Wall clock time and date at job start Wed Apr 1 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47107 * 2 1 4 4 N 1.46499 * 109.47193 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99943 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00383 * 359.97438 * 5 4 3 7 7 C 1.38814 * 119.99921 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47268 * 60.00085 * 9 7 5 11 11 H 1.48501 * 109.47300 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47323 * 300.00019 * 9 7 5 13 13 N 1.46496 * 109.46989 * 120.00201 * 2 1 3 14 14 C 1.34783 * 119.99871 * 298.48425 * 13 2 1 15 15 O 1.21273 * 119.99863 * 4.97781 * 14 13 2 16 16 C 1.50700 * 119.99575 * 184.98199 * 14 13 2 17 17 H 1.09001 * 109.21454 * 43.60384 * 16 14 13 18 18 O 1.42731 * 109.33783 * 163.20239 * 16 14 13 19 19 C 1.43217 * 113.11729 * 172.04137 * 18 16 14 20 20 C 1.52969 * 108.48635 * 289.29968 * 19 18 16 21 21 C 1.50747 * 109.76949 * 49.13912 * 20 19 18 22 22 C 1.38606 * 118.76134 * 163.40088 * 21 20 19 23 23 C 1.38061 * 120.27542 * 179.89261 * 22 21 20 24 24 C 1.38260 * 119.86666 * 359.68285 * 23 22 21 25 25 C 1.38057 * 119.89437 * 0.25477 * 24 23 22 26 26 C 1.37903 * 121.35640 * 343.12982 * 21 20 19 27 27 C 1.53005 * 109.46984 * 240.00370 * 2 1 3 28 28 C 1.52999 * 117.49831 * 12.93049 * 27 2 1 29 29 C 1.52996 * 60.00229 * 252.51356 * 28 27 2 30 30 H 1.09001 * 109.46952 * 300.00180 * 1 2 3 31 31 H 1.09001 * 109.46623 * 59.99762 * 1 2 3 32 32 H 1.09002 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47483 * 300.00328 * 3 2 1 34 34 H 1.09004 * 109.46923 * 59.99794 * 3 2 1 35 35 H 0.96997 * 119.99744 * 0.02562 * 4 3 2 36 36 H 0.96998 * 120.00068 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99910 * 118.47911 * 13 2 1 38 38 H 1.09004 * 109.63284 * 48.99921 * 19 18 16 39 39 H 1.08993 * 109.63487 * 169.39780 * 19 18 16 40 40 H 1.09002 * 109.41829 * 289.05722 * 20 19 18 41 41 H 1.08994 * 109.42481 * 169.23948 * 20 19 18 42 42 H 1.08004 * 119.85913 * 359.54451 * 22 21 20 43 43 H 1.08008 * 120.07036 * 179.85972 * 23 22 21 44 44 H 1.08001 * 120.05597 * 180.27470 * 24 23 22 45 45 H 1.07996 * 119.85350 * 179.97438 * 25 24 23 46 46 H 1.08997 * 115.54585 * 158.64625 * 27 2 1 47 47 H 1.08996 * 117.50374 * 0.02562 * 28 27 2 48 48 H 1.09000 * 117.49190 * 145.02346 * 28 27 2 49 49 H 1.09007 * 117.50208 * 252.51559 * 29 28 27 50 50 H 1.09007 * 117.51943 * 107.48280 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0009 7 6 5.5778 2.6284 0.0013 8 7 6.2360 1.4885 0.0012 9 14 6.5119 4.2461 0.0015 10 1 6.1531 5.0247 1.2140 11 1 7.9719 3.9747 0.0021 12 1 6.1532 5.0249 -1.2110 13 7 2.0184 -0.6906 1.1961 14 6 1.7181 -0.2126 2.4200 15 8 0.9703 0.7352 2.5341 16 6 2.3119 -0.8560 3.6467 17 1 3.3688 -1.0562 3.4708 18 8 2.1772 0.0302 4.7574 19 6 2.5501 -0.5693 6.0034 20 6 1.4897 -1.6055 6.3797 21 6 1.2167 -2.5063 5.2022 22 6 0.5633 -3.7092 5.4201 23 6 0.2954 -4.5570 4.3640 24 6 0.6745 -4.2019 3.0827 25 6 1.3242 -3.0034 2.8646 26 6 1.5979 -2.1531 3.9249 27 6 2.0401 -0.7212 -1.2493 28 6 1.0284 -1.0116 -2.3598 29 6 1.5542 -2.1525 -1.4865 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6024 0.0006 36 1 7.2060 1.4885 0.0017 37 1 2.5577 -1.4919 1.1073 38 1 3.5190 -1.0578 5.8994 39 1 2.6076 0.1974 6.7760 40 1 0.5701 -1.0954 6.6665 41 1 1.8481 -2.2031 7.2178 42 1 0.2676 -3.9869 6.4211 43 1 -0.2119 -5.4946 4.5379 44 1 0.4625 -4.8608 2.2536 45 1 1.6204 -2.7268 1.8636 46 1 3.0603 -0.4800 -1.5478 47 1 -0.0003 -0.6885 -2.2006 48 1 1.3831 -0.9613 -3.3893 49 1 2.2548 -2.8529 -1.9415 50 1 0.8716 -2.5805 -0.7523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495271882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:37 Heat of formation + Delta-G solvation = -2.167806 kcal Electronic energy + Delta-G solvation = -31833.707681 eV Core-core repulsion = 27827.504287 eV Total energy + Delta-G solvation = -4006.203394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.91054 -39.60834 -37.92727 -37.22269 -34.61281 -33.66296 -33.11894 -32.13565 -30.86488 -29.75818 -29.43977 -26.36544 -25.74136 -23.99797 -23.65272 -22.54580 -22.34815 -22.04064 -20.61370 -19.94730 -18.85404 -17.49855 -17.17441 -17.12244 -16.39486 -15.99380 -15.60668 -15.24333 -15.06478 -14.70063 -14.53930 -14.31602 -13.88812 -13.80010 -13.64918 -13.51911 -13.15788 -12.81993 -12.71196 -12.49619 -12.30688 -12.07854 -11.99769 -11.91729 -11.84189 -11.35412 -11.26551 -11.03709 -10.79926 -10.75974 -10.74926 -10.69590 -10.17555 -10.08115 -9.81539 -9.71436 -9.61472 -9.42502 -8.91543 -8.78762 -8.62985 -8.54884 -6.79726 -5.69338 -2.95152 1.10965 1.19003 2.84662 3.15218 3.50069 3.53517 3.55642 3.58795 3.93255 4.18527 4.47547 4.48009 4.65705 4.66882 4.77998 4.84642 4.90043 4.94344 5.08242 5.09645 5.19975 5.23041 5.29109 5.35180 5.40588 5.45722 5.50356 5.62402 5.66531 5.71388 5.73020 5.78638 5.81411 5.90010 5.98518 6.07647 6.23046 6.24013 6.26769 6.30430 6.32131 6.37522 6.49060 6.58302 6.72826 6.78966 6.90898 7.04665 7.14860 7.79116 7.88447 8.50417 8.61926 9.61921 10.19587 10.55864 11.53907 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010252 B = 0.004116 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.572365 B = 6800.900772 C = 8570.093373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.204 3.796 3 C 0.142 3.858 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.709 5.709 14 C 0.539 3.461 15 O -0.508 6.508 16 C 0.114 3.886 17 H 0.096 0.904 18 O -0.341 6.341 19 C 0.056 3.944 20 C -0.116 4.116 21 C -0.066 4.066 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.106 4.106 27 C -0.150 4.150 28 C -0.171 4.171 29 C -0.185 4.185 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.395 0.605 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 -15.686 7.670 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.119 3.881 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.382 6.382 16 C 0.052 3.948 17 H 0.114 0.886 18 O -0.258 6.258 19 C -0.021 4.021 20 C -0.153 4.153 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.107 4.107 27 C -0.168 4.168 28 C -0.208 4.208 29 C -0.222 4.222 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.231 0.769 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.495 -14.578 7.741 20.702 hybrid contribution 1.248 -0.138 -0.035 1.256 sum -11.247 -14.716 7.706 20.061 Atomic orbital electron populations 1.22306 0.94720 1.01614 1.03566 1.20044 0.93071 0.93180 0.81793 1.21067 0.86503 0.91624 0.99374 1.42221 0.99141 1.06169 1.89439 1.19202 0.89018 0.86220 1.41605 0.91404 1.24656 0.96259 0.96665 1.03485 1.69636 1.06638 1.23822 1.58641 0.86287 0.78864 0.83364 0.77841 1.21368 1.21821 1.21407 1.46022 1.55252 1.30205 1.04779 1.19564 0.81190 0.83530 0.83402 1.90639 1.34806 1.26747 1.85994 1.20775 0.99269 0.86933 0.87824 0.88635 1.88239 1.87948 1.35607 1.14046 1.22703 0.96292 0.96488 0.86584 1.21167 1.01251 0.97000 0.95912 1.19481 0.98045 0.95244 0.93822 1.21036 0.99477 0.93947 0.99273 1.21123 0.99907 0.99507 0.92907 1.21070 0.98901 0.96585 0.97152 1.21265 0.98662 0.94252 0.98748 1.19895 1.00872 0.96086 0.93844 1.22579 1.00815 0.96930 0.96523 1.23039 0.99340 1.02592 0.95854 1.22959 1.04036 0.91576 1.03631 0.90219 0.91607 0.92967 0.95708 0.93642 0.78438 0.93723 0.76887 0.92346 0.87729 0.89442 0.89598 0.85920 0.85959 0.85755 0.85318 0.85888 0.88232 0.88869 0.88890 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 7.07 37.16 0.26 -2.19 16 2 C 0.20 3.41 0.54 -131.82 -0.07 3.34 16 3 C 0.14 3.10 4.94 -4.04 -0.02 3.08 16 4 N -0.73 -18.52 5.04 -59.91 -0.30 -18.82 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.23 13.06 55.49 0.72 -27.51 16 9 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.71 -11.34 3.81 -47.61 -0.18 -11.52 16 14 C 0.54 9.83 6.03 -10.98 -0.07 9.76 16 15 O -0.51 -11.06 12.81 -13.86 -0.18 -11.23 16 16 C 0.11 1.81 3.13 -29.06 -0.09 1.72 16 17 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 18 O -0.34 -5.81 10.02 -54.65 -0.55 -6.35 16 19 C 0.06 0.67 6.85 37.14 0.25 0.92 16 20 C -0.12 -1.18 6.00 -27.88 -0.17 -1.35 16 21 C -0.07 -0.78 5.78 -104.59 -0.60 -1.39 16 22 C -0.12 -1.19 9.67 -39.51 -0.38 -1.57 16 23 C -0.12 -1.09 10.05 -39.64 -0.40 -1.49 16 24 C -0.12 -1.20 10.05 -39.64 -0.40 -1.59 16 25 C -0.11 -1.32 9.08 -39.50 -0.36 -1.68 16 26 C -0.11 -1.43 5.46 -104.62 -0.57 -2.00 16 27 C -0.15 -2.25 4.85 -90.62 -0.44 -2.69 16 28 C -0.17 -2.11 9.64 -26.73 -0.26 -2.37 16 29 C -0.18 -2.13 9.76 -26.73 -0.26 -2.39 16 30 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 31 H 0.07 0.90 6.77 -51.93 -0.35 0.55 16 32 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 1.12 6.23 -51.93 -0.32 0.79 16 35 H 0.38 9.91 6.62 -40.82 -0.27 9.64 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.40 5.49 6.66 -40.82 -0.27 5.22 16 38 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.44 4.98 -52.49 -0.26 1.17 16 46 H 0.12 2.22 7.08 -51.93 -0.37 1.85 16 47 H 0.10 1.15 5.88 -51.93 -0.31 0.85 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 50 H 0.09 0.96 7.33 -51.92 -0.38 0.58 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -34.54 390.05 -10.85 -45.39 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.41 Total: 15.32 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.82 Total: -9.18 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.24 Total: -57.85 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.73 Total: -17.59 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.54 -10.85 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495271882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds