Wall clock time and date at job start Wed Apr 1 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 H 1.08993 * 109.46961 * 305.62506 * 3 2 1 5 5 C 1.53003 * 109.46812 * 185.62394 * 3 2 1 6 6 N 1.46906 * 109.46633 * 180.02562 * 5 3 2 7 7 C 1.46905 * 110.99685 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46783 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.58733 * 47.00041 * 8 7 6 10 10 C 1.53194 * 109.58553 * 167.28575 * 8 7 6 11 11 C 1.53042 * 109.31161 * 174.42338 * 10 8 7 12 12 C 1.53037 * 109.53770 * 298.63132 * 11 10 8 13 13 C 1.53199 * 109.31243 * 61.36595 * 12 11 10 14 14 N 1.46924 * 109.58603 * 286.71871 * 8 7 6 15 15 C 1.34778 * 120.63184 * 6.60769 * 14 8 7 16 16 O 1.21282 * 119.99777 * 5.28190 * 15 14 8 17 17 C 1.50700 * 120.00073 * 185.27879 * 15 14 8 18 18 S 1.80993 * 109.47105 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00112 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99839 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00096 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00110 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99752 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47311 * 60.00165 * 23 21 19 25 25 H 1.48506 * 109.46803 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47012 * 299.99862 * 23 21 19 27 27 O 1.42902 * 109.46965 * 65.62755 * 3 2 1 28 28 C 1.42899 * 113.99488 * 254.62247 * 27 3 2 29 29 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47335 * 300.06336 * 1 2 3 31 31 H 1.09002 * 109.46350 * 60.06244 * 1 2 3 32 32 H 1.08999 * 109.47336 * 239.99348 * 2 1 3 33 33 H 1.09004 * 109.47135 * 120.00347 * 2 1 3 34 34 H 1.08996 * 109.47596 * 60.00154 * 5 3 2 35 35 H 1.09002 * 109.47327 * 299.99564 * 5 3 2 36 36 H 1.00898 * 111.00254 * 56.04843 * 6 5 3 37 37 H 1.09005 * 109.46836 * 299.99729 * 7 6 5 38 38 H 1.08996 * 109.47254 * 59.99447 * 7 6 5 39 39 H 1.09005 * 109.49883 * 294.37107 * 10 8 7 40 40 H 1.09004 * 109.49785 * 54.46892 * 10 8 7 41 41 H 1.08992 * 109.46025 * 58.65754 * 11 10 8 42 42 H 1.09003 * 109.45694 * 178.61325 * 11 10 8 43 43 H 1.09001 * 109.49961 * 181.32131 * 12 11 10 44 44 H 1.08999 * 109.49939 * 301.38578 * 12 11 10 45 45 H 1.08999 * 109.58159 * 65.15008 * 13 12 11 46 46 H 1.08996 * 109.58475 * 185.43550 * 13 12 11 47 47 H 1.08998 * 109.47131 * 300.00306 * 17 15 14 48 48 H 1.09003 * 109.46712 * 59.99990 * 17 15 14 49 49 H 0.97002 * 120.00112 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.47251 * 184.81588 * 28 27 3 51 51 H 1.08994 * 109.47236 * 304.81684 * 28 27 3 52 52 H 1.09002 * 109.46890 * 64.82121 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 6 3.5635 1.4447 -0.1414 6 7 4.0532 2.8297 -0.1407 7 6 5.5155 2.8711 -0.2757 8 6 5.9870 4.3266 -0.2717 9 1 5.5062 4.8642 0.5456 10 6 7.5077 4.3733 -0.0928 11 6 7.9892 5.8196 -0.2287 12 6 7.6511 6.3423 -1.6267 13 6 6.1320 6.3179 -1.8231 14 7 5.6387 4.9607 -1.5505 15 6 4.8845 4.3086 -2.4574 16 8 4.4068 3.2278 -2.1842 17 6 4.6348 4.9224 -3.8109 18 16 3.5961 3.8132 -4.7940 19 6 3.4669 4.7517 -6.2797 20 1 3.9606 5.7090 -6.3584 21 6 2.7315 4.2602 -7.3494 22 7 2.1302 3.0932 -7.2537 23 14 2.5952 5.2549 -8.9246 24 1 3.9504 5.4731 -9.4911 25 1 1.7610 4.5158 -9.9061 26 1 1.9652 6.5667 -8.6288 27 8 1.6746 2.0769 1.2272 28 6 0.5987 3.0089 1.1017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3632 0.5129 -0.8906 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8423 0.9608 -1.0774 35 1 4.0068 0.9026 0.6940 36 1 3.7524 3.3193 0.6886 37 1 5.9725 2.3383 0.5582 38 1 5.8074 2.3975 -1.2130 39 1 7.7697 3.9940 0.8950 40 1 7.9830 3.7582 -0.8570 41 1 7.4949 6.4387 0.5199 42 1 9.0679 5.8590 -0.0773 43 1 8.0151 7.3645 -1.7308 44 1 8.1255 5.7091 -2.3764 45 1 5.6632 7.0201 -1.1336 46 1 5.8916 6.5974 -2.8489 47 1 4.1293 5.8802 -3.6878 48 1 5.5857 5.0764 -4.3210 49 1 1.6166 2.7495 -8.0014 50 1 0.4383 3.5095 2.0567 51 1 0.8460 3.7490 0.3407 52 1 -0.3089 2.4793 0.8122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491242332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:14 Heat of formation + Delta-G solvation = -80.581854 kcal Electronic energy + Delta-G solvation = -29735.208707 eV Core-core repulsion = 25861.048977 eV Total energy + Delta-G solvation = -3874.159731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.32662 -39.59779 -38.06533 -36.54691 -34.56539 -34.34637 -33.74802 -32.65817 -30.30223 -29.59369 -27.66467 -27.31500 -26.33141 -25.02967 -23.36565 -22.98584 -21.98635 -21.62722 -20.28252 -19.33481 -17.93431 -17.55716 -17.13740 -16.86173 -16.80777 -16.45635 -16.24437 -15.80532 -15.46571 -15.38831 -15.07745 -14.98403 -14.74764 -14.55596 -14.42287 -14.16326 -14.06530 -13.69702 -13.41489 -13.29182 -13.14977 -13.11647 -13.00706 -12.88774 -12.79830 -12.59891 -12.45739 -12.13980 -12.06819 -11.93243 -11.74809 -11.68338 -11.59174 -11.50802 -11.39712 -11.11338 -10.39655 -10.18903 -9.89570 -9.36232 -8.76837 -8.58705 -8.32435 -6.07583 1.30032 1.42505 1.47666 1.60431 1.98026 2.25587 2.34894 2.87873 3.01096 3.24682 3.34852 3.71308 3.92902 3.99294 4.04160 4.09888 4.13862 4.16766 4.24823 4.33210 4.36373 4.37458 4.40258 4.50487 4.52191 4.54543 4.57522 4.64328 4.68700 4.77363 4.81637 4.82911 4.85832 4.90584 5.01091 5.05865 5.07968 5.09185 5.11222 5.16252 5.21880 5.26346 5.36283 5.42451 5.50433 5.85225 6.20922 6.28766 6.29127 6.61387 6.75120 7.08924 7.60317 8.76096 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006998 B = 0.004276 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4000.426185 B = 6547.117545 C = 9866.303567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.099 3.901 4 H 0.046 0.954 5 C 0.081 3.919 6 N -0.656 5.656 7 C 0.080 3.920 8 C 0.156 3.844 9 H 0.076 0.924 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.131 4.131 13 C 0.103 3.897 14 N -0.607 5.607 15 C 0.514 3.486 16 O -0.483 6.483 17 C -0.123 4.123 18 S -0.135 6.135 19 C -0.549 4.549 20 H 0.075 0.925 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 0.992 3.008 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.263 1.263 27 O -0.392 6.392 28 C 0.031 3.969 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.325 0.675 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.270 0.730 50 H 0.101 0.899 51 H 0.031 0.969 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 4.250 19.438 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.040 3.960 4 H 0.064 0.936 5 C -0.049 4.049 6 N -0.288 5.288 7 C -0.049 4.049 8 C 0.053 3.947 9 H 0.094 0.906 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.020 4.020 14 N -0.344 5.344 15 C 0.300 3.700 16 O -0.355 6.355 17 C -0.275 4.275 18 S 0.092 5.908 19 C -0.697 4.697 20 H 0.093 0.907 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.814 3.186 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.188 1.188 27 O -0.311 6.311 28 C -0.066 4.066 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.143 0.857 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.079 0.921 50 H 0.120 0.880 51 H 0.049 0.951 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.947 2.550 19.260 20.633 hybrid contribution 0.308 1.316 -1.089 1.736 sum 7.254 3.867 18.171 19.944 Atomic orbital electron populations 1.21767 0.94921 1.02439 1.01488 1.21886 0.97149 0.95711 1.02632 1.22110 0.94408 0.93326 0.86119 0.93603 1.21815 0.93463 0.90389 0.99226 1.60625 1.10850 1.14285 1.42995 1.21940 0.87906 0.95510 0.99528 1.21249 0.95579 0.92737 0.85150 0.90624 1.21930 0.93140 0.98487 1.02794 1.21474 1.01879 0.94894 0.96663 1.21910 0.94347 1.02749 0.97953 1.21879 0.95371 0.82478 1.02243 1.47909 1.52548 1.16914 1.17032 1.19834 0.79072 0.86261 0.84880 1.90848 1.47310 1.20977 1.76347 1.23416 1.03427 1.03304 0.97340 1.85356 1.64828 1.28878 1.11741 1.23178 1.37894 1.07806 1.00829 0.90667 1.26032 0.94027 0.96335 1.02390 1.70166 1.31898 1.19375 1.33182 0.85095 0.78773 0.78178 0.76528 1.18802 1.20256 1.18803 1.87766 1.53506 1.58319 1.31556 1.22924 0.89190 0.91689 1.02752 0.91323 0.92023 0.93808 0.91402 0.90599 0.92280 0.95246 0.85703 0.95065 0.92342 0.89146 0.92727 0.90661 0.90222 0.88763 0.92779 0.90212 0.90474 0.89331 0.89305 0.92093 0.88050 0.95059 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.24 71.98 0.67 -2.77 16 2 C -0.14 -3.46 5.64 30.59 0.17 -3.29 16 3 C 0.10 2.92 2.52 30.60 0.08 2.99 16 4 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 5 C 0.08 2.49 5.03 86.30 0.43 2.92 16 6 N -0.66 -20.23 3.93 -513.86 -2.02 -22.25 16 7 C 0.08 2.22 4.32 86.30 0.37 2.59 16 8 C 0.16 3.58 3.07 44.98 0.14 3.71 16 9 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 10 C -0.12 -2.14 5.34 30.67 0.16 -1.97 16 11 C -0.11 -1.50 5.88 30.62 0.18 -1.32 16 12 C -0.13 -2.10 6.08 30.67 0.19 -1.92 16 13 C 0.10 2.15 6.34 86.36 0.55 2.70 16 14 N -0.61 -16.65 2.98 -794.93 -2.37 -19.02 16 15 C 0.51 19.31 7.44 87.66 0.65 19.97 16 16 O -0.48 -20.63 9.41 -3.04 -0.03 -20.66 16 17 C -0.12 -5.15 4.51 71.24 0.32 -4.83 16 18 S -0.14 -7.56 20.57 -56.49 -1.16 -8.72 16 19 C -0.55 -31.95 9.50 67.95 0.65 -31.30 16 20 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 21 C 0.02 0.98 5.49 84.86 0.47 1.45 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 23 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 O -0.39 -10.64 9.37 -148.98 -1.40 -12.04 16 28 C 0.03 0.71 10.45 113.37 1.18 1.90 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.34 6.44 -2.39 -0.02 1.32 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.32 9.30 8.06 -89.70 -0.72 8.58 16 37 H 0.03 0.75 8.09 -2.38 -0.02 0.73 16 38 H 0.06 2.03 6.36 -2.39 -0.02 2.02 16 39 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.76 5.94 -2.39 -0.01 1.75 16 47 H 0.09 3.51 7.74 -2.40 -0.02 3.49 16 48 H 0.09 3.52 7.90 -2.39 -0.02 3.50 16 49 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.03 0.82 8.04 -2.39 -0.02 0.80 16 52 H 0.05 0.99 6.37 -2.39 -0.02 0.98 16 Total: -1.00 -72.08 411.71 1.70 -70.38 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.16 Total: 31.19 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 6.21 Total: -9.18 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.10 Total: -97.17 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.43 Total: -32.70 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal Total: -72.08 1.70 -70.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491242332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.202 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds