Wall clock time and date at job start Wed Apr 1 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46697 * 2 1 4 4 N 1.46501 * 109.47399 * 300.00025 * 3 2 1 5 5 C 1.36931 * 120.00696 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99789 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00401 * 180.02562 * 5 4 3 8 8 N 1.31611 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99809 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46825 * 90.00027 * 9 7 5 11 11 H 1.48499 * 109.46869 * 209.99839 * 9 7 5 12 12 H 1.48490 * 109.47219 * 329.99621 * 9 7 5 13 13 N 1.46495 * 109.47027 * 240.00017 * 2 1 3 14 14 C 1.34779 * 120.00010 * 174.53536 * 13 2 1 15 15 O 1.21288 * 119.99885 * 355.46940 * 14 13 2 16 16 C 1.50696 * 120.00135 * 175.73751 * 14 13 2 17 17 H 1.09000 * 109.33871 * 315.38469 * 16 14 13 18 18 O 1.42727 * 109.33973 * 195.70436 * 16 14 13 19 19 C 1.43219 * 113.11959 * 187.98888 * 18 16 14 20 20 C 1.52971 * 108.47746 * 70.71013 * 19 18 16 21 21 C 1.50740 * 109.76780 * 310.84391 * 20 19 18 22 22 C 1.38601 * 118.76090 * 196.80954 * 21 20 19 23 23 C 1.38071 * 120.27487 * 180.19923 * 22 21 20 24 24 C 1.38257 * 119.86388 * 0.02562 * 23 22 21 25 25 C 1.38057 * 119.89380 * 359.90801 * 24 23 22 26 26 C 1.37900 * 121.35663 * 16.85233 * 21 20 19 27 27 C 1.53000 * 109.47211 * 119.99725 * 2 1 3 28 28 C 1.53000 * 117.49518 * 123.33006 * 27 2 1 29 29 C 1.52992 * 117.49720 * 54.70426 * 27 2 1 30 30 H 1.08995 * 109.46584 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46736 * 299.99919 * 1 2 3 32 32 H 1.08993 * 109.47198 * 59.99935 * 1 2 3 33 33 H 1.08997 * 109.47535 * 59.99974 * 3 2 1 34 34 H 1.09004 * 109.46923 * 180.02562 * 3 2 1 35 35 H 0.97011 * 119.99660 * 0.02562 * 4 3 2 36 36 H 0.96998 * 120.00486 * 179.97438 * 8 7 5 37 37 H 0.97003 * 120.00511 * 354.54578 * 13 2 1 38 38 H 1.08999 * 109.63981 * 190.41043 * 19 18 16 39 39 H 1.09002 * 109.63773 * 311.01765 * 19 18 16 40 40 H 1.08999 * 109.41893 * 70.93381 * 20 19 18 41 41 H 1.09001 * 109.42333 * 190.74868 * 20 19 18 42 42 H 1.08003 * 119.86203 * 0.19518 * 22 21 20 43 43 H 1.08003 * 120.06841 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.05247 * 179.87639 * 24 23 22 45 45 H 1.08002 * 119.84429 * 179.97438 * 25 24 23 46 46 H 1.08998 * 115.55038 * 269.03290 * 27 2 1 47 47 H 1.08996 * 117.49974 * 359.97438 * 28 27 2 48 48 H 1.08997 * 117.49938 * 145.02122 * 28 27 2 49 49 H 1.08999 * 117.50273 * 214.97346 * 29 27 2 50 50 H 1.09001 * 117.50045 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1962 5 6 1.8827 3.4440 -1.4132 6 1 2.5036 3.9690 -0.7023 7 6 1.4195 4.0985 -2.5463 8 7 0.6625 3.4590 -3.4124 9 14 1.8707 5.8870 -2.8419 10 1 3.1331 5.9568 -3.6208 11 1 0.7826 6.5528 -3.6020 12 1 2.0550 6.5730 -1.5379 13 7 2.0184 -0.6906 -1.1961 14 6 3.3385 -0.7184 -1.4666 15 8 4.1141 -0.1031 -0.7659 16 6 3.8502 -1.5089 -2.6431 17 1 3.3626 -2.4836 -2.6625 18 8 5.2603 -1.6882 -2.5147 19 6 5.8612 -2.2710 -3.6768 20 6 5.8418 -1.2361 -4.8032 21 6 4.4609 -0.6447 -4.9285 22 6 4.1304 0.0376 -6.0888 23 6 2.8759 0.5953 -6.2350 24 6 1.9456 0.4731 -5.2195 25 6 2.2736 -0.2075 -4.0640 26 6 3.5321 -0.7701 -3.9169 27 6 2.0401 -0.7212 1.2493 28 6 2.9786 -1.9119 1.0438 29 6 1.5363 -2.1441 1.4986 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 0.9936 1.6618 -1.8345 36 1 0.3385 3.9164 -4.2040 37 1 1.3917 -1.1278 -1.7937 38 1 6.8907 -2.5519 -3.4551 39 1 5.2950 -3.1520 -3.9792 40 1 6.5565 -0.4440 -4.5799 41 1 6.1167 -1.7170 -5.7420 42 1 4.8573 0.1334 -6.8818 43 1 2.6220 1.1266 -7.1404 44 1 0.9640 0.9099 -5.3298 45 1 1.5464 -0.3021 -3.2711 46 1 2.2125 -0.0885 2.1199 47 1 3.2324 -2.1817 0.0187 48 1 3.7687 -2.0628 1.7793 49 1 1.3776 -2.4478 2.5334 50 1 0.8412 -2.5663 0.7729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495271881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:31 Heat of formation + Delta-G solvation = -12.700662 kcal Electronic energy + Delta-G solvation = -32731.758426 eV Core-core repulsion = 28725.098294 eV Total energy + Delta-G solvation = -4006.660133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13431 -40.77088 -38.75090 -38.02150 -36.54424 -35.05351 -34.13256 -33.35343 -32.42199 -31.03730 -30.38749 -27.66352 -27.23298 -25.49903 -24.80083 -23.58036 -23.11153 -22.87424 -22.02744 -21.02312 -20.39587 -19.24435 -18.52678 -18.01750 -17.65417 -16.92675 -16.87488 -16.63074 -16.25697 -16.03692 -15.54638 -15.40489 -15.24557 -14.96078 -14.73681 -14.62894 -14.52419 -14.34457 -13.70599 -13.52601 -13.45273 -13.36780 -13.29320 -12.97822 -12.85474 -12.79436 -12.68110 -12.39231 -12.27504 -12.12098 -12.06453 -11.93892 -11.74088 -11.56773 -11.21196 -11.07111 -10.90564 -10.70863 -10.46479 -9.93458 -9.64403 -9.48811 -8.81546 -7.87556 -5.10754 0.33052 0.49777 1.42036 1.43992 1.50892 1.69217 1.89438 2.56645 2.83239 2.93321 3.06471 3.44132 3.54724 3.63238 3.67323 3.79616 3.89719 3.99770 4.02014 4.07768 4.16080 4.21725 4.29850 4.31975 4.38906 4.40805 4.57171 4.59466 4.61937 4.71404 4.82412 4.84994 4.88113 4.94115 4.96857 4.98300 5.07266 5.09939 5.18581 5.23085 5.31819 5.35292 5.37039 5.52171 5.53387 5.56878 5.68272 5.71697 6.00931 6.09673 6.34204 6.62098 7.36397 7.42838 8.16494 8.47958 9.33527 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.006461 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.562506 B = 4332.895456 C = 6889.125433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.210 3.790 3 C 0.138 3.862 4 N -0.721 5.721 5 C -0.243 4.243 6 H 0.052 0.948 7 C -0.056 4.056 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.298 1.298 11 H -0.288 1.288 12 H -0.280 1.280 13 N -0.705 5.705 14 C 0.533 3.467 15 O -0.543 6.543 16 C 0.123 3.877 17 H 0.117 0.883 18 O -0.376 6.376 19 C 0.053 3.947 20 C -0.112 4.112 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.166 4.166 28 C -0.173 4.173 29 C -0.144 4.144 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.379 0.621 36 H 0.248 0.752 37 H 0.406 0.594 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -18.883 -1.901 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 C 0.010 3.990 4 N -0.365 5.365 5 C -0.375 4.375 6 H 0.070 0.930 7 C -0.250 4.250 8 N -0.592 5.592 9 Si 0.785 3.215 10 H -0.226 1.226 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.360 5.360 14 C 0.319 3.681 15 O -0.419 6.419 16 C 0.061 3.939 17 H 0.134 0.866 18 O -0.294 6.294 19 C -0.022 4.022 20 C -0.149 4.149 21 C -0.085 4.085 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.134 4.134 27 C -0.186 4.186 28 C -0.210 4.210 29 C -0.181 4.181 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.213 0.787 36 H 0.057 0.943 37 H 0.244 0.756 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.119 0.881 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.128 0.872 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.793 -18.238 -1.163 18.665 hybrid contribution -0.336 1.573 -0.895 1.841 sum 3.457 -16.665 -2.057 17.144 Atomic orbital electron populations 1.21929 0.91346 1.03407 1.03011 1.19904 0.94716 0.89722 0.83271 1.21201 0.97517 0.90995 0.89238 1.42167 1.60853 1.09500 1.23985 1.19366 1.24678 0.89223 1.04273 0.92998 1.25168 1.01344 1.00924 0.97518 1.69721 1.40023 1.36455 1.12966 0.85444 0.76674 0.82082 0.77347 1.22616 1.21449 1.20544 1.46035 1.06474 1.56649 1.26836 1.20046 0.82823 0.80696 0.84553 1.90664 1.57026 1.43153 1.51099 1.20720 0.84711 0.98355 0.90073 0.86556 1.88147 1.18327 1.83506 1.39431 1.23008 1.00313 0.94743 0.84174 1.21194 0.92385 0.99627 1.01673 1.19764 0.96006 0.99098 0.93638 1.21302 0.96913 0.98239 0.97861 1.21395 0.94012 0.99113 0.99490 1.21162 1.00464 0.97409 0.93917 1.21146 0.96088 0.97329 0.97725 1.19872 0.95241 1.02589 0.95715 1.22454 1.06224 0.91518 0.98372 1.22904 0.94023 1.02287 1.01813 1.23059 0.95925 0.95899 1.03225 0.89118 0.90706 0.93138 0.96900 0.95677 0.78708 0.94252 0.75641 0.85680 0.90340 0.90681 0.86381 0.83383 0.84632 0.86602 0.86123 0.88110 0.89970 0.89606 0.87192 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.20 71.98 0.59 -3.30 16 2 C 0.21 6.87 0.55 3.61 0.00 6.87 16 3 C 0.14 6.21 4.82 86.38 0.42 6.63 16 4 N -0.72 -37.36 5.18 -343.45 -1.78 -39.14 16 5 C -0.24 -14.32 9.99 84.03 0.84 -13.48 16 6 H 0.05 3.13 7.83 -2.91 -0.02 3.11 16 7 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 8 N -0.94 -54.95 13.06 21.65 0.28 -54.67 16 9 Si 0.95 48.09 29.55 68.60 2.03 50.12 16 10 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 13 N -0.70 -21.87 3.26 -422.91 -1.38 -23.25 16 14 C 0.53 19.30 3.64 87.66 0.32 19.62 16 15 O -0.54 -24.81 12.83 15.57 0.20 -24.61 16 16 C 0.12 3.74 3.14 29.09 0.09 3.83 16 17 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 18 O -0.38 -11.76 10.01 -130.35 -1.31 -13.07 16 19 C 0.05 1.10 6.85 71.97 0.49 1.59 16 20 C -0.11 -2.45 6.00 29.85 0.18 -2.27 16 21 C -0.08 -2.50 5.78 -19.85 -0.11 -2.62 16 22 C -0.13 -3.53 9.67 22.32 0.22 -3.31 16 23 C -0.12 -3.84 10.05 22.23 0.22 -3.62 16 24 C -0.11 -4.03 10.05 22.23 0.22 -3.81 16 25 C -0.10 -3.70 9.08 22.32 0.20 -3.50 16 26 C -0.13 -4.38 5.46 -19.86 -0.11 -4.48 16 27 C -0.17 -4.75 4.88 -10.80 -0.05 -4.80 16 28 C -0.17 -4.68 8.57 30.60 0.26 -4.42 16 29 C -0.14 -2.95 9.67 30.59 0.30 -2.66 16 30 H 0.09 1.84 6.97 -2.39 -0.02 1.82 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.66 6.86 -2.39 -0.02 1.64 16 33 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.03 1.32 5.66 -2.39 -0.01 1.31 16 35 H 0.38 19.62 6.35 -92.70 -0.59 19.03 16 36 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.41 10.44 6.65 -92.71 -0.62 9.82 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 45 H 0.12 4.17 4.91 -2.91 -0.01 4.15 16 46 H 0.10 3.01 8.07 -2.39 -0.02 2.99 16 47 H 0.08 2.38 5.11 -2.39 -0.01 2.37 16 48 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.11 1.86 7.27 -2.39 -0.02 1.85 16 Total: -1.00 -75.91 388.48 2.36 -73.55 By element: Atomic # 1 Polarization: 47.80 SS G_CDS: -0.23 Total: 47.57 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 4.55 Total: -16.49 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -2.88 Total: -117.07 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.11 Total: -37.68 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -75.91 2.36 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495271881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.849 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds