Wall clock time and date at job start Wed Apr 1 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 H 1.08993 * 109.46961 * 305.62506 * 3 2 1 5 5 C 1.53003 * 109.46812 * 185.62394 * 3 2 1 6 6 N 1.46906 * 109.46633 * 180.02562 * 5 3 2 7 7 C 1.46905 * 110.99685 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46783 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.58733 * 47.00041 * 8 7 6 10 10 C 1.53194 * 109.58553 * 167.28575 * 8 7 6 11 11 C 1.53042 * 109.31161 * 174.42338 * 10 8 7 12 12 C 1.53037 * 109.53770 * 298.63132 * 11 10 8 13 13 C 1.53199 * 109.31243 * 61.36595 * 12 11 10 14 14 N 1.46924 * 109.58603 * 286.71871 * 8 7 6 15 15 C 1.34778 * 120.63184 * 6.60769 * 14 8 7 16 16 O 1.21282 * 119.99777 * 5.28190 * 15 14 8 17 17 C 1.50700 * 120.00073 * 185.27879 * 15 14 8 18 18 S 1.80993 * 109.47105 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00112 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99839 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00096 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00110 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99752 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47311 * 60.00165 * 23 21 19 25 25 H 1.48506 * 109.46803 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47012 * 299.99862 * 23 21 19 27 27 O 1.42902 * 109.46965 * 65.62755 * 3 2 1 28 28 C 1.42899 * 113.99488 * 254.62247 * 27 3 2 29 29 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47335 * 300.06336 * 1 2 3 31 31 H 1.09002 * 109.46350 * 60.06244 * 1 2 3 32 32 H 1.08999 * 109.47336 * 239.99348 * 2 1 3 33 33 H 1.09004 * 109.47135 * 120.00347 * 2 1 3 34 34 H 1.08996 * 109.47596 * 60.00154 * 5 3 2 35 35 H 1.09002 * 109.47327 * 299.99564 * 5 3 2 36 36 H 1.00898 * 111.00254 * 56.04843 * 6 5 3 37 37 H 1.09005 * 109.46836 * 299.99729 * 7 6 5 38 38 H 1.08996 * 109.47254 * 59.99447 * 7 6 5 39 39 H 1.09005 * 109.49883 * 294.37107 * 10 8 7 40 40 H 1.09004 * 109.49785 * 54.46892 * 10 8 7 41 41 H 1.08992 * 109.46025 * 58.65754 * 11 10 8 42 42 H 1.09003 * 109.45694 * 178.61325 * 11 10 8 43 43 H 1.09001 * 109.49961 * 181.32131 * 12 11 10 44 44 H 1.08999 * 109.49939 * 301.38578 * 12 11 10 45 45 H 1.08999 * 109.58159 * 65.15008 * 13 12 11 46 46 H 1.08996 * 109.58475 * 185.43550 * 13 12 11 47 47 H 1.08998 * 109.47131 * 300.00306 * 17 15 14 48 48 H 1.09003 * 109.46712 * 59.99990 * 17 15 14 49 49 H 0.97002 * 120.00112 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.47251 * 184.81588 * 28 27 3 51 51 H 1.08994 * 109.47236 * 304.81684 * 28 27 3 52 52 H 1.09002 * 109.46890 * 64.82121 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 6 3.5635 1.4447 -0.1414 6 7 4.0532 2.8297 -0.1407 7 6 5.5155 2.8711 -0.2757 8 6 5.9870 4.3266 -0.2717 9 1 5.5062 4.8642 0.5456 10 6 7.5077 4.3733 -0.0928 11 6 7.9892 5.8196 -0.2287 12 6 7.6511 6.3423 -1.6267 13 6 6.1320 6.3179 -1.8231 14 7 5.6387 4.9607 -1.5505 15 6 4.8845 4.3086 -2.4574 16 8 4.4068 3.2278 -2.1842 17 6 4.6348 4.9224 -3.8109 18 16 3.5961 3.8132 -4.7940 19 6 3.4669 4.7517 -6.2797 20 1 3.9606 5.7090 -6.3584 21 6 2.7315 4.2602 -7.3494 22 7 2.1302 3.0932 -7.2537 23 14 2.5952 5.2549 -8.9246 24 1 3.9504 5.4731 -9.4911 25 1 1.7610 4.5158 -9.9061 26 1 1.9652 6.5667 -8.6288 27 8 1.6746 2.0769 1.2272 28 6 0.5987 3.0089 1.1017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3632 0.5129 -0.8906 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8423 0.9608 -1.0774 35 1 4.0068 0.9026 0.6940 36 1 3.7524 3.3193 0.6886 37 1 5.9725 2.3383 0.5582 38 1 5.8074 2.3975 -1.2130 39 1 7.7697 3.9940 0.8950 40 1 7.9830 3.7582 -0.8570 41 1 7.4949 6.4387 0.5199 42 1 9.0679 5.8590 -0.0773 43 1 8.0151 7.3645 -1.7308 44 1 8.1255 5.7091 -2.3764 45 1 5.6632 7.0201 -1.1336 46 1 5.8916 6.5974 -2.8489 47 1 4.1293 5.8802 -3.6878 48 1 5.5857 5.0764 -4.3210 49 1 1.6166 2.7495 -8.0014 50 1 0.4383 3.5095 2.0567 51 1 0.8460 3.7490 0.3407 52 1 -0.3089 2.4793 0.8122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491242332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:16 Heat of formation + Delta-G solvation = -61.073111 kcal Electronic energy + Delta-G solvation = -29734.362745 eV Core-core repulsion = 25861.048977 eV Total energy + Delta-G solvation = -3873.313768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.13168 -38.49159 -36.88692 -35.40263 -33.29723 -32.66746 -32.38056 -31.65673 -28.85111 -28.48579 -26.32789 -25.49622 -25.22912 -24.05865 -22.32075 -21.83657 -20.84743 -20.69257 -18.87940 -17.50603 -16.78463 -16.25717 -15.97429 -15.69880 -15.23449 -15.05624 -14.76822 -14.47863 -14.44679 -14.19326 -13.92194 -13.77946 -13.64944 -13.42646 -13.13941 -13.01478 -12.54625 -12.50768 -12.30521 -12.21149 -12.03748 -11.82739 -11.62889 -11.43537 -11.16287 -11.10160 -11.02044 -10.98939 -10.94880 -10.88043 -10.72901 -10.68874 -10.51838 -10.41693 -9.74075 -9.31419 -9.01595 -8.52616 -8.18128 -8.13677 -7.58864 -6.41378 -6.17412 -3.85627 3.09954 3.25233 3.29215 3.32505 3.41834 3.73503 3.95854 4.25893 4.32385 4.65224 4.75927 4.83222 5.03101 5.12554 5.15047 5.17688 5.20477 5.23681 5.29723 5.32067 5.43637 5.45686 5.49749 5.57329 5.61155 5.63604 5.69266 5.72187 5.75973 5.77624 5.83621 5.88158 5.90998 5.93613 5.95067 5.98512 6.03619 6.07647 6.15891 6.18036 6.23292 6.26598 6.36399 6.39542 6.93415 7.38448 7.44391 7.63381 7.87418 7.90021 8.39322 8.99414 9.28221 10.89816 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006998 B = 0.004276 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4000.426185 B = 6547.117545 C = 9866.303567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.091 3.909 4 H 0.078 0.922 5 C 0.074 3.926 6 N -0.643 5.643 7 C 0.075 3.925 8 C 0.156 3.844 9 H 0.062 0.938 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.136 4.136 13 C 0.111 3.889 14 N -0.616 5.616 15 C 0.519 3.481 16 O -0.456 6.456 17 C -0.149 4.149 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.069 0.931 21 C 0.075 3.925 22 N -0.869 5.869 23 Si 0.915 3.085 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.275 1.275 27 O -0.389 6.389 28 C 0.032 3.968 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.018 0.982 36 H 0.320 0.680 37 H 0.013 0.987 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.267 0.733 50 H 0.076 0.924 51 H 0.047 0.953 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 2.253 17.961 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.096 0.904 5 C -0.055 4.055 6 N -0.274 5.274 7 C -0.054 4.054 8 C 0.052 3.948 9 H 0.080 0.920 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.175 4.175 13 C -0.013 4.013 14 N -0.354 5.354 15 C 0.305 3.695 16 O -0.325 6.325 17 C -0.300 4.300 18 S 0.168 5.832 19 C -0.682 4.682 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.741 3.259 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 O -0.308 6.308 28 C -0.065 4.065 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.036 0.964 36 H 0.138 0.862 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.066 0.934 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.688 0.521 17.751 18.647 hybrid contribution 0.641 1.905 -0.738 2.141 sum 6.329 2.426 17.013 18.313 Atomic orbital electron populations 1.21794 0.95815 1.01513 1.01849 1.21906 0.96360 0.96930 1.02412 1.22274 0.94937 0.92624 0.86871 0.90404 1.21955 0.92952 0.90329 1.00288 1.60703 1.09864 1.14140 1.42676 1.22039 0.88487 0.94231 1.00632 1.21065 0.93613 0.94018 0.86143 0.91994 1.21950 0.95580 0.97323 1.02072 1.21472 1.00679 0.96069 0.97145 1.21935 0.96439 1.01521 0.97580 1.21623 0.93522 0.83940 1.02207 1.47960 1.54009 1.16127 1.17305 1.20119 0.78127 0.86352 0.84918 1.90830 1.45848 1.19900 1.75963 1.23586 1.04728 1.04813 0.96844 1.85239 1.62478 1.25445 1.10024 1.22845 1.37602 1.07555 1.00243 0.91256 1.24948 0.94758 0.95230 0.98517 1.70005 1.31050 1.17440 1.31924 0.86284 0.78269 0.79756 0.81553 1.20004 1.20862 1.20000 1.87791 1.52752 1.57971 1.32285 1.22820 0.89606 0.92228 1.01843 0.92884 0.92608 0.92557 0.90771 0.91755 0.89590 0.96393 0.86198 0.96889 0.89022 0.91248 0.91341 0.91985 0.91945 0.91081 0.91392 0.92115 0.89510 0.90164 0.90138 0.92273 0.90562 0.93449 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.24 37.16 0.34 -1.42 16 2 C -0.14 -1.73 5.64 -26.73 -0.15 -1.88 16 3 C 0.09 1.29 2.52 -26.73 -0.07 1.22 16 4 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 5 C 0.07 1.10 5.03 -3.82 -0.02 1.08 16 6 N -0.64 -9.70 3.93 -113.77 -0.45 -10.14 16 7 C 0.08 1.04 4.32 -3.82 -0.02 1.02 16 8 C 0.16 1.90 3.07 -67.60 -0.21 1.70 16 9 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 10 C -0.13 -1.28 5.34 -26.61 -0.14 -1.42 16 11 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 12 C -0.14 -1.28 6.08 -26.61 -0.16 -1.45 16 13 C 0.11 1.27 6.34 -3.69 -0.02 1.25 16 14 N -0.62 -8.70 2.98 -165.19 -0.49 -9.19 16 15 C 0.52 9.52 7.44 -10.98 -0.08 9.44 16 16 O -0.46 -9.27 9.41 5.56 0.05 -9.22 16 17 C -0.15 -3.04 4.51 36.01 0.16 -2.88 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 23 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 O -0.39 -5.32 9.37 -35.23 -0.33 -5.65 16 28 C 0.03 0.37 10.45 101.05 1.06 1.43 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.42 7.92 -51.93 -0.41 1.01 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.32 4.62 8.06 -39.29 -0.32 4.31 16 37 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 38 H 0.09 1.52 6.36 -51.93 -0.33 1.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.05 5.94 -51.93 -0.31 0.74 16 47 H 0.08 1.58 7.74 -51.92 -0.40 1.17 16 48 H 0.08 1.57 7.90 -51.91 -0.41 1.16 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.05 0.60 8.04 -51.93 -0.42 0.19 16 52 H 0.04 0.43 6.37 -51.93 -0.33 0.10 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -31.87 411.71 -10.32 -42.18 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -9.54 Total: 4.48 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 0.73 Total: -5.96 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.21 Total: -44.70 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.28 Total: -14.87 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.87 -10.32 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491242332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.888 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds