Wall clock time and date at job start Wed Apr 1 2020 04:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46857 * 2 1 4 4 N 1.46502 * 109.46986 * 300.00097 * 3 2 1 5 5 C 1.36939 * 120.00088 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99850 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00184 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47105 * 90.00312 * 9 7 5 11 11 H 1.48497 * 109.47110 * 210.00444 * 9 7 5 12 12 H 1.48503 * 109.46829 * 330.00243 * 9 7 5 13 13 N 1.46499 * 109.47395 * 240.00290 * 2 1 3 14 14 C 1.34778 * 119.99811 * 174.49029 * 13 2 1 15 15 O 1.21278 * 120.00285 * 5.20477 * 14 13 2 16 16 C 1.50704 * 119.99764 * 185.19990 * 14 13 2 17 17 H 1.08999 * 109.69222 * 300.55642 * 16 14 13 18 18 C 1.53405 * 109.69841 * 61.15513 * 16 14 13 19 19 O 1.42824 * 108.37475 * 184.41192 * 18 16 14 20 20 C 1.35849 * 117.85770 * 310.79688 * 19 18 16 21 21 C 1.39147 * 118.49547 * 196.96942 * 20 19 18 22 22 C 1.37965 * 120.21313 * 180.40003 * 21 20 19 23 23 C 1.38281 * 119.95916 * 0.02562 * 22 21 20 24 24 C 1.38113 * 119.98642 * 359.93182 * 23 22 21 25 25 C 1.38368 * 121.80196 * 17.26350 * 20 19 18 26 26 C 1.50769 * 121.40773 * 359.47624 * 25 20 19 27 27 C 1.52993 * 109.47263 * 119.99751 * 2 1 3 28 28 C 1.52993 * 117.50078 * 122.28702 * 27 2 1 29 29 C 1.52996 * 60.00216 * 252.50981 * 28 27 2 30 30 H 1.09007 * 109.47222 * 60.00184 * 1 2 3 31 31 H 1.08997 * 109.47785 * 300.00282 * 1 2 3 32 32 H 1.09003 * 109.46746 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47153 * 59.99331 * 3 2 1 34 34 H 1.08997 * 109.47017 * 179.97438 * 3 2 1 35 35 H 0.96993 * 120.00103 * 359.97438 * 4 3 2 36 36 H 0.96997 * 119.99985 * 179.97438 * 8 7 5 37 37 H 0.96999 * 120.00051 * 354.48610 * 13 2 1 38 38 H 1.08997 * 109.68298 * 304.13528 * 18 16 14 39 39 H 1.09001 * 109.68276 * 64.69456 * 18 16 14 40 40 H 1.08001 * 119.89092 * 0.40935 * 21 20 19 41 41 H 1.08003 * 120.01916 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.01147 * 179.91168 * 23 22 21 43 43 H 1.07997 * 119.84435 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.43082 * 257.76573 * 26 25 20 45 45 H 1.08997 * 109.39984 * 137.87678 * 26 25 20 46 46 H 1.09007 * 115.54776 * 267.99726 * 27 2 1 47 47 H 1.09000 * 117.49906 * 0.02562 * 28 27 2 48 48 H 1.09004 * 117.50158 * 145.01706 * 28 27 2 49 49 H 1.08999 * 117.49927 * 252.50658 * 29 28 27 50 50 H 1.09007 * 117.49857 * 107.48490 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8827 3.4441 -1.4132 6 1 2.5036 3.9690 -0.7023 7 6 1.4203 4.0982 -2.5468 8 7 0.6632 3.4587 -3.4129 9 14 1.8715 5.8867 -2.8425 10 1 3.1345 5.9565 -3.6204 11 1 0.7839 6.5522 -3.6036 12 1 2.0548 6.5730 -1.5384 13 7 2.0183 -0.6905 -1.1962 14 6 3.3384 -0.7174 -1.4670 15 8 4.1297 -0.2530 -0.6739 16 6 3.8310 -1.3249 -2.7552 17 1 3.5248 -2.3695 -2.8094 18 6 3.2502 -0.5523 -3.9465 19 8 3.6499 -1.2118 -5.1487 20 6 4.9631 -1.5281 -5.2928 21 6 5.4368 -1.8330 -6.5651 22 6 6.7624 -2.1673 -6.7507 23 6 7.6242 -2.2003 -5.6698 24 6 7.1577 -1.8973 -4.4056 25 6 5.8284 -1.5591 -4.2134 26 6 5.3575 -1.2308 -2.8193 27 6 2.0400 -0.7212 1.2492 28 6 2.9589 -1.9269 1.0432 29 6 1.5173 -2.1350 1.5116 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6765 1.9564 0.8899 34 1 3.1299 1.4426 0.0005 35 1 0.9942 1.6616 -1.8348 36 1 0.3399 3.9159 -4.2049 37 1 1.3917 -1.1284 -1.7932 38 1 2.1624 -0.5381 -3.8797 39 1 3.6321 0.4686 -3.9434 40 1 4.7646 -1.8078 -7.4100 41 1 7.1268 -2.4030 -7.7397 42 1 8.6618 -2.4632 -5.8140 43 1 7.8329 -1.9234 -3.5631 44 1 5.6698 -0.2192 -2.5599 45 1 5.7945 -1.9374 -2.1137 46 1 2.2291 -0.0858 2.1145 47 1 3.2005 -2.2062 0.0176 48 1 3.7531 -2.0850 1.7729 49 1 1.3630 -2.4300 2.5495 50 1 0.8101 -2.5513 0.7942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481935035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:52 Heat of formation + Delta-G solvation = -3.191720 kcal Electronic energy + Delta-G solvation = -31630.238635 eV Core-core repulsion = 27623.990841 eV Total energy + Delta-G solvation = -4006.247794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.02506 -40.05429 -37.63879 -37.12973 -35.00828 -34.06075 -33.39126 -31.64758 -30.50172 -30.22006 -29.43314 -26.06803 -25.65903 -24.50392 -23.68228 -22.57603 -22.10869 -21.46844 -21.11649 -19.58839 -19.02358 -17.81179 -17.42106 -17.16945 -16.31638 -15.98661 -15.61931 -15.38216 -14.88225 -14.70747 -14.41514 -14.21948 -13.92085 -13.69849 -13.40404 -13.28870 -13.25579 -13.11722 -12.92388 -12.79615 -12.15975 -12.09968 -11.90642 -11.77854 -11.47871 -11.31720 -11.11149 -11.08935 -10.87579 -10.81213 -10.75758 -10.71376 -10.53755 -10.21449 -10.07234 -9.84710 -9.67889 -9.26904 -8.82386 -8.77071 -8.61351 -8.14200 -6.85384 -5.75442 -3.01439 1.28678 1.41023 2.88324 3.30092 3.42685 3.45286 3.50928 3.51712 3.75986 4.02094 4.55406 4.60135 4.63597 4.74327 4.85635 4.86198 4.96989 5.07282 5.10877 5.14874 5.21335 5.33848 5.41884 5.45582 5.53475 5.60510 5.62977 5.67840 5.71613 5.71746 5.76324 5.94121 5.97456 6.00277 6.03035 6.14152 6.15499 6.26305 6.26939 6.28041 6.36425 6.44822 6.49054 6.57336 6.61685 6.75374 6.89760 7.11911 7.47912 7.73937 7.83326 8.44426 8.56673 9.56150 10.13220 10.49260 11.47615 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007950 B = 0.004459 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.137144 B = 6278.579976 C = 8801.553677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.715 5.715 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.146 4.146 17 H 0.102 0.898 18 C 0.076 3.924 19 O -0.311 6.311 20 C 0.133 3.867 21 C -0.150 4.150 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.058 4.058 27 C -0.142 4.142 28 C -0.157 4.157 29 C -0.186 4.186 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.051 0.949 35 H 0.381 0.619 36 H 0.253 0.747 37 H 0.395 0.605 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -16.654 0.371 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.585 5.585 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.366 5.366 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.168 4.168 17 H 0.121 0.879 18 C 0.001 3.999 19 O -0.225 6.225 20 C 0.087 3.913 21 C -0.168 4.168 22 C -0.110 4.110 23 C -0.174 4.174 24 C -0.102 4.102 25 C -0.155 4.155 26 C -0.095 4.095 27 C -0.162 4.162 28 C -0.194 4.194 29 C -0.223 4.223 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.215 0.785 36 H 0.063 0.937 37 H 0.229 0.771 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.859 -16.140 0.856 17.558 hybrid contribution -0.205 0.791 -0.517 0.967 sum 6.654 -15.349 0.339 16.733 Atomic orbital electron populations 1.21987 0.93125 1.01347 1.04084 1.20072 0.93683 0.92536 0.82253 1.21089 0.98799 0.87757 0.91008 1.42242 1.61259 1.10477 1.23064 1.19212 1.25028 0.87674 1.04254 0.91440 1.24646 1.00711 0.98070 0.97501 1.69627 1.39654 1.36061 1.13152 0.86242 0.77402 0.85253 0.77654 1.21885 1.21858 1.20860 1.46021 1.07202 1.56539 1.26840 1.19767 0.82597 0.78950 0.86839 1.90688 1.54761 1.45317 1.48463 1.22015 0.98090 1.01859 0.94842 0.87949 1.22969 1.01121 0.95604 0.80199 1.86029 1.21628 1.73882 1.40928 1.18782 0.83417 0.95834 0.93237 1.20607 0.96145 1.05210 0.94875 1.20888 0.92591 0.98624 0.98940 1.20979 0.99814 1.03879 0.92770 1.20889 0.94095 0.97786 0.97474 1.19908 0.94742 1.05973 0.94890 1.20292 0.92584 1.04167 0.92471 1.22521 1.04045 0.90209 0.99396 1.22880 0.92486 1.02059 1.01981 1.22979 0.97801 1.00059 1.01510 0.90721 0.91020 0.92887 0.96040 0.93173 0.78475 0.93675 0.77121 0.86589 0.90022 0.85294 0.85664 0.86085 0.85849 0.88872 0.89738 0.87517 0.89128 0.89639 0.89433 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.18 37.15 0.30 -1.79 16 2 C 0.20 3.10 0.55 -131.82 -0.07 3.03 16 3 C 0.14 2.89 4.83 -4.04 -0.02 2.87 16 4 N -0.73 -17.55 5.17 -59.91 -0.31 -17.86 16 5 C -0.23 -6.39 9.99 -15.06 -0.15 -6.54 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.94 -27.32 13.06 55.49 0.72 -26.60 16 9 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.71 -10.17 4.03 -47.61 -0.19 -10.36 16 14 C 0.53 8.25 4.42 -10.98 -0.05 8.20 16 15 O -0.52 -9.55 11.73 5.56 0.07 -9.49 16 16 C -0.15 -1.98 2.76 -91.52 -0.25 -2.23 16 17 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.08 1.15 6.27 37.37 0.23 1.39 16 19 O -0.31 -4.76 10.27 -19.27 -0.20 -4.96 16 20 C 0.13 1.91 6.47 -39.20 -0.25 1.66 16 21 C -0.15 -1.89 9.94 -39.34 -0.39 -2.28 16 22 C -0.09 -0.99 10.04 -39.67 -0.40 -1.39 16 23 C -0.16 -1.65 10.04 -39.61 -0.40 -2.05 16 24 C -0.08 -0.99 9.67 -39.53 -0.38 -1.37 16 25 C -0.15 -2.09 5.75 -104.44 -0.60 -2.69 16 26 C -0.06 -0.79 4.67 -27.81 -0.13 -0.92 16 27 C -0.14 -1.99 4.82 -90.63 -0.44 -2.42 16 28 C -0.16 -2.07 8.28 -26.74 -0.22 -2.29 16 29 C -0.19 -2.14 9.68 -26.73 -0.26 -2.40 16 30 H 0.07 1.22 6.86 -51.92 -0.36 0.86 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.61 6.92 -51.93 -0.36 0.25 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 1.15 5.96 -51.93 -0.31 0.84 16 35 H 0.38 9.36 6.35 -40.82 -0.26 9.10 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.40 4.76 8.14 -40.82 -0.33 4.43 16 38 H 0.12 1.66 7.70 -51.93 -0.40 1.26 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.09 1.46 7.69 -51.93 -0.40 1.07 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.11 1.53 8.06 -51.92 -0.42 1.11 16 47 H 0.09 1.24 5.12 -51.93 -0.27 0.98 16 48 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.09 0.97 7.21 -51.93 -0.37 0.59 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -31.59 392.35 -10.26 -41.86 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -7.67 Total: 15.66 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.57 Total: -11.72 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.22 Total: -54.82 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.13 Total: -14.45 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.59 -10.26 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481935035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.665 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds