Wall clock time and date at job start Wed Apr 1 2020 04:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47107 * 2 1 4 4 N 1.46499 * 109.47193 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99943 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00383 * 359.97438 * 5 4 3 7 7 C 1.38814 * 119.99921 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47268 * 60.00085 * 9 7 5 11 11 H 1.48501 * 109.47300 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47323 * 300.00019 * 9 7 5 13 13 N 1.46496 * 109.46989 * 120.00201 * 2 1 3 14 14 C 1.34783 * 119.99871 * 298.48425 * 13 2 1 15 15 O 1.21273 * 119.99863 * 4.97781 * 14 13 2 16 16 C 1.50700 * 119.99575 * 184.98199 * 14 13 2 17 17 H 1.09001 * 109.21454 * 43.60384 * 16 14 13 18 18 O 1.42731 * 109.33783 * 163.20239 * 16 14 13 19 19 C 1.43217 * 113.11729 * 172.04137 * 18 16 14 20 20 C 1.52969 * 108.48635 * 289.29968 * 19 18 16 21 21 C 1.50747 * 109.76949 * 49.13912 * 20 19 18 22 22 C 1.38606 * 118.76134 * 163.40088 * 21 20 19 23 23 C 1.38061 * 120.27542 * 179.89261 * 22 21 20 24 24 C 1.38260 * 119.86666 * 359.68285 * 23 22 21 25 25 C 1.38057 * 119.89437 * 0.25477 * 24 23 22 26 26 C 1.37903 * 121.35640 * 343.12982 * 21 20 19 27 27 C 1.53005 * 109.46984 * 240.00370 * 2 1 3 28 28 C 1.52999 * 117.49831 * 12.93049 * 27 2 1 29 29 C 1.52996 * 60.00229 * 252.51356 * 28 27 2 30 30 H 1.09001 * 109.46952 * 300.00180 * 1 2 3 31 31 H 1.09001 * 109.46623 * 59.99762 * 1 2 3 32 32 H 1.09002 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47483 * 300.00328 * 3 2 1 34 34 H 1.09004 * 109.46923 * 59.99794 * 3 2 1 35 35 H 0.96997 * 119.99744 * 0.02562 * 4 3 2 36 36 H 0.96998 * 120.00068 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99910 * 118.47911 * 13 2 1 38 38 H 1.09004 * 109.63284 * 48.99921 * 19 18 16 39 39 H 1.08993 * 109.63487 * 169.39780 * 19 18 16 40 40 H 1.09002 * 109.41829 * 289.05722 * 20 19 18 41 41 H 1.08994 * 109.42481 * 169.23948 * 20 19 18 42 42 H 1.08004 * 119.85913 * 359.54451 * 22 21 20 43 43 H 1.08008 * 120.07036 * 179.85972 * 23 22 21 44 44 H 1.08001 * 120.05597 * 180.27470 * 24 23 22 45 45 H 1.07996 * 119.85350 * 179.97438 * 25 24 23 46 46 H 1.08997 * 115.54585 * 158.64625 * 27 2 1 47 47 H 1.08996 * 117.50374 * 0.02562 * 28 27 2 48 48 H 1.09000 * 117.49190 * 145.02346 * 28 27 2 49 49 H 1.09007 * 117.50208 * 252.51559 * 29 28 27 50 50 H 1.09007 * 117.51943 * 107.48280 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0009 7 6 5.5778 2.6284 0.0013 8 7 6.2360 1.4885 0.0012 9 14 6.5119 4.2461 0.0015 10 1 6.1531 5.0247 1.2140 11 1 7.9719 3.9747 0.0021 12 1 6.1532 5.0249 -1.2110 13 7 2.0184 -0.6906 1.1961 14 6 1.7181 -0.2126 2.4200 15 8 0.9703 0.7352 2.5341 16 6 2.3119 -0.8560 3.6467 17 1 3.3688 -1.0562 3.4708 18 8 2.1772 0.0302 4.7574 19 6 2.5501 -0.5693 6.0034 20 6 1.4897 -1.6055 6.3797 21 6 1.2167 -2.5063 5.2022 22 6 0.5633 -3.7092 5.4201 23 6 0.2954 -4.5570 4.3640 24 6 0.6745 -4.2019 3.0827 25 6 1.3242 -3.0034 2.8646 26 6 1.5979 -2.1531 3.9249 27 6 2.0401 -0.7212 -1.2493 28 6 1.0284 -1.0116 -2.3598 29 6 1.5542 -2.1525 -1.4865 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6024 0.0006 36 1 7.2060 1.4885 0.0017 37 1 2.5577 -1.4919 1.1073 38 1 3.5190 -1.0578 5.8994 39 1 2.6076 0.1974 6.7760 40 1 0.5701 -1.0954 6.6665 41 1 1.8481 -2.2031 7.2178 42 1 0.2676 -3.9869 6.4211 43 1 -0.2119 -5.4946 4.5379 44 1 0.4625 -4.8608 2.2536 45 1 1.6204 -2.7268 1.8636 46 1 3.0603 -0.4800 -1.5478 47 1 -0.0003 -0.6885 -2.2006 48 1 1.3831 -0.9613 -3.3893 49 1 2.2548 -2.8529 -1.9415 50 1 0.8716 -2.5805 -0.7523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495271882.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:35 Heat of formation + Delta-G solvation = -23.351864 kcal Electronic energy + Delta-G solvation = -31834.626291 eV Core-core repulsion = 27827.504287 eV Total energy + Delta-G solvation = -4007.122003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.05574 -40.76932 -39.05848 -38.35637 -36.37470 -35.15187 -34.19214 -33.34907 -32.52531 -31.08114 -30.44967 -27.64643 -27.32698 -25.15144 -24.87232 -24.15209 -23.40741 -23.12730 -21.70069 -20.98156 -20.24243 -19.24954 -18.69183 -18.20068 -17.53711 -17.00770 -16.82945 -16.56986 -16.31144 -16.11403 -15.76582 -15.65847 -15.23018 -15.08336 -14.81767 -14.74845 -14.49044 -14.20599 -13.86956 -13.72619 -13.54675 -13.49503 -13.22110 -13.09722 -12.88688 -12.78294 -12.72301 -12.47684 -12.27803 -12.13378 -12.03042 -11.97533 -11.75732 -11.64565 -11.25181 -11.07582 -10.93430 -10.76285 -10.64573 -10.01034 -9.72874 -9.56863 -8.95640 -7.95783 -5.22008 0.27387 0.40747 1.43243 1.46596 1.50025 1.52467 1.91401 2.54534 2.76001 2.87641 3.08350 3.36254 3.45575 3.55057 3.64922 3.76085 3.83925 3.90651 3.94070 4.02970 4.11438 4.18939 4.23629 4.24927 4.27471 4.45403 4.53620 4.54451 4.61204 4.69333 4.77549 4.79396 4.85277 4.87289 4.90437 4.97350 5.02028 5.03510 5.10948 5.12986 5.27541 5.33940 5.44272 5.45813 5.47580 5.55903 5.56322 5.61790 5.95936 6.03782 6.26636 6.56339 7.24402 7.34146 8.07824 8.37271 9.26959 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010252 B = 0.004116 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.572365 B = 6800.900772 C = 8570.093373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.213 3.787 3 C 0.144 3.856 4 N -0.728 5.728 5 C -0.247 4.247 6 H 0.062 0.938 7 C -0.066 4.066 8 N -0.962 5.962 9 Si 0.968 3.032 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.697 5.697 14 C 0.531 3.469 15 O -0.553 6.553 16 C 0.117 3.883 17 H 0.088 0.912 18 O -0.381 6.381 19 C 0.046 3.954 20 C -0.110 4.110 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.178 4.178 28 C -0.161 4.161 29 C -0.155 4.155 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.022 0.978 34 H 0.014 0.986 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 -18.424 7.864 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 C 0.016 3.984 4 N -0.371 5.371 5 C -0.379 4.379 6 H 0.080 0.920 7 C -0.259 4.259 8 N -0.613 5.613 9 Si 0.797 3.203 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.351 5.351 14 C 0.317 3.683 15 O -0.430 6.430 16 C 0.055 3.945 17 H 0.106 0.894 18 O -0.300 6.300 19 C -0.030 4.030 20 C -0.147 4.147 21 C -0.083 4.083 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.197 4.197 28 C -0.198 4.198 29 C -0.191 4.191 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.211 0.789 36 H 0.060 0.940 37 H 0.243 0.757 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.703 -17.343 7.924 23.481 hybrid contribution 1.601 0.706 -0.071 1.751 sum -12.102 -16.637 7.853 22.022 Atomic orbital electron populations 1.22211 0.92934 1.03116 1.02887 1.19865 0.94171 0.90272 0.82936 1.21085 0.84456 0.95378 0.97445 1.42264 1.00606 1.05086 1.89146 1.19508 0.89760 0.87139 1.41494 0.92045 1.25405 0.96948 0.99945 1.03619 1.69773 1.06592 1.25538 1.59401 0.85298 0.77433 0.79627 0.77923 1.21251 1.21459 1.20407 1.45984 1.54723 1.30167 1.04207 1.20146 0.80583 0.82950 0.84599 1.90607 1.36947 1.28680 1.86766 1.20670 0.98990 0.88039 0.86760 0.89418 1.88166 1.88460 1.37533 1.15838 1.23019 0.97338 0.97618 0.85016 1.21167 1.00533 0.96575 0.96427 1.19771 0.98484 0.96446 0.93573 1.21377 0.98476 0.92963 1.00968 1.21563 0.98769 1.00356 0.92321 1.21405 0.97912 0.95952 0.98563 1.21363 0.99439 0.95073 0.98343 1.19801 1.02722 0.95217 0.95416 1.22242 0.99911 1.00500 0.97009 1.23171 0.98993 1.02188 0.95461 1.23067 1.03357 0.89851 1.02856 0.92884 0.90281 0.90230 0.96050 0.96838 0.78901 0.93964 0.75662 0.91807 0.86287 0.89584 0.86389 0.83188 0.82808 0.83193 0.85390 0.89395 0.86991 0.88179 0.87481 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 7.07 71.99 0.51 -4.03 16 2 C 0.21 7.27 0.54 3.61 0.00 7.28 16 3 C 0.14 6.61 4.94 86.38 0.43 7.04 16 4 N -0.73 -39.00 5.04 -343.46 -1.73 -40.73 16 5 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 6 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 8 N -0.96 -59.25 13.06 21.65 0.28 -58.96 16 9 Si 0.97 48.23 29.55 68.60 2.03 50.26 16 10 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.70 -23.15 3.81 -422.92 -1.61 -24.76 16 14 C 0.53 20.51 6.03 87.66 0.53 21.04 16 15 O -0.55 -25.74 12.81 15.56 0.20 -25.54 16 16 C 0.12 3.94 3.13 29.09 0.09 4.03 16 17 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 18 O -0.38 -13.77 10.02 -130.41 -1.31 -15.08 16 19 C 0.05 1.11 6.85 71.97 0.49 1.60 16 20 C -0.11 -2.11 6.00 29.85 0.18 -1.93 16 21 C -0.08 -1.86 5.78 -19.84 -0.11 -1.98 16 22 C -0.12 -2.03 9.67 22.32 0.22 -1.81 16 23 C -0.11 -1.69 10.05 22.23 0.22 -1.47 16 24 C -0.12 -2.07 10.05 22.23 0.22 -1.84 16 25 C -0.12 -2.81 9.08 22.32 0.20 -2.61 16 26 C -0.13 -3.52 5.46 -19.86 -0.11 -3.63 16 27 C -0.18 -5.28 4.85 -10.79 -0.05 -5.33 16 28 C -0.16 -3.62 9.64 30.59 0.29 -3.33 16 29 C -0.15 -3.15 9.76 30.59 0.30 -2.85 16 30 H 0.05 1.89 6.11 -2.39 -0.01 1.88 16 31 H 0.08 2.10 6.77 -2.39 -0.02 2.08 16 32 H 0.08 1.90 6.98 -2.39 -0.02 1.89 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.01 0.72 6.23 -2.38 -0.01 0.70 16 35 H 0.38 20.59 6.62 -92.71 -0.61 19.98 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.41 11.58 6.66 -92.71 -0.62 10.96 16 38 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.13 2.76 4.98 -2.91 -0.01 2.74 16 46 H 0.09 3.29 7.08 -2.39 -0.02 3.27 16 47 H 0.11 2.26 5.88 -2.39 -0.01 2.24 16 48 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.11 1.88 7.33 -2.38 -0.02 1.86 16 Total: -1.00 -78.97 390.05 2.33 -76.64 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -0.25 Total: 45.41 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.72 Total: -7.24 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -3.06 Total: -124.45 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.11 Total: -40.62 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.97 2.33 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495271882.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.290 kcal (2) G-P(sol) polarization free energy of solvation -78.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds