.14 -1.04 16 11 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 12 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 13 N -0.62 -9.10 2.97 -172.76 -0.51 -9.61 16 14 C 0.53 10.42 7.72 -10.98 -0.08 10.33 16 15 O -0.52 -11.97 15.27 5.56 0.08 -11.88 16 16 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.13 1.65 5.54 -3.71 -0.02 1.63 16 27 O -0.37 -4.27 9.88 -35.23 -0.35 -4.62 16 28 C 0.03 0.36 10.64 101.05 1.07 1.44 16 29 H 0.06 0.53 7.96 -51.93 -0.41 0.11 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.34 2.98 8.41 -39.29 -0.33 2.65 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.02 5.93 -51.93 -0.31 0.72 16 45 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 46 H 0.09 1.68 7.69 -51.91 -0.40 1.28 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.10 1.59 6.79 -51.93 -0.35 1.24 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.03 0.30 8.11 -51.93 -0.42 -0.12 16 51 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.06 0.73 6.47 -51.93 -0.34 0.39 16 LS Contribution 422.48 15.07 6.37 6.37 Total: -1.00 -33.92 422.48 -10.22 -44.14 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.68 Total: 0.41 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.89 Total: -5.15 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.30 Total: -41.84 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.26 Total: -16.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.92 -10.22 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480273120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.759 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds