Wall clock time and date at job start Wed Apr 1 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46697 * 2 1 4 4 N 1.46501 * 109.47399 * 300.00025 * 3 2 1 5 5 C 1.36931 * 120.00696 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99789 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00401 * 180.02562 * 5 4 3 8 8 N 1.31611 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99809 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46825 * 90.00027 * 9 7 5 11 11 H 1.48499 * 109.46869 * 209.99839 * 9 7 5 12 12 H 1.48490 * 109.47219 * 329.99621 * 9 7 5 13 13 N 1.46495 * 109.47027 * 240.00017 * 2 1 3 14 14 C 1.34779 * 120.00010 * 174.53536 * 13 2 1 15 15 O 1.21288 * 119.99885 * 355.46940 * 14 13 2 16 16 C 1.50696 * 120.00135 * 175.73751 * 14 13 2 17 17 H 1.09000 * 109.33871 * 315.38469 * 16 14 13 18 18 O 1.42727 * 109.33973 * 195.70436 * 16 14 13 19 19 C 1.43219 * 113.11959 * 187.98888 * 18 16 14 20 20 C 1.52971 * 108.47746 * 70.71013 * 19 18 16 21 21 C 1.50740 * 109.76780 * 310.84391 * 20 19 18 22 22 C 1.38601 * 118.76090 * 196.80954 * 21 20 19 23 23 C 1.38071 * 120.27487 * 180.19923 * 22 21 20 24 24 C 1.38257 * 119.86388 * 0.02562 * 23 22 21 25 25 C 1.38057 * 119.89380 * 359.90801 * 24 23 22 26 26 C 1.37900 * 121.35663 * 16.85233 * 21 20 19 27 27 C 1.53000 * 109.47211 * 119.99725 * 2 1 3 28 28 C 1.53000 * 117.49518 * 123.33006 * 27 2 1 29 29 C 1.52992 * 117.49720 * 54.70426 * 27 2 1 30 30 H 1.08995 * 109.46584 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46736 * 299.99919 * 1 2 3 32 32 H 1.08993 * 109.47198 * 59.99935 * 1 2 3 33 33 H 1.08997 * 109.47535 * 59.99974 * 3 2 1 34 34 H 1.09004 * 109.46923 * 180.02562 * 3 2 1 35 35 H 0.97011 * 119.99660 * 0.02562 * 4 3 2 36 36 H 0.96998 * 120.00486 * 179.97438 * 8 7 5 37 37 H 0.97003 * 120.00511 * 354.54578 * 13 2 1 38 38 H 1.08999 * 109.63981 * 190.41043 * 19 18 16 39 39 H 1.09002 * 109.63773 * 311.01765 * 19 18 16 40 40 H 1.08999 * 109.41893 * 70.93381 * 20 19 18 41 41 H 1.09001 * 109.42333 * 190.74868 * 20 19 18 42 42 H 1.08003 * 119.86203 * 0.19518 * 22 21 20 43 43 H 1.08003 * 120.06841 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.05247 * 179.87639 * 24 23 22 45 45 H 1.08002 * 119.84429 * 179.97438 * 25 24 23 46 46 H 1.08998 * 115.55038 * 269.03290 * 27 2 1 47 47 H 1.08996 * 117.49974 * 359.97438 * 28 27 2 48 48 H 1.08997 * 117.49938 * 145.02122 * 28 27 2 49 49 H 1.08999 * 117.50273 * 214.97346 * 29 27 2 50 50 H 1.09001 * 117.50045 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1962 5 6 1.8827 3.4440 -1.4132 6 1 2.5036 3.9690 -0.7023 7 6 1.4195 4.0985 -2.5463 8 7 0.6625 3.4590 -3.4124 9 14 1.8707 5.8870 -2.8419 10 1 3.1331 5.9568 -3.6208 11 1 0.7826 6.5528 -3.6020 12 1 2.0550 6.5730 -1.5379 13 7 2.0184 -0.6906 -1.1961 14 6 3.3385 -0.7184 -1.4666 15 8 4.1141 -0.1031 -0.7659 16 6 3.8502 -1.5089 -2.6431 17 1 3.3626 -2.4836 -2.6625 18 8 5.2603 -1.6882 -2.5147 19 6 5.8612 -2.2710 -3.6768 20 6 5.8418 -1.2361 -4.8032 21 6 4.4609 -0.6447 -4.9285 22 6 4.1304 0.0376 -6.0888 23 6 2.8759 0.5953 -6.2350 24 6 1.9456 0.4731 -5.2195 25 6 2.2736 -0.2075 -4.0640 26 6 3.5321 -0.7701 -3.9169 27 6 2.0401 -0.7212 1.2493 28 6 2.9786 -1.9119 1.0438 29 6 1.5363 -2.1441 1.4986 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 0.9936 1.6618 -1.8345 36 1 0.3385 3.9164 -4.2040 37 1 1.3917 -1.1278 -1.7937 38 1 6.8907 -2.5519 -3.4551 39 1 5.2950 -3.1520 -3.9792 40 1 6.5565 -0.4440 -4.5799 41 1 6.1167 -1.7170 -5.7420 42 1 4.8573 0.1334 -6.8818 43 1 2.6220 1.1266 -7.1404 44 1 0.9640 0.9099 -5.3298 45 1 1.5464 -0.3021 -3.2711 46 1 2.2125 -0.0885 2.1199 47 1 3.2324 -2.1817 0.0187 48 1 3.7687 -2.0628 1.7793 49 1 1.3776 -2.4478 2.5334 50 1 0.8412 -2.5663 0.7729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495271881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:32 Heat of formation + Delta-G solvation = 7.388885 kcal Electronic energy + Delta-G solvation = -32730.887278 eV Core-core repulsion = 28725.098294 eV Total energy + Delta-G solvation = -4005.788984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.86348 -39.54948 -37.52286 -36.75868 -34.89722 -33.52065 -32.85507 -31.91883 -30.83283 -29.46731 -29.24218 -26.23383 -25.80727 -23.75002 -23.68658 -22.29576 -22.07233 -21.31250 -20.75365 -19.88684 -19.03849 -17.27832 -17.26742 -16.79078 -16.39929 -15.71728 -15.49154 -15.25652 -14.95598 -14.35257 -14.21375 -14.14630 -13.81986 -13.53012 -13.39066 -13.27313 -13.08615 -12.82086 -12.47320 -12.30296 -12.08528 -12.05315 -11.87580 -11.66618 -11.53886 -11.23920 -11.05622 -10.93735 -10.79057 -10.74297 -10.68196 -10.51024 -10.16873 -10.00077 -9.78696 -9.61535 -9.58659 -9.26057 -8.69744 -8.53197 -8.38161 -8.24115 -6.72198 -5.66084 -2.89577 1.57884 1.74111 3.02984 3.12602 3.49883 3.55174 3.56643 4.00907 4.08072 4.17311 4.67472 4.72677 4.74596 4.89476 4.91310 4.93875 5.11261 5.15490 5.19017 5.21325 5.28959 5.47224 5.48511 5.51898 5.59787 5.63084 5.70714 5.74656 5.79834 5.87320 5.90181 5.99569 6.03112 6.09078 6.20356 6.26763 6.31451 6.33026 6.36437 6.40439 6.64556 6.66905 6.74826 6.78704 6.93428 6.96753 7.10206 7.26134 7.32454 7.83179 7.90399 8.53717 8.69718 9.65875 10.23702 10.60287 11.56883 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.006461 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.562506 B = 4332.895456 C = 6889.125433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.202 3.798 3 C 0.137 3.863 4 N -0.722 5.722 5 C -0.223 4.223 6 H 0.065 0.935 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.900 3.100 10 H -0.293 1.293 11 H -0.294 1.294 12 H -0.284 1.284 13 N -0.717 5.717 14 C 0.536 3.464 15 O -0.494 6.494 16 C 0.118 3.882 17 H 0.083 0.917 18 O -0.346 6.346 19 C 0.060 3.940 20 C -0.113 4.113 21 C -0.075 4.075 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.086 4.086 25 C -0.089 4.089 26 C -0.119 4.119 27 C -0.145 4.145 28 C -0.163 4.163 29 C -0.183 4.183 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.393 0.607 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -16.773 -1.315 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.116 3.884 3 C 0.009 3.991 4 N -0.366 5.366 5 C -0.355 4.355 6 H 0.083 0.917 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.732 3.268 10 H -0.221 1.221 11 H -0.220 1.220 12 H -0.210 1.210 13 N -0.372 5.372 14 C 0.321 3.679 15 O -0.366 6.366 16 C 0.056 3.944 17 H 0.100 0.900 18 O -0.264 6.264 19 C -0.017 4.017 20 C -0.151 4.151 21 C -0.075 4.075 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.108 4.108 26 C -0.120 4.120 27 C -0.164 4.164 28 C -0.200 4.200 29 C -0.220 4.220 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.214 0.786 36 H 0.060 0.940 37 H 0.228 0.772 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.676 -16.098 -0.574 16.523 hybrid contribution -0.354 0.896 -1.065 1.436 sum 3.322 -15.203 -1.639 15.647 Atomic orbital electron populations 1.21987 0.93112 1.01305 1.04098 1.20089 0.93620 0.92735 0.81959 1.21202 0.99444 0.87540 0.90906 1.42176 1.61038 1.10383 1.23035 1.19186 1.24572 0.87573 1.04171 0.91658 1.24563 1.00958 0.97743 0.97541 1.69615 1.39838 1.35633 1.13049 0.86284 0.77281 0.85689 0.77558 1.22107 1.22033 1.21025 1.46123 1.06694 1.57448 1.26949 1.19515 0.82695 0.81280 0.84446 1.90686 1.55775 1.40966 1.49210 1.20721 0.84241 0.97454 0.91959 0.89965 1.88175 1.18224 1.82839 1.37157 1.22668 0.98883 0.94454 0.85682 1.21098 0.94802 0.99586 0.99576 1.19265 0.94741 0.99561 0.93980 1.20920 0.96875 0.99275 0.97162 1.21123 0.93727 0.98997 0.99310 1.21132 1.00370 0.96146 0.92721 1.21089 0.95365 0.96565 0.97747 1.19664 0.95288 1.02165 0.94846 1.22577 1.04041 0.90287 0.99540 1.22922 0.92526 1.02361 1.02163 1.22951 0.97755 0.99692 1.01590 0.92890 0.90931 0.90780 0.96285 0.92422 0.78560 0.94048 0.77157 0.88071 0.92705 0.89720 0.89983 0.86495 0.86323 0.85075 0.85785 0.87335 0.89078 0.89425 0.89354 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.20 37.16 0.30 -1.83 16 2 C 0.20 3.29 0.55 -131.82 -0.07 3.22 16 3 C 0.14 2.95 4.82 -4.04 -0.02 2.93 16 4 N -0.72 -18.02 5.18 -59.91 -0.31 -18.33 16 5 C -0.22 -6.38 9.99 -15.06 -0.15 -6.53 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 9 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 10 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.72 -11.14 3.26 -47.61 -0.16 -11.29 16 14 C 0.54 9.60 3.64 -10.99 -0.04 9.56 16 15 O -0.49 -10.86 12.83 -13.93 -0.18 -11.04 16 16 C 0.12 1.84 3.14 -29.06 -0.09 1.75 16 17 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 18 O -0.35 -5.60 10.01 -54.71 -0.55 -6.15 16 19 C 0.06 0.70 6.85 37.14 0.25 0.95 16 20 C -0.11 -1.39 6.00 -27.88 -0.17 -1.56 16 21 C -0.08 -1.16 5.78 -104.59 -0.60 -1.77 16 22 C -0.12 -1.85 9.67 -39.51 -0.38 -2.23 16 23 C -0.11 -1.81 10.05 -39.64 -0.40 -2.20 16 24 C -0.09 -1.51 10.05 -39.64 -0.40 -1.91 16 25 C -0.09 -1.55 9.08 -39.50 -0.36 -1.91 16 26 C -0.12 -1.98 5.46 -104.62 -0.57 -2.55 16 27 C -0.14 -2.12 4.88 -90.62 -0.44 -2.56 16 28 C -0.16 -2.28 8.57 -26.73 -0.23 -2.51 16 29 C -0.18 -2.15 9.67 -26.73 -0.26 -2.41 16 30 H 0.05 0.62 6.97 -51.93 -0.36 0.25 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.22 6.86 -51.93 -0.36 0.87 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.42 5.66 -51.93 -0.29 1.13 16 35 H 0.38 9.51 6.35 -40.82 -0.26 9.25 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.39 5.17 6.65 -40.82 -0.27 4.90 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 44 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.12 2.08 4.91 -52.49 -0.26 1.82 16 46 H 0.11 1.61 8.07 -51.93 -0.42 1.19 16 47 H 0.09 1.36 5.11 -51.93 -0.27 1.09 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.98 7.27 -51.93 -0.38 0.60 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -33.66 388.48 -10.83 -44.50 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -7.48 Total: 16.44 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.72 Total: -12.02 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.26 Total: -55.63 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.73 Total: -17.19 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.66 -10.83 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495271881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.885 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds