Wall clock time and date at job start Wed Apr 1 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 H 1.08999 * 109.47262 * 304.32603 * 3 2 1 5 5 C 1.52992 * 109.47224 * 184.32335 * 3 2 1 6 6 N 1.46901 * 109.47175 * 179.97438 * 5 3 2 7 7 C 1.46906 * 110.99947 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46841 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.50013 * 305.06728 * 8 7 6 10 10 C 1.53037 * 109.49887 * 184.99863 * 8 7 6 11 11 C 1.53041 * 109.54242 * 178.64951 * 10 8 7 12 12 C 1.53198 * 109.30946 * 61.36895 * 11 10 8 13 13 N 1.46928 * 108.77456 * 305.36772 * 12 11 10 14 14 C 1.34780 * 120.62920 * 233.61011 * 13 12 11 15 15 O 1.21278 * 119.99947 * 179.97438 * 14 13 12 16 16 C 1.50707 * 119.99767 * 359.97438 * 14 13 12 17 17 S 1.80999 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99596 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00336 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99765 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47063 * 90.00188 * 22 20 18 24 24 H 1.48504 * 109.47182 * 210.00116 * 22 20 18 25 25 H 1.48502 * 109.47513 * 330.00097 * 22 20 18 26 26 C 1.46927 * 118.74245 * 53.60318 * 13 12 11 27 27 O 1.42896 * 109.46876 * 64.32423 * 3 2 1 28 28 C 1.42904 * 114.00124 * 216.85226 * 27 3 2 29 29 H 1.09005 * 109.47221 * 294.12553 * 1 2 3 30 30 H 1.09001 * 109.47222 * 54.12043 * 1 2 3 31 31 H 1.09003 * 109.47664 * 174.12698 * 1 2 3 32 32 H 1.08999 * 109.47006 * 240.00017 * 2 1 3 33 33 H 1.08996 * 109.47189 * 120.00640 * 2 1 3 34 34 H 1.09004 * 109.47479 * 60.00017 * 5 3 2 35 35 H 1.08999 * 109.47220 * 300.00293 * 5 3 2 36 36 H 1.00895 * 111.00040 * 303.95402 * 6 5 3 37 37 H 1.08992 * 109.46705 * 60.00261 * 7 6 5 38 38 H 1.08997 * 109.46981 * 299.99732 * 7 6 5 39 39 H 1.09009 * 109.45678 * 58.63291 * 10 8 7 40 40 H 1.09001 * 109.45087 * 298.66960 * 10 8 7 41 41 H 1.09001 * 109.49759 * 301.41760 * 11 10 8 42 42 H 1.09001 * 109.52271 * 181.33396 * 11 10 8 43 43 H 1.08998 * 109.58321 * 65.14996 * 12 11 10 44 44 H 1.08996 * 109.58459 * 185.57698 * 12 11 10 45 45 H 1.09000 * 109.46584 * 300.00195 * 16 14 13 46 46 H 1.09003 * 109.47057 * 60.00139 * 16 14 13 47 47 H 0.97005 * 119.99875 * 179.97438 * 21 20 18 48 48 H 1.08990 * 109.59100 * 186.60404 * 26 13 12 49 49 H 1.09004 * 109.57919 * 66.17907 * 26 13 12 50 50 H 1.09003 * 109.46976 * 60.40722 * 28 27 3 51 51 H 1.08995 * 109.47383 * 180.41026 * 28 27 3 52 52 H 1.08999 * 109.47165 * 300.41674 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6148 1.9782 -0.8487 5 6 3.5661 1.4438 -0.1087 6 7 4.0558 2.8288 -0.1094 7 6 5.5207 2.8692 -0.2121 8 6 5.9921 4.3247 -0.2091 9 1 5.4848 4.8731 -1.0027 10 6 7.5041 4.3724 -0.4411 11 6 7.9715 5.8294 -0.4718 12 6 7.6686 6.4871 0.8782 13 7 6.2400 6.3178 1.1768 14 6 5.4699 7.3830 1.4750 15 8 4.2918 7.2302 1.7192 16 6 6.0728 8.7639 1.5052 17 16 4.7939 9.9712 1.9329 18 6 5.7477 11.4524 1.8978 19 1 6.8001 11.4115 1.6589 20 6 5.1461 12.6719 2.1761 21 7 3.8632 12.7218 2.4667 22 14 6.1570 14.2422 2.1382 23 1 6.1235 14.8196 0.7704 24 1 5.5899 15.2194 3.1020 25 1 7.5612 13.9362 2.5121 26 6 5.6667 4.9654 1.1438 27 8 1.6485 2.0861 1.2142 28 6 1.2945 3.4614 1.0551 29 1 -0.3634 0.4201 0.9379 30 1 -0.3634 0.6023 -0.8327 31 1 -0.3634 -1.0223 -0.1052 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8649 0.9528 -1.0349 35 1 3.9913 0.9080 0.7399 36 1 3.6262 3.3638 -0.8490 37 1 5.8332 2.3876 -1.1386 38 1 5.9590 2.3439 0.6364 39 1 7.7407 3.8950 -1.3921 40 1 8.0120 3.8450 0.3663 41 1 7.4455 6.3636 -1.2630 42 1 9.0445 5.8637 -0.6606 43 1 8.2636 6.0117 1.6580 44 1 7.9083 7.5493 0.8291 45 1 6.8679 8.7969 2.2500 46 1 6.4836 9.0024 0.5242 47 1 3.4429 13.5741 2.6616 48 1 4.5857 5.0235 1.2701 49 1 6.0986 4.3660 1.9453 50 1 0.4517 3.5426 0.3686 51 1 1.0166 3.8793 2.0226 52 1 2.1451 4.0113 0.6525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480273120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:43 Heat of formation + Delta-G solvation = -119.942788 kcal Electronic energy + Delta-G solvation = -28454.526576 eV Core-core repulsion = 24578.660027 eV Total energy + Delta-G solvation = -3875.866549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18211 -39.67849 -38.68747 -36.61734 -34.64002 -34.58458 -33.81978 -32.41312 -30.88034 -29.14788 -27.71012 -27.28223 -26.08998 -25.69717 -23.62566 -22.73403 -22.08654 -21.38731 -20.33230 -19.43701 -18.12212 -17.89102 -17.11202 -16.88287 -16.77135 -16.52691 -16.31811 -16.02922 -15.67105 -15.55179 -15.28281 -14.81196 -14.77801 -14.59427 -14.49507 -14.23972 -14.07987 -13.91395 -13.68225 -13.39926 -13.27219 -13.15559 -13.02610 -12.89201 -12.76956 -12.56917 -12.31802 -12.18642 -12.00693 -11.92310 -11.81965 -11.71112 -11.59083 -11.54239 -11.36243 -11.14402 -10.81087 -10.38750 -10.25886 -9.62343 -9.25542 -8.67363 -8.34546 -6.12986 1.26048 1.42339 1.46164 1.56798 1.60762 2.15036 2.27582 2.94906 2.99324 3.09623 3.26383 3.68611 3.77892 3.86860 3.93415 4.03416 4.09349 4.13992 4.22153 4.24207 4.27421 4.40600 4.42633 4.45365 4.50457 4.57767 4.60236 4.63145 4.70384 4.73689 4.74573 4.76223 4.91423 4.93996 4.97716 5.00351 5.08005 5.08968 5.13326 5.15545 5.21944 5.26943 5.41365 5.42259 5.46635 5.63163 6.07634 6.19643 6.33215 6.35193 6.45723 7.06317 7.18852 8.74721 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.002272 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.548210 B =12319.981367 C =14095.520152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.085 3.915 4 H 0.060 0.940 5 C 0.046 3.954 6 N -0.701 5.701 7 C 0.076 3.924 8 C -0.090 4.090 9 H 0.058 0.942 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.530 3.470 15 O -0.565 6.565 16 C -0.122 4.122 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.128 3.872 27 O -0.392 6.392 28 C 0.038 3.962 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.338 0.662 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.271 0.729 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.041 0.959 51 H 0.071 0.929 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -26.906 -10.300 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C 0.027 3.973 4 H 0.079 0.921 5 C -0.083 4.083 6 N -0.333 5.333 7 C -0.053 4.053 8 C -0.109 4.109 9 H 0.077 0.923 10 C -0.145 4.145 11 C -0.167 4.167 12 C -0.026 4.026 13 N -0.342 5.342 14 C 0.317 3.683 15 O -0.444 6.444 16 C -0.273 4.273 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.181 1.181 26 C 0.006 3.994 27 O -0.311 6.311 28 C -0.059 4.059 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.285 -27.099 -9.025 29.047 hybrid contribution 1.364 1.404 -1.113 2.252 sum 6.649 -25.694 -10.138 28.411 Atomic orbital electron populations 1.21695 0.95362 1.02075 1.01486 1.21631 0.96623 0.94093 1.03343 1.22361 0.93339 0.94430 0.87149 0.92143 1.22466 0.95112 0.89508 1.01238 1.60413 1.06685 1.12907 1.53260 1.21896 0.87267 0.94921 1.01220 1.21454 0.97530 0.95764 0.96191 0.92327 1.21526 0.93189 0.96392 1.03401 1.21898 1.02981 0.96121 0.95705 1.22069 0.79288 1.02665 0.98610 1.48176 1.10742 1.06396 1.68889 1.20132 0.86015 0.86219 0.75904 1.90669 1.17737 1.86009 1.49981 1.23363 1.03270 0.94848 1.05848 1.85593 1.15430 1.00012 1.91429 1.23190 0.98019 0.92957 1.55140 0.89942 1.26152 0.96463 1.02888 0.93750 1.70191 1.12023 1.27521 1.45032 0.84941 0.78347 0.76136 0.78473 1.19235 1.20303 1.18127 1.21545 0.99514 0.80601 0.97746 1.87843 1.87123 1.23933 1.32218 1.22744 0.98961 0.82366 1.01813 0.93691 0.92886 0.91494 0.88910 0.91460 0.92754 0.90905 0.84420 0.93214 0.90510 0.89890 0.90342 0.92605 0.87950 0.89409 0.89717 0.87744 0.87687 0.91998 0.91252 0.91267 0.94014 0.91070 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.74 71.98 0.70 -1.32 16 2 C -0.12 -1.55 5.64 30.59 0.17 -1.37 16 3 C 0.09 1.41 2.43 30.59 0.07 1.49 16 4 H 0.06 0.95 7.72 -2.39 -0.02 0.93 16 5 C 0.05 0.68 5.38 86.30 0.46 1.14 16 6 N -0.70 -12.19 4.55 -513.89 -2.34 -14.52 16 7 C 0.08 1.09 5.08 86.30 0.44 1.53 16 8 C -0.09 -1.57 2.48 -10.72 -0.03 -1.59 16 9 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 10 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 11 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 12 C 0.10 1.90 6.34 86.36 0.55 2.45 16 13 N -0.61 -17.41 2.97 -818.89 -2.43 -19.84 16 14 C 0.53 21.10 7.72 87.66 0.68 21.78 16 15 O -0.57 -27.70 15.27 -3.02 -0.05 -27.75 16 16 C -0.12 -5.09 4.50 71.24 0.32 -4.77 16 17 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 18 C -0.55 -31.55 9.50 67.96 0.65 -30.91 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 22 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C 0.13 3.23 5.54 86.36 0.48 3.71 16 27 O -0.39 -9.25 9.88 -148.98 -1.47 -10.72 16 28 C 0.04 0.90 10.64 113.37 1.21 2.11 16 29 H 0.04 0.76 7.96 -2.38 -0.02 0.75 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.34 5.90 8.41 -89.70 -0.75 5.14 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.76 5.93 -2.39 -0.01 1.75 16 45 H 0.10 3.97 7.94 -2.39 -0.02 3.95 16 46 H 0.10 3.97 7.69 -2.39 -0.02 3.95 16 47 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 48 H 0.07 2.26 6.79 -2.39 -0.02 2.25 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.04 0.87 8.11 -2.39 -0.02 0.85 16 51 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.05 1.29 6.47 -2.39 -0.02 1.27 16 Total: -1.00 -77.61 422.48 1.49 -76.11 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.12 Total: 24.39 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.51 Total: -7.45 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -4.48 Total: -90.70 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.52 Total: -38.47 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -77.61 1.49 -76.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480273120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.829 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds