Wall clock time and date at job start Wed Apr 1 2020 03:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 H 1.09002 * 109.47106 * 54.99897 * 3 2 1 5 5 C 1.52996 * 109.47285 * 175.00395 * 3 2 1 6 6 N 1.46899 * 109.46789 * 296.00182 * 5 3 2 7 7 C 1.47634 * 110.99950 * 292.57360 * 6 5 3 8 8 C 1.50817 * 108.05142 * 150.35018 * 7 6 5 9 9 C 1.53822 * 111.62485 * 95.05918 * 8 7 6 10 10 C 1.54176 * 111.96757 * 319.04027 * 9 8 7 11 11 H 1.09004 * 108.85257 * 79.29634 * 10 9 8 12 12 N 1.46500 * 108.85547 * 197.68052 * 10 9 8 13 13 C 1.34773 * 120.00111 * 278.08833 * 12 10 9 14 14 O 1.21284 * 120.00188 * 0.02562 * 13 12 10 15 15 C 1.50707 * 119.99981 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.46915 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99956 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99600 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00087 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99560 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47228 * 60.00284 * 21 19 17 23 23 H 1.48503 * 109.46586 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47216 * 299.99561 * 21 19 17 25 25 C 1.50751 * 112.60980 * 318.48952 * 10 9 8 26 26 C 1.39779 * 110.99907 * 163.68500 * 6 5 3 27 27 O 1.42904 * 109.47299 * 295.00533 * 3 2 1 28 28 C 1.42897 * 114.00345 * 154.55656 * 27 3 2 29 29 H 1.09007 * 109.46836 * 300.00090 * 1 2 3 30 30 H 1.08997 * 109.47178 * 59.99650 * 1 2 3 31 31 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46477 * 240.00567 * 2 1 3 33 33 H 1.08997 * 109.47178 * 120.00350 * 2 1 3 34 34 H 1.09001 * 109.47243 * 175.99953 * 5 3 2 35 35 H 1.08996 * 109.47175 * 56.00113 * 5 3 2 36 36 H 1.09000 * 109.74878 * 269.98642 * 7 6 5 37 37 H 1.08992 * 109.74887 * 30.70860 * 7 6 5 38 38 H 1.08998 * 109.05097 * 334.50321 * 8 7 6 39 39 H 1.09000 * 109.05065 * 215.60660 * 8 7 6 40 40 H 1.09000 * 108.98147 * 198.40203 * 9 8 7 41 41 H 1.09000 * 108.98064 * 79.68105 * 9 8 7 42 42 H 0.97000 * 120.00030 * 98.08277 * 12 10 9 43 43 H 1.08994 * 109.47160 * 300.00220 * 15 13 12 44 44 H 1.08991 * 109.46751 * 60.00111 * 15 13 12 45 45 H 0.97004 * 119.99597 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.54489 * 333.15592 * 25 10 9 47 47 H 1.09002 * 109.54181 * 212.87897 * 25 10 9 48 48 H 1.08997 * 109.02400 * 309.71293 * 26 6 5 49 49 H 1.09005 * 109.02471 * 68.54015 * 26 6 5 50 50 H 1.08999 * 109.47368 * 175.05069 * 28 27 3 51 51 H 1.09001 * 109.46891 * 295.05509 * 28 27 3 52 52 H 1.09003 * 109.47385 * 55.05103 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 3.9499 0.8742 1.4235 7 6 3.5338 1.7551 2.5328 8 6 3.2646 0.8916 3.7396 9 6 4.4931 0.8066 4.6613 10 6 5.8043 0.6639 3.8629 11 1 6.0965 1.6445 3.4873 12 7 6.8533 0.1715 4.7593 13 6 7.5100 1.0304 5.5639 14 8 7.2324 2.2109 5.5462 15 6 8.5887 0.5238 6.4864 16 16 9.2750 1.9078 7.4295 17 6 10.4762 1.0541 8.3954 18 1 10.5969 -0.0136 8.2866 19 6 11.2673 1.7538 9.2960 20 7 11.1205 3.0551 9.4282 21 14 12.5413 0.8487 10.3194 22 1 13.5206 0.1880 9.4196 23 1 13.2486 1.8154 11.1972 24 1 11.8670 -0.1767 11.1556 25 6 5.6736 -0.2847 2.6986 26 6 5.3018 0.5192 1.4335 27 8 1.6619 2.0815 -1.2210 28 6 1.5560 3.5032 -1.1245 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9341 2.4674 0.0543 35 1 3.9962 0.8457 -0.6766 36 1 4.3299 2.4647 2.7580 37 1 2.6275 2.2934 2.2555 38 1 2.9992 -0.1119 3.4070 39 1 2.4288 1.3123 4.2988 40 1 4.3834 -0.0551 5.3197 41 1 4.5442 1.7105 5.2682 42 1 7.0751 -0.7727 4.7738 43 1 8.1648 -0.2087 7.1733 44 1 9.3790 0.0564 5.8991 45 1 11.6732 3.5440 10.0579 46 1 4.8924 -1.0151 2.9092 47 1 6.6215 -0.7985 2.5387 48 1 5.5168 -0.0855 0.5525 49 1 5.9073 1.4249 1.3975 50 1 1.3517 3.9202 -2.1107 51 1 0.7436 3.7617 -0.4453 52 1 2.4919 3.9124 -0.7438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502108092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:18 Heat of formation + Delta-G solvation = -88.386798 kcal Electronic energy + Delta-G solvation = -28415.582757 eV Core-core repulsion = 24541.084579 eV Total energy + Delta-G solvation = -3874.498178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40477 -39.18955 -38.16036 -35.56630 -33.74269 -33.10046 -32.43147 -31.68461 -29.53734 -28.35653 -27.01257 -26.02840 -25.51234 -24.60078 -23.27930 -21.65458 -20.80829 -20.35246 -19.55366 -17.83367 -17.50133 -16.56788 -16.28830 -16.06575 -15.83852 -15.59124 -15.16111 -14.84309 -14.79534 -14.51638 -14.37495 -14.03873 -13.90421 -13.60698 -13.57201 -13.26354 -13.07917 -12.66151 -12.54380 -12.40505 -12.06447 -12.00535 -11.90654 -11.77304 -11.54471 -11.26358 -11.24546 -11.12430 -11.04468 -11.04116 -10.92979 -10.76686 -10.66538 -10.42087 -9.97013 -9.82076 -9.35148 -9.06471 -8.84570 -8.50381 -8.24019 -6.50071 -6.21749 -3.92308 3.04430 3.11617 3.22269 3.23191 3.27359 3.31492 3.72374 3.76565 4.20506 4.35353 4.49099 4.61198 4.66184 4.73330 4.84943 4.89031 4.93965 4.96357 4.98482 5.07693 5.12801 5.13303 5.21944 5.22595 5.24784 5.30969 5.35773 5.43611 5.45541 5.55437 5.58448 5.64243 5.66573 5.75234 5.78876 5.81926 5.84924 5.87452 5.90122 5.97959 6.10561 6.14391 6.22153 6.30131 6.69213 6.71385 6.90126 7.07215 7.59024 7.75036 8.34823 8.64550 9.23422 10.85613 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.001756 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.566970 B =15939.154677 C =16174.106723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.091 3.909 4 H 0.062 0.938 5 C 0.037 3.963 6 N -0.547 5.547 7 C 0.056 3.944 8 C -0.111 4.111 9 C -0.130 4.130 10 C 0.147 3.853 11 H 0.079 0.921 12 N -0.737 5.737 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.124 4.124 26 C 0.078 3.922 27 O -0.384 6.384 28 C 0.029 3.971 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.024 0.976 50 H 0.084 0.916 51 H 0.041 0.959 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.395 -7.130 -20.668 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.033 3.967 4 H 0.080 0.920 5 C -0.091 4.091 6 N -0.272 5.272 7 C -0.070 4.070 8 C -0.150 4.150 9 C -0.169 4.169 10 C 0.042 3.958 11 H 0.097 0.903 12 N -0.391 5.391 13 C 0.318 3.682 14 O -0.393 6.393 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.162 4.162 26 C -0.052 4.052 27 O -0.302 6.302 28 C -0.068 4.068 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.103 0.897 51 H 0.059 0.941 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.048 -5.473 -20.712 30.033 hybrid contribution 1.853 -1.388 0.897 2.484 sum -19.194 -6.862 -19.815 28.428 Atomic orbital electron populations 1.21744 0.95922 1.01434 1.01737 1.21517 0.95658 0.94181 1.03377 1.22215 0.93052 0.94841 0.86554 0.92043 1.22550 0.96596 0.98535 0.91440 1.58814 1.19979 1.45874 1.02571 1.21964 1.00307 0.94036 0.90704 1.21338 0.97346 1.01199 0.95098 1.22329 0.93357 1.02935 0.98254 1.20827 0.87217 0.98535 0.89203 0.90317 1.46269 1.38844 1.11264 1.42729 1.20315 0.81770 0.86234 0.79893 1.90688 1.65620 1.16400 1.66572 1.23538 0.99239 1.06589 1.01091 1.85380 1.44733 1.06835 1.46461 1.22832 1.22824 0.96350 1.26430 0.90996 1.24990 0.97149 0.94981 0.96454 1.70009 1.38851 1.06508 1.34939 0.86226 0.80531 0.79169 0.79583 1.19942 1.20804 1.19942 1.21789 1.02482 0.98416 0.93542 1.20878 0.87592 0.98386 0.98329 1.87923 1.89448 1.19198 1.33603 1.22783 0.99945 0.81527 1.02514 0.93190 0.92460 0.92843 0.91656 0.89194 0.94580 0.90049 0.93320 0.90971 0.90522 0.91754 0.91752 0.91347 0.76923 0.89295 0.89325 0.92140 0.89956 0.90434 0.90693 0.95807 0.89705 0.94074 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 37.16 0.36 -0.64 16 2 C -0.11 -0.78 5.58 -26.73 -0.15 -0.93 16 3 C 0.09 0.68 2.13 -26.73 -0.06 0.62 16 4 H 0.06 0.45 5.98 -51.93 -0.31 0.14 16 5 C 0.04 0.28 4.61 -3.83 -0.02 0.26 16 6 N -0.55 -4.31 3.25 -240.00 -0.78 -5.09 16 7 C 0.06 0.48 5.16 -4.52 -0.02 0.46 16 8 C -0.11 -0.96 5.41 -27.40 -0.15 -1.11 16 9 C -0.13 -1.45 5.43 -25.69 -0.14 -1.59 16 10 C 0.15 1.70 1.94 -68.44 -0.13 1.57 16 11 H 0.08 1.12 6.02 -51.93 -0.31 0.81 16 12 N -0.74 -9.72 4.95 -54.30 -0.27 -9.99 16 13 C 0.53 9.87 7.76 -10.98 -0.09 9.78 16 14 O -0.52 -11.70 15.53 5.55 0.09 -11.62 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.12 -1.06 5.20 -27.11 -0.14 -1.20 16 26 C 0.08 0.65 4.92 -6.74 -0.03 0.62 16 27 O -0.38 -3.26 9.90 -35.23 -0.35 -3.61 16 28 C 0.03 0.18 10.80 101.05 1.09 1.27 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.65 7.58 -51.93 -0.39 0.25 16 34 H 0.04 0.30 7.37 -51.93 -0.38 -0.09 16 35 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 36 H 0.05 0.51 6.66 -51.93 -0.35 0.16 16 37 H 0.07 0.55 5.91 -51.93 -0.31 0.24 16 38 H 0.08 0.63 7.26 -51.93 -0.38 0.25 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.40 4.07 8.49 -40.82 -0.35 3.73 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.08 0.65 7.11 -51.93 -0.37 0.28 16 47 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 48 H 0.07 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.02 0.24 7.54 -51.93 -0.39 -0.16 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 52 H 0.04 0.25 7.38 -51.93 -0.38 -0.13 16 LS Contribution 414.14 15.07 6.24 6.24 Total: -1.00 -33.71 414.14 -9.93 -43.64 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.31 Total: 0.15 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.95 Total: -6.77 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.32 Total: -40.58 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.26 Total: -15.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.71 -9.93 -43.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502108092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.744 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds