Wall clock time and date at job start Wed Apr 1 2020 04:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46892 * 2 1 4 4 N 1.46497 * 109.46660 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99669 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.38811 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31624 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47482 * 89.99767 * 9 7 5 11 11 H 1.48502 * 109.46743 * 210.00323 * 9 7 5 12 12 H 1.48503 * 109.46756 * 329.99586 * 9 7 5 13 13 N 1.46502 * 109.47066 * 119.99976 * 2 1 3 14 14 C 1.34782 * 119.99890 * 298.23901 * 13 2 1 15 15 O 1.21280 * 120.00201 * 5.12572 * 14 13 2 16 16 C 1.50700 * 120.00017 * 185.13005 * 14 13 2 17 17 H 1.09002 * 109.69103 * 300.55324 * 16 14 13 18 18 C 1.53404 * 109.69810 * 61.14773 * 16 14 13 19 19 O 1.42825 * 108.37327 * 184.41297 * 18 16 14 20 20 C 1.35846 * 117.85848 * 310.80027 * 19 18 16 21 21 C 1.39152 * 118.49738 * 196.97161 * 20 19 18 22 22 C 1.37968 * 120.21623 * 180.40348 * 21 20 19 23 23 C 1.38283 * 119.95575 * 0.02562 * 22 21 20 24 24 C 1.38110 * 119.98839 * 359.93139 * 23 22 21 25 25 C 1.38368 * 121.80558 * 17.26345 * 20 19 18 26 26 C 1.50771 * 121.40347 * 359.47281 * 25 20 19 27 27 C 1.52996 * 109.47125 * 239.99639 * 2 1 3 28 28 C 1.53000 * 117.49913 * 12.03828 * 27 2 1 29 29 C 1.52993 * 117.50267 * 303.41464 * 27 2 1 30 30 H 1.08995 * 109.46882 * 60.00101 * 1 2 3 31 31 H 1.08998 * 109.47071 * 299.99598 * 1 2 3 32 32 H 1.09005 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46866 * 300.00009 * 3 2 1 34 34 H 1.08998 * 109.46935 * 60.00319 * 3 2 1 35 35 H 0.96999 * 120.00550 * 359.97438 * 4 3 2 36 36 H 0.96998 * 119.99857 * 180.02562 * 8 7 5 37 37 H 0.96999 * 119.99887 * 118.23715 * 13 2 1 38 38 H 1.09002 * 109.68843 * 304.13703 * 18 16 14 39 39 H 1.08997 * 109.67973 * 64.69856 * 18 16 14 40 40 H 1.08000 * 119.88799 * 0.40338 * 21 20 19 41 41 H 1.07995 * 120.01744 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00905 * 179.91673 * 23 22 21 43 43 H 1.07993 * 119.84522 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.43551 * 257.76628 * 26 25 20 45 45 H 1.09005 * 109.39647 * 137.87580 * 26 25 20 46 46 H 1.09005 * 115.54903 * 157.73903 * 27 2 1 47 47 H 1.08999 * 117.49888 * 359.97438 * 28 27 2 48 48 H 1.09000 * 117.49985 * 145.01390 * 28 27 2 49 49 H 1.09001 * 117.49936 * 214.98115 * 29 27 2 50 50 H 1.09000 * 117.49935 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1896 2.6284 -0.0013 6 1 3.6496 3.5637 -0.0017 7 6 5.5778 2.6285 -0.0013 8 7 6.2359 1.4886 -0.0002 9 14 6.5118 4.2462 -0.0015 10 1 6.7593 4.6751 1.3985 11 1 7.8093 4.0685 -0.7016 12 1 5.7092 5.2811 -0.7017 13 7 2.0184 -0.6906 1.1962 14 6 1.7223 -0.2098 2.4200 15 8 0.9758 0.7392 2.5344 16 6 2.3189 -0.8513 3.6462 17 1 2.0251 -1.9000 3.6919 18 6 3.8482 -0.7437 3.5940 19 8 4.3876 -1.4484 4.7130 20 6 3.8648 -1.1876 5.9394 21 6 4.5875 -1.5723 7.0647 22 6 4.0861 -1.3323 8.3274 23 6 2.8612 -0.7081 8.4768 24 6 2.1416 -0.3242 7.3623 25 6 2.6409 -0.5606 6.0921 26 6 1.8282 -0.1230 4.9000 27 6 2.0400 -0.7213 -1.2492 28 6 1.0241 -1.0305 -2.3506 29 6 1.5710 -2.1599 -1.4753 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6025 -0.0006 36 1 7.2059 1.4887 0.0001 37 1 2.5547 -1.4939 1.1074 38 1 4.2162 -1.1871 2.6687 39 1 4.1443 0.3042 3.6426 40 1 5.5440 -2.0602 6.9491 41 1 4.6498 -1.6318 9.1985 42 1 2.4672 -0.5211 9.4648 43 1 1.1854 0.1635 7.4817 44 1 1.9381 0.9525 4.7611 45 1 0.7783 -0.3614 5.0704 46 1 3.0549 -0.4686 -1.5566 47 1 -0.0076 -0.7204 -2.1852 48 1 1.3704 -0.9811 -3.3830 49 1 2.2770 -2.8536 -1.9317 50 1 0.8993 -2.5927 -0.7339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481935033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:45 Heat of formation + Delta-G solvation = -10.608091 kcal Electronic energy + Delta-G solvation = -31325.849011 eV Core-core repulsion = 27319.279619 eV Total energy + Delta-G solvation = -4006.569392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94630 -39.90581 -37.97392 -37.33295 -34.75842 -34.07483 -33.51532 -31.53919 -30.54146 -30.23300 -29.43814 -25.94183 -25.65055 -24.59669 -23.43057 -22.56841 -22.37765 -22.08133 -20.85501 -19.42258 -18.84057 -17.81062 -17.46853 -17.17304 -16.25297 -16.08651 -15.44262 -15.20447 -15.11717 -14.69809 -14.51211 -14.21279 -14.09631 -13.66671 -13.61526 -13.28148 -13.20833 -13.03660 -12.96874 -12.63673 -12.33664 -12.12095 -11.95314 -11.79850 -11.50605 -11.39979 -11.12581 -11.08530 -10.87956 -10.81109 -10.78693 -10.71863 -10.50195 -10.20057 -10.09790 -9.84733 -9.68194 -9.32031 -8.83025 -8.79105 -8.63209 -8.14638 -6.86403 -5.75691 -3.01911 1.28111 1.40549 2.85360 3.26099 3.38189 3.44819 3.50732 3.51517 3.75164 4.06647 4.54901 4.61282 4.63485 4.72902 4.77564 4.86050 4.96721 5.06326 5.08502 5.15969 5.19332 5.33013 5.35396 5.44501 5.45632 5.60015 5.61057 5.64211 5.70532 5.72612 5.78121 5.93655 5.95486 5.99744 6.03267 6.12710 6.19145 6.22927 6.24732 6.26600 6.42993 6.44251 6.48470 6.53900 6.67523 6.74941 6.87031 7.07663 7.47746 7.73565 7.84492 8.43988 8.53289 9.55815 10.12749 10.49034 11.47256 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.004041 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.935874 B = 6927.975399 C = 9062.767727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.202 3.798 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.529 6.529 16 C -0.145 4.145 17 H 0.104 0.896 18 C 0.076 3.924 19 O -0.311 6.311 20 C 0.133 3.867 21 C -0.150 4.150 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.084 4.084 25 C -0.155 4.155 26 C -0.058 4.058 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.183 4.183 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.382 0.618 36 H 0.254 0.746 37 H 0.397 0.603 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 -10.967 8.992 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.584 5.584 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.406 6.406 16 C -0.167 4.167 17 H 0.122 0.878 18 C 0.001 3.999 19 O -0.224 6.224 20 C 0.087 3.913 21 C -0.168 4.168 22 C -0.110 4.110 23 C -0.175 4.175 24 C -0.102 4.102 25 C -0.156 4.156 26 C -0.095 4.095 27 C -0.169 4.169 28 C -0.210 4.210 29 C -0.220 4.220 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.231 0.769 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.141 0.859 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.311 -10.205 8.990 17.067 hybrid contribution 0.993 0.365 -0.196 1.076 sum -9.318 -9.840 8.794 16.155 Atomic orbital electron populations 1.22295 0.94789 1.01550 1.03504 1.20043 0.93049 0.93159 0.82071 1.21050 0.86487 0.91609 0.99300 1.42232 0.99121 1.06160 1.89504 1.19219 0.88986 0.86199 1.41880 0.91422 1.24651 0.96263 0.96621 1.03358 1.69631 1.06691 1.23726 1.58394 0.86244 0.79465 0.83364 0.77489 1.21869 1.21857 1.20855 1.45953 1.54883 1.29982 1.05112 1.19898 0.80939 0.83428 0.83911 1.90633 1.36198 1.27409 1.86327 1.21990 0.97740 1.02090 0.94859 0.87794 1.22978 0.90267 0.98899 0.87769 1.86035 1.60021 1.63047 1.13305 1.18789 0.91388 0.95762 0.85336 1.20612 1.00721 1.05109 0.90389 1.20890 0.95796 0.98060 0.96287 1.20978 0.95970 1.02030 0.98473 1.20886 0.99681 0.98504 0.91175 1.19907 0.95297 1.04303 0.96046 1.20295 0.98802 1.01408 0.89027 1.22578 1.00821 0.96830 0.96634 1.23046 0.99176 1.02826 0.95939 1.22938 1.04012 0.91588 1.03495 0.91676 0.90254 0.93025 0.95814 0.93719 0.78436 0.93665 0.76881 0.86461 0.90112 0.85279 0.85658 0.86084 0.85847 0.88914 0.89719 0.85946 0.88276 0.88892 0.88914 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.06 37.16 0.26 -2.03 16 2 C 0.20 3.18 0.54 -131.82 -0.07 3.10 16 3 C 0.14 2.95 4.94 -4.04 -0.02 2.93 16 4 N -0.73 -17.59 5.03 -59.91 -0.30 -17.89 16 5 C -0.23 -6.42 9.99 -15.06 -0.15 -6.57 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.94 -27.31 13.06 55.49 0.72 -26.59 16 9 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.71 -10.36 4.57 -47.60 -0.22 -10.58 16 14 C 0.53 8.40 6.56 -10.98 -0.07 8.33 16 15 O -0.53 -9.88 12.02 5.56 0.07 -9.81 16 16 C -0.15 -1.97 2.76 -91.53 -0.25 -2.23 16 17 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.08 1.16 6.27 37.37 0.23 1.39 16 19 O -0.31 -4.76 10.27 -19.26 -0.20 -4.96 16 20 C 0.13 1.91 6.47 -39.19 -0.25 1.65 16 21 C -0.15 -1.88 9.94 -39.34 -0.39 -2.27 16 22 C -0.09 -0.98 10.04 -39.66 -0.40 -1.38 16 23 C -0.16 -1.64 10.04 -39.61 -0.40 -2.04 16 24 C -0.08 -0.98 9.67 -39.53 -0.38 -1.36 16 25 C -0.15 -2.08 5.75 -104.44 -0.60 -2.69 16 26 C -0.06 -0.79 4.67 -27.81 -0.13 -0.92 16 27 C -0.15 -2.18 4.86 -90.63 -0.44 -2.62 16 28 C -0.17 -2.09 9.62 -26.73 -0.26 -2.35 16 29 C -0.18 -2.09 9.71 -26.74 -0.26 -2.35 16 30 H 0.06 0.85 6.81 -51.93 -0.35 0.50 16 31 H 0.08 1.26 6.13 -51.93 -0.32 0.94 16 32 H 0.05 0.64 7.00 -51.93 -0.36 0.27 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 1.03 6.22 -51.93 -0.32 0.70 16 35 H 0.38 9.42 6.63 -40.82 -0.27 9.15 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.40 5.05 8.03 -40.82 -0.33 4.72 16 38 H 0.12 1.71 7.70 -51.93 -0.40 1.31 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.09 1.44 7.69 -51.93 -0.40 1.04 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.12 2.16 7.09 -51.93 -0.37 1.79 16 47 H 0.10 1.12 5.88 -51.93 -0.31 0.81 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.09 0.97 7.39 -51.93 -0.38 0.58 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -31.45 394.00 -10.27 -41.72 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -7.59 Total: 16.50 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.68 Total: -11.87 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.21 Total: -55.06 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.13 Total: -14.77 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.45 -10.27 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481935033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.117 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds