Wall clock time and date at job start Wed Apr 1 2020 03:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 H 1.09002 * 109.47106 * 54.99897 * 3 2 1 5 5 C 1.52996 * 109.47285 * 175.00395 * 3 2 1 6 6 N 1.46899 * 109.46789 * 296.00182 * 5 3 2 7 7 C 1.47634 * 110.99950 * 292.57360 * 6 5 3 8 8 C 1.50817 * 108.05142 * 150.35018 * 7 6 5 9 9 C 1.53822 * 111.62485 * 95.05918 * 8 7 6 10 10 C 1.54176 * 111.96757 * 319.04027 * 9 8 7 11 11 H 1.09004 * 108.85257 * 79.29634 * 10 9 8 12 12 N 1.46500 * 108.85547 * 197.68052 * 10 9 8 13 13 C 1.34773 * 120.00111 * 278.08833 * 12 10 9 14 14 O 1.21284 * 120.00188 * 0.02562 * 13 12 10 15 15 C 1.50707 * 119.99981 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.46915 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99956 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99600 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00087 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99560 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47228 * 60.00284 * 21 19 17 23 23 H 1.48503 * 109.46586 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47216 * 299.99561 * 21 19 17 25 25 C 1.50751 * 112.60980 * 318.48952 * 10 9 8 26 26 C 1.39779 * 110.99907 * 163.68500 * 6 5 3 27 27 O 1.42904 * 109.47299 * 295.00533 * 3 2 1 28 28 C 1.42897 * 114.00345 * 154.55656 * 27 3 2 29 29 H 1.09007 * 109.46836 * 300.00090 * 1 2 3 30 30 H 1.08997 * 109.47178 * 59.99650 * 1 2 3 31 31 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46477 * 240.00567 * 2 1 3 33 33 H 1.08997 * 109.47178 * 120.00350 * 2 1 3 34 34 H 1.09001 * 109.47243 * 175.99953 * 5 3 2 35 35 H 1.08996 * 109.47175 * 56.00113 * 5 3 2 36 36 H 1.09000 * 109.74878 * 269.98642 * 7 6 5 37 37 H 1.08992 * 109.74887 * 30.70860 * 7 6 5 38 38 H 1.08998 * 109.05097 * 334.50321 * 8 7 6 39 39 H 1.09000 * 109.05065 * 215.60660 * 8 7 6 40 40 H 1.09000 * 108.98147 * 198.40203 * 9 8 7 41 41 H 1.09000 * 108.98064 * 79.68105 * 9 8 7 42 42 H 0.97000 * 120.00030 * 98.08277 * 12 10 9 43 43 H 1.08994 * 109.47160 * 300.00220 * 15 13 12 44 44 H 1.08991 * 109.46751 * 60.00111 * 15 13 12 45 45 H 0.97004 * 119.99597 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.54489 * 333.15592 * 25 10 9 47 47 H 1.09002 * 109.54181 * 212.87897 * 25 10 9 48 48 H 1.08997 * 109.02400 * 309.71293 * 26 6 5 49 49 H 1.09005 * 109.02471 * 68.54015 * 26 6 5 50 50 H 1.08999 * 109.47368 * 175.05069 * 28 27 3 51 51 H 1.09001 * 109.46891 * 295.05509 * 28 27 3 52 52 H 1.09003 * 109.47385 * 55.05103 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 3.9499 0.8742 1.4235 7 6 3.5338 1.7551 2.5328 8 6 3.2646 0.8916 3.7396 9 6 4.4931 0.8066 4.6613 10 6 5.8043 0.6639 3.8629 11 1 6.0965 1.6445 3.4873 12 7 6.8533 0.1715 4.7593 13 6 7.5100 1.0304 5.5639 14 8 7.2324 2.2109 5.5462 15 6 8.5887 0.5238 6.4864 16 16 9.2750 1.9078 7.4295 17 6 10.4762 1.0541 8.3954 18 1 10.5969 -0.0136 8.2866 19 6 11.2673 1.7538 9.2960 20 7 11.1205 3.0551 9.4282 21 14 12.5413 0.8487 10.3194 22 1 13.5206 0.1880 9.4196 23 1 13.2486 1.8154 11.1972 24 1 11.8670 -0.1767 11.1556 25 6 5.6736 -0.2847 2.6986 26 6 5.3018 0.5192 1.4335 27 8 1.6619 2.0815 -1.2210 28 6 1.5560 3.5032 -1.1245 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9341 2.4674 0.0543 35 1 3.9962 0.8457 -0.6766 36 1 4.3299 2.4647 2.7580 37 1 2.6275 2.2934 2.2555 38 1 2.9992 -0.1119 3.4070 39 1 2.4288 1.3123 4.2988 40 1 4.3834 -0.0551 5.3197 41 1 4.5442 1.7105 5.2682 42 1 7.0751 -0.7727 4.7738 43 1 8.1648 -0.2087 7.1733 44 1 9.3790 0.0564 5.8991 45 1 11.6732 3.5440 10.0579 46 1 4.8924 -1.0151 2.9092 47 1 6.6215 -0.7985 2.5387 48 1 5.5168 -0.0855 0.5525 49 1 5.9073 1.4249 1.3975 50 1 1.3517 3.9202 -2.1107 51 1 0.7436 3.7617 -0.4453 52 1 2.4919 3.9124 -0.7438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502108092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:16 Heat of formation + Delta-G solvation = -111.033616 kcal Electronic energy + Delta-G solvation = -28416.564797 eV Core-core repulsion = 24541.084579 eV Total energy + Delta-G solvation = -3875.480218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.32302 -40.27310 -38.96537 -36.58868 -34.59824 -34.48051 -33.91182 -32.66490 -30.74044 -29.29414 -27.71630 -27.57538 -26.75202 -25.48736 -23.88303 -22.43777 -21.63904 -21.50593 -20.46138 -19.79715 -18.19507 -17.82764 -17.45132 -16.88747 -16.87151 -16.62724 -16.29767 -16.18507 -16.00492 -15.71328 -15.37043 -15.02619 -14.74578 -14.59391 -14.47530 -14.21802 -14.17807 -13.89524 -13.72405 -13.18673 -13.17822 -13.08595 -12.87203 -12.85973 -12.65602 -12.50679 -12.41633 -12.16142 -12.07155 -11.91974 -11.75648 -11.71873 -11.69644 -11.31066 -11.27887 -11.13699 -10.89204 -10.55461 -10.28977 -10.07058 -9.21081 -8.67946 -8.35327 -6.13762 1.26390 1.43368 1.46363 1.56218 1.61921 2.25702 2.30127 2.62211 2.98677 3.15183 3.31259 3.69704 3.72796 3.83932 3.99421 4.00138 4.06668 4.09806 4.19805 4.23302 4.29449 4.39495 4.46205 4.48748 4.50500 4.51750 4.54325 4.59341 4.67410 4.72054 4.74686 4.82511 4.84843 4.89170 4.98698 5.05949 5.08910 5.15535 5.19226 5.26549 5.31499 5.32631 5.40578 5.46202 5.55606 5.58213 6.03768 6.18717 6.30824 6.38798 6.53989 7.05706 7.27248 8.73641 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.001756 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.566970 B =15939.154677 C =16174.106723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.094 3.906 4 H 0.063 0.937 5 C 0.040 3.960 6 N -0.537 5.537 7 C 0.058 3.942 8 C -0.101 4.101 9 C -0.126 4.126 10 C 0.149 3.851 11 H 0.048 0.952 12 N -0.711 5.711 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.113 4.113 26 C 0.078 3.922 27 O -0.400 6.400 28 C 0.025 3.975 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.416 0.584 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.003 0.997 50 H 0.095 0.905 51 H 0.047 0.953 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.910 -10.164 -21.392 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C 0.036 3.964 4 H 0.081 0.919 5 C -0.088 4.088 6 N -0.263 5.263 7 C -0.069 4.069 8 C -0.140 4.140 9 C -0.165 4.165 10 C 0.045 3.955 11 H 0.066 0.934 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.151 4.151 26 C -0.051 4.051 27 O -0.318 6.318 28 C -0.071 4.071 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.022 0.978 50 H 0.114 0.886 51 H 0.066 0.934 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.587 -8.561 -21.472 31.629 hybrid contribution 1.926 -0.444 1.015 2.222 sum -19.662 -9.005 -20.457 29.769 Atomic orbital electron populations 1.21714 0.95636 1.01813 1.01397 1.21491 0.95864 0.93713 1.03285 1.22216 0.92677 0.95180 0.86358 0.91947 1.22534 0.96928 0.98060 0.91281 1.58877 1.19622 1.45303 1.02463 1.21940 0.99977 0.93816 0.91142 1.21274 0.96124 1.02094 0.94482 1.22274 0.94271 1.01421 0.98487 1.20969 0.86593 0.98085 0.89862 0.93366 1.46059 1.37878 1.11582 1.40992 1.20092 0.81760 0.85999 0.80272 1.90682 1.67079 1.18535 1.68209 1.23381 1.00111 1.03586 1.00997 1.85581 1.46036 1.12465 1.48532 1.23178 1.22903 0.96827 1.26604 0.89882 1.26143 0.99494 0.95827 0.97730 1.70182 1.40179 1.08508 1.35918 0.84998 0.77396 0.77852 0.77713 1.18626 1.20398 1.18615 1.21740 1.03862 0.97761 0.91779 1.20902 0.87441 0.97848 0.98958 1.87900 1.89514 1.20265 1.34168 1.22902 1.00189 0.80620 1.03433 0.92940 0.93364 0.92117 0.92050 0.88860 0.95475 0.89762 0.95828 0.89815 0.88930 0.90929 0.91006 0.94899 0.74639 0.87272 0.87285 0.92002 0.88183 0.89084 0.88905 0.97849 0.88636 0.93392 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.81 71.98 0.71 -1.02 16 2 C -0.11 -1.30 5.58 30.60 0.17 -1.13 16 3 C 0.09 1.27 2.13 30.59 0.07 1.33 16 4 H 0.06 0.83 5.98 -2.39 -0.01 0.81 16 5 C 0.04 0.56 4.61 86.30 0.40 0.96 16 6 N -0.54 -7.63 3.25 -913.23 -2.97 -10.60 16 7 C 0.06 0.95 5.16 85.45 0.44 1.39 16 8 C -0.10 -1.59 5.41 30.16 0.16 -1.42 16 9 C -0.13 -2.73 5.43 31.27 0.17 -2.56 16 10 C 0.15 3.35 1.94 44.66 0.09 3.43 16 11 H 0.05 1.43 6.02 -2.38 -0.01 1.41 16 12 N -0.71 -17.78 4.95 -444.10 -2.20 -19.98 16 13 C 0.53 19.79 7.76 87.66 0.68 20.47 16 14 O -0.57 -26.64 15.53 -3.04 -0.05 -26.69 16 15 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 16 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 17 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C -0.11 -1.65 5.20 30.35 0.16 -1.49 16 26 C 0.08 1.18 4.92 88.07 0.43 1.61 16 27 O -0.40 -6.38 9.90 -148.98 -1.47 -7.86 16 28 C 0.02 0.29 10.80 113.37 1.22 1.52 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.09 7.58 -2.39 -0.02 1.07 16 34 H 0.03 0.44 7.37 -2.39 -0.02 0.42 16 35 H 0.08 1.16 7.71 -2.39 -0.02 1.14 16 36 H 0.02 0.51 6.66 -2.39 -0.02 0.50 16 37 H 0.08 1.18 5.91 -2.39 -0.01 1.17 16 38 H 0.09 1.21 7.26 -2.39 -0.02 1.19 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 41 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.42 7.30 8.49 -92.71 -0.79 6.52 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.10 1.19 7.11 -2.39 -0.02 1.17 16 47 H 0.09 1.13 7.88 -2.39 -0.02 1.11 16 48 H 0.09 1.12 7.73 -2.39 -0.02 1.10 16 49 H 0.00 0.07 7.54 -2.38 -0.02 0.05 16 50 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.04 0.47 7.38 -2.39 -0.02 0.45 16 Total: -1.00 -76.31 414.14 0.82 -75.49 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.11 Total: 20.93 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 6.25 Total: -11.18 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -4.88 Total: -86.61 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.52 Total: -34.54 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -76.31 0.82 -75.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502108092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.539 kcal (2) G-P(sol) polarization free energy of solvation -76.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds