Wall clock time and date at job start Wed Apr 1 2020 04:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46857 * 2 1 4 4 N 1.46502 * 109.46986 * 300.00097 * 3 2 1 5 5 C 1.36939 * 120.00088 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99850 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00184 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47105 * 90.00312 * 9 7 5 11 11 H 1.48497 * 109.47110 * 210.00444 * 9 7 5 12 12 H 1.48503 * 109.46829 * 330.00243 * 9 7 5 13 13 N 1.46499 * 109.47395 * 240.00290 * 2 1 3 14 14 C 1.34778 * 119.99811 * 174.49029 * 13 2 1 15 15 O 1.21278 * 120.00285 * 5.20477 * 14 13 2 16 16 C 1.50704 * 119.99764 * 185.19990 * 14 13 2 17 17 H 1.08999 * 109.69222 * 300.55642 * 16 14 13 18 18 C 1.53405 * 109.69841 * 61.15513 * 16 14 13 19 19 O 1.42824 * 108.37475 * 184.41192 * 18 16 14 20 20 C 1.35849 * 117.85770 * 310.79688 * 19 18 16 21 21 C 1.39147 * 118.49547 * 196.96942 * 20 19 18 22 22 C 1.37965 * 120.21313 * 180.40003 * 21 20 19 23 23 C 1.38281 * 119.95916 * 0.02562 * 22 21 20 24 24 C 1.38113 * 119.98642 * 359.93182 * 23 22 21 25 25 C 1.38368 * 121.80196 * 17.26350 * 20 19 18 26 26 C 1.50769 * 121.40773 * 359.47624 * 25 20 19 27 27 C 1.52993 * 109.47263 * 119.99751 * 2 1 3 28 28 C 1.52993 * 117.50078 * 122.28702 * 27 2 1 29 29 C 1.52996 * 60.00216 * 252.50981 * 28 27 2 30 30 H 1.09007 * 109.47222 * 60.00184 * 1 2 3 31 31 H 1.08997 * 109.47785 * 300.00282 * 1 2 3 32 32 H 1.09003 * 109.46746 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47153 * 59.99331 * 3 2 1 34 34 H 1.08997 * 109.47017 * 179.97438 * 3 2 1 35 35 H 0.96993 * 120.00103 * 359.97438 * 4 3 2 36 36 H 0.96997 * 119.99985 * 179.97438 * 8 7 5 37 37 H 0.96999 * 120.00051 * 354.48610 * 13 2 1 38 38 H 1.08997 * 109.68298 * 304.13528 * 18 16 14 39 39 H 1.09001 * 109.68276 * 64.69456 * 18 16 14 40 40 H 1.08001 * 119.89092 * 0.40935 * 21 20 19 41 41 H 1.08003 * 120.01916 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.01147 * 179.91168 * 23 22 21 43 43 H 1.07997 * 119.84435 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.43082 * 257.76573 * 26 25 20 45 45 H 1.08997 * 109.39984 * 137.87678 * 26 25 20 46 46 H 1.09007 * 115.54776 * 267.99726 * 27 2 1 47 47 H 1.09000 * 117.49906 * 0.02562 * 28 27 2 48 48 H 1.09004 * 117.50158 * 145.01706 * 28 27 2 49 49 H 1.08999 * 117.49927 * 252.50658 * 29 28 27 50 50 H 1.09007 * 117.49857 * 107.48490 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8827 3.4441 -1.4132 6 1 2.5036 3.9690 -0.7023 7 6 1.4203 4.0982 -2.5468 8 7 0.6632 3.4587 -3.4129 9 14 1.8715 5.8867 -2.8425 10 1 3.1345 5.9565 -3.6204 11 1 0.7839 6.5522 -3.6036 12 1 2.0548 6.5730 -1.5384 13 7 2.0183 -0.6905 -1.1962 14 6 3.3384 -0.7174 -1.4670 15 8 4.1297 -0.2530 -0.6739 16 6 3.8310 -1.3249 -2.7552 17 1 3.5248 -2.3695 -2.8094 18 6 3.2502 -0.5523 -3.9465 19 8 3.6499 -1.2118 -5.1487 20 6 4.9631 -1.5281 -5.2928 21 6 5.4368 -1.8330 -6.5651 22 6 6.7624 -2.1673 -6.7507 23 6 7.6242 -2.2003 -5.6698 24 6 7.1577 -1.8973 -4.4056 25 6 5.8284 -1.5591 -4.2134 26 6 5.3575 -1.2308 -2.8193 27 6 2.0400 -0.7212 1.2492 28 6 2.9589 -1.9269 1.0432 29 6 1.5173 -2.1350 1.5116 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6765 1.9564 0.8899 34 1 3.1299 1.4426 0.0005 35 1 0.9942 1.6616 -1.8348 36 1 0.3399 3.9159 -4.2049 37 1 1.3917 -1.1284 -1.7932 38 1 2.1624 -0.5381 -3.8797 39 1 3.6321 0.4686 -3.9434 40 1 4.7646 -1.8078 -7.4100 41 1 7.1268 -2.4030 -7.7397 42 1 8.6618 -2.4632 -5.8140 43 1 7.8329 -1.9234 -3.5631 44 1 5.6698 -0.2192 -2.5599 45 1 5.7945 -1.9374 -2.1137 46 1 2.2291 -0.0858 2.1145 47 1 3.2005 -2.2062 0.0176 48 1 3.7531 -2.0850 1.7729 49 1 1.3630 -2.4300 2.5495 50 1 0.8101 -2.5513 0.7942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481935035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:51 Heat of formation + Delta-G solvation = -21.852853 kcal Electronic energy + Delta-G solvation = -31631.047842 eV Core-core repulsion = 27623.990841 eV Total energy + Delta-G solvation = -4007.057001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.18224 -41.20480 -38.73105 -38.27621 -36.59123 -35.21090 -34.92590 -33.24183 -31.84777 -31.19437 -30.83493 -27.66128 -26.77357 -25.79909 -25.31563 -23.54564 -23.09680 -22.95121 -22.26303 -20.71843 -20.32548 -19.28363 -18.82808 -18.47157 -17.45071 -17.19391 -16.87747 -16.64421 -16.28491 -15.98825 -15.80276 -15.40468 -15.21528 -15.03254 -14.78949 -14.71468 -14.44231 -14.35718 -14.23929 -13.85756 -13.54786 -13.45186 -13.26104 -12.99483 -12.82933 -12.72544 -12.48850 -12.38649 -12.26583 -12.14948 -12.11414 -11.97762 -11.87986 -11.76568 -11.60115 -11.22155 -11.04409 -10.94029 -10.40875 -9.92200 -9.74626 -9.15533 -8.91861 -7.94847 -5.19733 0.35426 0.45493 1.43416 1.44613 1.52425 1.62672 2.14227 2.30020 2.54289 2.80907 2.98560 3.38624 3.42179 3.53293 3.66360 3.68466 3.82504 3.96277 4.01574 4.02572 4.11505 4.19074 4.26443 4.34642 4.37808 4.40180 4.46114 4.50112 4.58404 4.61664 4.69899 4.82365 4.87784 4.89101 4.92244 4.95109 4.98044 5.09705 5.10559 5.21485 5.30701 5.33408 5.34899 5.37597 5.48625 5.51868 5.58684 5.71815 5.85930 6.28131 6.40481 6.63820 7.34466 7.36645 8.10607 8.39797 9.27591 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007950 B = 0.004459 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.137144 B = 6278.579976 C = 8801.553677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.210 3.790 3 C 0.143 3.857 4 N -0.727 5.727 5 C -0.241 4.241 6 H 0.060 0.940 7 C -0.063 4.063 8 N -0.958 5.958 9 Si 0.960 3.040 10 H -0.294 1.294 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.707 5.707 14 C 0.532 3.468 15 O -0.550 6.550 16 C -0.134 4.134 17 H 0.130 0.870 18 C 0.084 3.916 19 O -0.321 6.321 20 C 0.100 3.900 21 C -0.162 4.162 22 C -0.088 4.088 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.170 4.170 26 C -0.052 4.052 27 C -0.161 4.161 28 C -0.164 4.164 29 C -0.154 4.154 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.016 0.984 34 H 0.024 0.976 35 H 0.379 0.621 36 H 0.250 0.750 37 H 0.408 0.592 38 H 0.121 0.879 39 H 0.040 0.960 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -18.745 0.186 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.123 3.877 3 C 0.016 3.984 4 N -0.371 5.371 5 C -0.373 4.373 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.609 5.609 9 Si 0.790 3.210 10 H -0.221 1.221 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.427 6.427 16 C -0.155 4.155 17 H 0.147 0.853 18 C 0.009 3.991 19 O -0.235 6.235 20 C 0.055 3.945 21 C -0.180 4.180 22 C -0.105 4.105 23 C -0.169 4.169 24 C -0.110 4.110 25 C -0.170 4.170 26 C -0.090 4.090 27 C -0.181 4.181 28 C -0.201 4.201 29 C -0.190 4.190 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.212 0.788 36 H 0.059 0.941 37 H 0.244 0.756 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.158 0.842 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.124 0.876 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.338 -18.252 0.683 19.684 hybrid contribution -0.238 1.436 -0.475 1.531 sum 7.099 -16.816 0.208 18.255 Atomic orbital electron populations 1.21924 0.91692 1.03237 1.02910 1.19857 0.94536 0.89671 0.83594 1.21111 0.97184 0.90986 0.89155 1.42282 1.61034 1.09650 1.24108 1.19469 1.24495 0.89223 1.04099 0.92181 1.25301 1.01234 1.01571 0.97539 1.69747 1.40615 1.37192 1.13363 0.85339 0.76773 0.81279 0.77599 1.22125 1.21701 1.19988 1.45946 1.07140 1.55983 1.26781 1.20082 0.82668 0.78378 0.87038 1.90675 1.55649 1.46731 1.49663 1.21937 0.97993 1.02737 0.92832 0.85258 1.22742 1.01195 0.93835 0.81355 1.86007 1.22702 1.74064 1.40717 1.19144 0.83213 0.97649 0.94466 1.20891 0.97403 1.05360 0.94375 1.21305 0.91601 0.97039 1.00603 1.21402 1.01311 1.02134 0.92004 1.21190 0.93497 0.97358 0.98931 1.19980 0.95725 1.07016 0.94319 1.20198 0.92655 1.02754 0.93345 1.22390 1.06177 0.91267 0.98282 1.22874 0.93734 1.01648 1.01847 1.23068 0.96405 0.96638 1.02931 0.93112 0.90931 0.89402 0.96626 0.95798 0.78777 0.94067 0.75625 0.86111 0.94118 0.84585 0.82452 0.82941 0.84185 0.91847 0.88447 0.88316 0.89682 0.89700 0.87550 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.18 71.98 0.59 -3.21 16 2 C 0.21 6.45 0.55 3.60 0.00 6.45 16 3 C 0.14 6.05 4.83 86.38 0.42 6.47 16 4 N -0.73 -36.36 5.17 -343.44 -1.78 -38.14 16 5 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 6 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 7 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 8 N -0.96 -57.10 13.06 21.65 0.28 -56.82 16 9 Si 0.96 47.18 29.55 68.60 2.03 49.21 16 10 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.71 -20.04 4.03 -422.93 -1.70 -21.74 16 14 C 0.53 16.83 4.42 87.66 0.39 17.21 16 15 O -0.55 -21.09 11.73 -3.02 -0.04 -21.12 16 16 C -0.13 -3.68 2.76 -11.38 -0.03 -3.71 16 17 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 18 C 0.08 2.68 6.27 72.12 0.45 3.14 16 19 O -0.32 -10.12 10.27 -91.85 -0.94 -11.07 16 20 C 0.10 2.90 6.47 22.52 0.15 3.05 16 21 C -0.16 -3.93 9.94 22.42 0.22 -3.71 16 22 C -0.09 -1.65 10.04 22.22 0.22 -1.43 16 23 C -0.15 -2.77 10.04 22.25 0.22 -2.54 16 24 C -0.09 -2.03 9.67 22.31 0.22 -1.81 16 25 C -0.17 -4.60 5.75 -19.75 -0.11 -4.71 16 26 C -0.05 -1.47 4.67 29.89 0.14 -1.33 16 27 C -0.16 -4.36 4.82 -10.80 -0.05 -4.41 16 28 C -0.16 -4.11 8.28 30.59 0.25 -3.85 16 29 C -0.15 -3.06 9.68 30.59 0.30 -2.76 16 30 H 0.05 1.63 6.86 -2.38 -0.02 1.62 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.76 6.92 -2.39 -0.02 1.75 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.02 1.16 5.96 -2.39 -0.01 1.14 16 35 H 0.38 19.18 6.35 -92.71 -0.59 18.60 16 36 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.41 9.48 8.14 -92.71 -0.75 8.72 16 38 H 0.12 3.61 7.70 -2.39 -0.02 3.59 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 44 H 0.06 2.14 7.69 -2.39 -0.02 2.12 16 45 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.10 2.81 8.06 -2.38 -0.02 2.79 16 47 H 0.08 2.23 5.12 -2.39 -0.01 2.22 16 48 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 49 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.10 1.81 7.21 -2.38 -0.02 1.79 16 Total: -1.00 -70.52 392.35 2.15 -68.37 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.38 Total: 44.55 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.68 Total: -13.24 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -3.20 Total: -116.70 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.98 Total: -32.19 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -70.52 2.15 -68.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481935035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.516 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds