Wall clock time and date at job start Wed Apr 1 2020 04:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46892 * 2 1 4 4 N 1.46497 * 109.46660 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99669 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.38811 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31624 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47482 * 89.99767 * 9 7 5 11 11 H 1.48502 * 109.46743 * 210.00323 * 9 7 5 12 12 H 1.48503 * 109.46756 * 329.99586 * 9 7 5 13 13 N 1.46502 * 109.47066 * 119.99976 * 2 1 3 14 14 C 1.34782 * 119.99890 * 298.23901 * 13 2 1 15 15 O 1.21280 * 120.00201 * 5.12572 * 14 13 2 16 16 C 1.50700 * 120.00017 * 185.13005 * 14 13 2 17 17 H 1.09002 * 109.69103 * 300.55324 * 16 14 13 18 18 C 1.53404 * 109.69810 * 61.14773 * 16 14 13 19 19 O 1.42825 * 108.37327 * 184.41297 * 18 16 14 20 20 C 1.35846 * 117.85848 * 310.80027 * 19 18 16 21 21 C 1.39152 * 118.49738 * 196.97161 * 20 19 18 22 22 C 1.37968 * 120.21623 * 180.40348 * 21 20 19 23 23 C 1.38283 * 119.95575 * 0.02562 * 22 21 20 24 24 C 1.38110 * 119.98839 * 359.93139 * 23 22 21 25 25 C 1.38368 * 121.80558 * 17.26345 * 20 19 18 26 26 C 1.50771 * 121.40347 * 359.47281 * 25 20 19 27 27 C 1.52996 * 109.47125 * 239.99639 * 2 1 3 28 28 C 1.53000 * 117.49913 * 12.03828 * 27 2 1 29 29 C 1.52993 * 117.50267 * 303.41464 * 27 2 1 30 30 H 1.08995 * 109.46882 * 60.00101 * 1 2 3 31 31 H 1.08998 * 109.47071 * 299.99598 * 1 2 3 32 32 H 1.09005 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46866 * 300.00009 * 3 2 1 34 34 H 1.08998 * 109.46935 * 60.00319 * 3 2 1 35 35 H 0.96999 * 120.00550 * 359.97438 * 4 3 2 36 36 H 0.96998 * 119.99857 * 180.02562 * 8 7 5 37 37 H 0.96999 * 119.99887 * 118.23715 * 13 2 1 38 38 H 1.09002 * 109.68843 * 304.13703 * 18 16 14 39 39 H 1.08997 * 109.67973 * 64.69856 * 18 16 14 40 40 H 1.08000 * 119.88799 * 0.40338 * 21 20 19 41 41 H 1.07995 * 120.01744 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00905 * 179.91673 * 23 22 21 43 43 H 1.07993 * 119.84522 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.43551 * 257.76628 * 26 25 20 45 45 H 1.09005 * 109.39647 * 137.87580 * 26 25 20 46 46 H 1.09005 * 115.54903 * 157.73903 * 27 2 1 47 47 H 1.08999 * 117.49888 * 359.97438 * 28 27 2 48 48 H 1.09000 * 117.49985 * 145.01390 * 28 27 2 49 49 H 1.09001 * 117.49936 * 214.98115 * 29 27 2 50 50 H 1.09000 * 117.49935 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1896 2.6284 -0.0013 6 1 3.6496 3.5637 -0.0017 7 6 5.5778 2.6285 -0.0013 8 7 6.2359 1.4886 -0.0002 9 14 6.5118 4.2462 -0.0015 10 1 6.7593 4.6751 1.3985 11 1 7.8093 4.0685 -0.7016 12 1 5.7092 5.2811 -0.7017 13 7 2.0184 -0.6906 1.1962 14 6 1.7223 -0.2098 2.4200 15 8 0.9758 0.7392 2.5344 16 6 2.3189 -0.8513 3.6462 17 1 2.0251 -1.9000 3.6919 18 6 3.8482 -0.7437 3.5940 19 8 4.3876 -1.4484 4.7130 20 6 3.8648 -1.1876 5.9394 21 6 4.5875 -1.5723 7.0647 22 6 4.0861 -1.3323 8.3274 23 6 2.8612 -0.7081 8.4768 24 6 2.1416 -0.3242 7.3623 25 6 2.6409 -0.5606 6.0921 26 6 1.8282 -0.1230 4.9000 27 6 2.0400 -0.7213 -1.2492 28 6 1.0241 -1.0305 -2.3506 29 6 1.5710 -2.1599 -1.4753 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6025 -0.0006 36 1 7.2059 1.4887 0.0001 37 1 2.5547 -1.4939 1.1074 38 1 4.2162 -1.1871 2.6687 39 1 4.1443 0.3042 3.6426 40 1 5.5440 -2.0602 6.9491 41 1 4.6498 -1.6318 9.1985 42 1 2.4672 -0.5211 9.4648 43 1 1.1854 0.1635 7.4817 44 1 1.9381 0.9525 4.7611 45 1 0.7783 -0.3614 5.0704 46 1 3.0549 -0.4686 -1.5566 47 1 -0.0076 -0.7204 -2.1852 48 1 1.3704 -0.9811 -3.3830 49 1 2.2770 -2.8536 -1.9317 50 1 0.8993 -2.5927 -0.7339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481935033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:44 Heat of formation + Delta-G solvation = -29.250177 kcal Electronic energy + Delta-G solvation = -31326.657393 eV Core-core repulsion = 27319.279619 eV Total energy + Delta-G solvation = -4007.377773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08947 -41.09656 -39.13788 -38.37972 -36.38704 -35.24581 -35.03428 -33.13771 -31.96241 -31.19953 -30.73691 -27.58770 -26.78458 -25.87424 -24.81586 -24.05976 -23.51264 -23.12370 -21.93312 -20.60070 -20.14880 -19.23159 -18.83657 -18.63996 -17.40246 -17.15084 -16.84202 -16.46115 -16.32909 -16.21384 -15.80137 -15.50408 -15.24696 -15.06897 -14.95678 -14.70329 -14.37632 -14.24486 -14.15151 -13.87619 -13.71088 -13.65118 -13.18935 -13.08627 -12.82420 -12.72679 -12.50383 -12.45229 -12.23332 -12.14527 -12.06487 -12.01608 -11.87843 -11.76069 -11.56175 -11.23494 -11.07172 -10.91602 -10.52702 -9.96464 -9.74456 -9.15491 -8.93935 -7.95491 -5.20814 0.35578 0.45637 1.43047 1.44218 1.52118 1.57415 2.08616 2.27613 2.54097 2.80870 3.02598 3.37270 3.41269 3.52556 3.62474 3.66899 3.82734 3.89593 3.96222 3.99807 4.10014 4.18146 4.25027 4.26822 4.34824 4.45509 4.47835 4.49885 4.60346 4.65174 4.72499 4.79494 4.87547 4.88277 4.90861 4.94545 4.99450 5.03781 5.09661 5.13551 5.29945 5.33302 5.35057 5.45485 5.49173 5.52007 5.58890 5.67074 5.86135 6.27062 6.40531 6.62650 7.28728 7.35363 8.09506 8.38580 9.26928 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.004041 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.935874 B = 6927.975399 C = 9062.767727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.727 5.727 5 C -0.242 4.242 6 H 0.061 0.939 7 C -0.063 4.063 8 N -0.959 5.959 9 Si 0.961 3.039 10 H -0.293 1.293 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.529 3.471 15 O -0.560 6.560 16 C -0.132 4.132 17 H 0.131 0.869 18 C 0.084 3.916 19 O -0.321 6.321 20 C 0.099 3.901 21 C -0.162 4.162 22 C -0.088 4.088 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.169 4.169 26 C -0.053 4.053 27 C -0.175 4.175 28 C -0.164 4.164 29 C -0.156 4.156 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.408 0.592 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.141 0.859 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 -12.493 10.055 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 C 0.018 3.982 4 N -0.370 5.370 5 C -0.374 4.374 6 H 0.079 0.921 7 C -0.257 4.257 8 N -0.609 5.609 9 Si 0.791 3.209 10 H -0.220 1.220 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.352 5.352 14 C 0.316 3.684 15 O -0.439 6.439 16 C -0.154 4.154 17 H 0.149 0.851 18 C 0.009 3.991 19 O -0.235 6.235 20 C 0.055 3.945 21 C -0.180 4.180 22 C -0.105 4.105 23 C -0.168 4.168 24 C -0.109 4.109 25 C -0.170 4.170 26 C -0.090 4.090 27 C -0.194 4.194 28 C -0.201 4.201 29 C -0.193 4.193 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.212 0.788 36 H 0.059 0.941 37 H 0.244 0.756 38 H 0.137 0.863 39 H 0.060 0.940 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.159 0.841 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.131 0.869 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.510 -11.745 10.047 19.271 hybrid contribution 1.353 0.874 -0.446 1.671 sum -10.157 -10.871 9.601 17.707 Atomic orbital electron populations 1.22210 0.92890 1.03047 1.03033 1.19841 0.94206 0.90278 0.83102 1.21076 0.84369 0.95243 0.97531 1.42268 1.00619 1.05022 1.89113 1.19491 0.89580 0.87167 1.41209 0.92077 1.25320 0.96997 0.99503 1.03831 1.69756 1.06512 1.25253 1.59423 0.85326 0.78176 0.80233 0.77175 1.22031 1.21724 1.19952 1.45924 1.54590 1.30073 1.04638 1.20271 0.80465 0.82999 0.84696 1.90622 1.37737 1.28728 1.86830 1.21916 0.96186 1.03368 0.93892 0.85094 1.22737 0.91490 0.96664 0.88244 1.86011 1.60571 1.63124 1.13792 1.19152 0.92411 0.97682 0.85274 1.20891 1.01085 1.05323 0.90750 1.21304 0.95970 0.96854 0.96416 1.21404 0.95514 1.00419 0.99491 1.21193 1.00612 0.98342 0.90771 1.19977 0.95278 1.05050 0.96717 1.20213 0.99779 0.99648 0.89369 1.22260 0.99874 1.00038 0.97259 1.23173 0.98981 1.02385 0.95558 1.23025 1.03392 0.89955 1.02884 0.90668 0.92229 0.90414 0.96464 0.96267 0.78824 0.94060 0.75647 0.86319 0.93998 0.84638 0.82468 0.82914 0.84089 0.91705 0.88328 0.89514 0.86941 0.88410 0.87856 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 7.06 71.98 0.51 -3.61 16 2 C 0.21 6.65 0.54 3.60 0.00 6.66 16 3 C 0.15 6.22 4.94 86.38 0.43 6.65 16 4 N -0.73 -36.74 5.03 -343.46 -1.73 -38.47 16 5 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 6 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 7 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 8 N -0.96 -57.43 13.06 21.65 0.28 -57.15 16 9 Si 0.96 47.26 29.55 68.60 2.03 49.29 16 10 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.70 -20.63 4.57 -422.91 -1.93 -22.56 16 14 C 0.53 17.10 6.56 87.66 0.57 17.67 16 15 O -0.56 -21.70 12.02 -3.03 -0.04 -21.74 16 16 C -0.13 -3.67 2.76 -11.38 -0.03 -3.70 16 17 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 18 C 0.08 2.71 6.27 72.12 0.45 3.16 16 19 O -0.32 -10.19 10.27 -91.82 -0.94 -11.14 16 20 C 0.10 2.88 6.47 22.52 0.15 3.03 16 21 C -0.16 -3.93 9.94 22.43 0.22 -3.71 16 22 C -0.09 -1.64 10.04 22.22 0.22 -1.42 16 23 C -0.15 -2.72 10.04 22.25 0.22 -2.50 16 24 C -0.09 -1.98 9.67 22.30 0.22 -1.77 16 25 C -0.17 -4.55 5.75 -19.75 -0.11 -4.67 16 26 C -0.05 -1.47 4.67 29.89 0.14 -1.33 16 27 C -0.18 -5.00 4.86 -10.80 -0.05 -5.05 16 28 C -0.16 -3.60 9.62 30.59 0.29 -3.30 16 29 C -0.16 -3.14 9.71 30.59 0.30 -2.84 16 30 H 0.07 1.85 6.81 -2.39 -0.02 1.83 16 31 H 0.06 1.87 6.13 -2.39 -0.01 1.86 16 32 H 0.08 1.69 7.00 -2.38 -0.02 1.67 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.02 0.93 6.22 -2.39 -0.01 0.92 16 35 H 0.38 19.50 6.63 -92.71 -0.61 18.88 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.41 10.22 8.03 -92.71 -0.74 9.48 16 38 H 0.12 3.66 7.70 -2.39 -0.02 3.65 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.06 2.15 7.69 -2.39 -0.02 2.13 16 45 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.09 3.15 7.09 -2.38 -0.02 3.13 16 47 H 0.11 2.19 5.88 -2.39 -0.01 2.17 16 48 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.11 1.86 7.39 -2.39 -0.02 1.85 16 Total: -1.00 -70.70 394.00 2.11 -68.59 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.39 Total: 46.16 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.83 Total: -12.99 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.38 Total: -118.18 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.98 Total: -32.87 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -70.70 2.11 -68.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481935033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.338 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds