Wall clock time and date at job start Wed Apr 1 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 N 1.46496 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99628 * 0.02562 * 5 4 3 7 7 C 1.38811 * 119.99995 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47086 * 89.99855 * 9 7 5 11 11 H 1.48501 * 109.46891 * 210.00062 * 9 7 5 12 12 H 1.48499 * 109.46680 * 329.99700 * 9 7 5 13 13 N 1.46503 * 109.46979 * 119.99884 * 2 1 3 14 14 C 1.34780 * 119.99902 * 297.53208 * 13 2 1 15 15 O 1.21285 * 119.99905 * 4.74017 * 14 13 2 16 16 C 1.50689 * 120.00091 * 184.74026 * 14 13 2 17 17 H 1.09001 * 109.40554 * 24.67419 * 16 14 13 18 18 C 1.53080 * 109.43961 * 144.56559 * 16 14 13 19 19 C 1.53401 * 108.29945 * 168.27579 * 18 16 14 20 20 O 1.42824 * 108.37715 * 295.28092 * 19 18 16 21 21 C 1.35847 * 117.86536 * 49.16835 * 20 19 18 22 22 C 1.39143 * 118.50069 * 163.00148 * 21 20 19 23 23 C 1.37967 * 120.21398 * 179.76497 * 22 21 20 24 24 C 1.38286 * 119.95737 * 0.18722 * 23 22 21 25 25 C 1.38098 * 119.98655 * 359.57975 * 24 23 22 26 26 C 1.38370 * 121.80049 * 342.81467 * 21 20 19 27 27 C 1.52994 * 109.47202 * 239.99800 * 2 1 3 28 28 C 1.52998 * 117.49941 * 11.43544 * 27 2 1 29 29 C 1.53000 * 117.49847 * 302.81164 * 27 2 1 30 30 H 1.09002 * 109.47503 * 300.00189 * 1 2 3 31 31 H 1.09001 * 109.47264 * 60.00131 * 1 2 3 32 32 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47251 * 299.99603 * 3 2 1 34 34 H 1.09002 * 109.47113 * 59.99573 * 3 2 1 35 35 H 0.97003 * 120.00200 * 0.02562 * 4 3 2 36 36 H 0.96992 * 119.99922 * 180.02562 * 8 7 5 37 37 H 0.96992 * 120.00216 * 117.53270 * 13 2 1 38 38 H 1.08998 * 109.69747 * 48.56779 * 18 16 14 39 39 H 1.09008 * 109.69541 * 287.97463 * 18 16 14 40 40 H 1.09001 * 109.68356 * 175.55929 * 19 18 16 41 41 H 1.09001 * 109.68609 * 55.00022 * 19 18 16 42 42 H 1.07999 * 119.89154 * 359.73755 * 22 21 20 43 43 H 1.07998 * 120.01852 * 179.91830 * 23 22 21 44 44 H 1.08004 * 120.00514 * 179.81547 * 24 23 22 45 45 H 1.08004 * 119.84413 * 180.28895 * 25 24 23 46 46 H 1.09006 * 115.54677 * 157.14385 * 27 2 1 47 47 H 1.08993 * 117.50106 * 0.02562 * 28 27 2 48 48 H 1.09003 * 117.49933 * 145.01944 * 28 27 2 49 49 H 1.09007 * 117.49591 * 214.97748 * 29 27 2 50 50 H 1.08994 * 117.50030 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6496 3.5637 -0.0002 7 6 5.5778 2.6284 0.0002 8 7 6.2359 1.4885 0.0012 9 14 6.5118 4.2462 0.0004 10 1 6.7592 4.6748 1.4005 11 1 7.8094 4.0686 -0.6996 12 1 5.7092 5.2811 -0.6997 13 7 2.0183 -0.6906 1.1962 14 6 1.7342 -0.2018 2.4197 15 8 1.0036 0.7595 2.5340 16 6 2.3243 -0.8496 3.6456 17 1 3.2444 -1.3673 3.3743 18 6 2.6339 0.2251 4.6908 19 6 2.9504 -0.4725 6.0198 20 8 1.7735 -1.1480 6.4652 21 6 1.1212 -1.9406 5.5755 22 6 0.2081 -2.8717 6.0606 23 6 -0.4777 -3.6914 5.1881 24 6 -0.2551 -3.5910 3.8269 25 6 0.6468 -2.6647 3.3415 26 6 1.3398 -1.8406 4.2128 27 6 2.0400 -0.7213 -1.2492 28 6 1.0214 -1.0430 -2.3445 29 6 1.5821 -2.1647 -1.4679 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9900 0.6024 0.0006 36 1 7.2058 1.4886 0.0016 37 1 2.5460 -1.4996 1.1077 38 1 1.7692 0.8770 4.8147 39 1 3.4944 0.8124 4.3700 40 1 3.2512 0.2682 6.7608 41 1 3.7545 -1.1937 5.8736 42 1 0.0360 -2.9534 7.1237 43 1 -1.1848 -4.4139 5.5682 44 1 -0.7894 -4.2343 3.1434 45 1 0.8154 -2.5851 2.2777 46 1 3.0511 -0.4610 -1.5624 47 1 -0.0120 -0.7405 -2.1754 48 1 1.3622 -0.9943 -3.3787 49 1 2.2919 -2.8539 -1.9255 50 1 0.9179 -2.6005 -0.7217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568028628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:27 Heat of formation + Delta-G solvation = -7.754013 kcal Electronic energy + Delta-G solvation = -31754.026428 eV Core-core repulsion = 27747.580798 eV Total energy + Delta-G solvation = -4006.445630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10507 -39.80314 -37.80703 -37.55819 -34.73298 -34.11644 -33.44111 -31.21175 -30.64714 -30.29478 -29.65331 -26.44123 -25.78901 -23.96191 -23.50768 -22.66188 -22.36509 -22.06802 -20.73724 -19.55684 -18.78777 -17.98896 -17.18464 -17.09269 -16.68545 -16.18014 -15.71814 -15.24944 -15.00438 -14.62425 -14.47862 -14.33882 -14.01400 -13.83398 -13.58249 -13.38467 -13.26145 -13.06847 -12.63073 -12.54793 -12.29073 -12.09330 -11.93318 -11.90393 -11.56285 -11.44244 -11.10565 -10.98443 -10.88348 -10.82601 -10.81000 -10.74736 -10.61564 -10.18805 -10.09480 -9.82647 -9.67053 -9.37470 -8.88016 -8.75657 -8.57694 -8.21903 -6.84756 -5.74870 -3.00869 1.18780 1.34024 2.96481 3.19277 3.36427 3.44283 3.49931 3.51382 3.69373 4.09714 4.53027 4.61062 4.61637 4.67555 4.78624 4.87925 4.96510 5.07463 5.10691 5.13666 5.18685 5.26632 5.32876 5.36912 5.40683 5.47553 5.49559 5.60182 5.61780 5.71775 5.78684 5.88898 5.93865 5.96687 6.05548 6.18091 6.20342 6.21739 6.24626 6.27109 6.34039 6.42234 6.46166 6.57333 6.67598 6.70449 6.90870 7.12248 7.36442 7.73960 7.90546 8.44861 8.61863 9.56448 10.14522 10.50824 11.48223 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.004096 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.762464 B = 6833.838059 C = 8851.969496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.202 3.798 3 C 0.143 3.857 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.710 5.710 14 C 0.539 3.461 15 O -0.528 6.528 16 C -0.064 4.064 17 H 0.101 0.899 18 C -0.146 4.146 19 C 0.064 3.936 20 O -0.317 6.317 21 C 0.142 3.858 22 C -0.152 4.152 23 C -0.088 4.088 24 C -0.153 4.153 25 C -0.081 4.081 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.183 4.183 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.046 0.954 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.396 0.604 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -13.356 7.018 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.404 6.404 16 C -0.085 4.085 17 H 0.119 0.881 18 C -0.184 4.184 19 C -0.011 4.011 20 O -0.231 6.231 21 C 0.097 3.903 22 C -0.171 4.171 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.100 4.100 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.210 4.210 29 C -0.220 4.220 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.230 0.770 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.244 -12.402 7.276 18.885 hybrid contribution 1.351 0.280 -0.423 1.444 sum -10.892 -12.121 6.853 17.678 Atomic orbital electron populations 1.22283 0.94838 1.01511 1.03435 1.20025 0.92970 0.93191 0.82117 1.21062 0.86453 0.91691 0.99313 1.42239 0.99161 1.06160 1.89428 1.19241 0.89007 0.86232 1.41597 0.91407 1.24657 0.96262 0.96635 1.03501 1.69643 1.06608 1.23753 1.58608 0.86227 0.79433 0.83339 0.77471 1.21880 1.21892 1.20849 1.46024 1.55617 1.29278 1.05084 1.19862 0.80531 0.83437 0.83774 1.90624 1.36533 1.26939 1.86258 1.20165 0.98054 0.95667 0.94638 0.88088 1.22148 1.05080 0.97665 0.93497 1.23035 0.85144 0.95903 0.97024 1.85970 1.40162 1.58794 1.38151 1.18660 0.93428 0.90659 0.87592 1.20566 0.99395 0.96584 1.00544 1.20909 0.98391 0.98159 0.93135 1.20970 1.00232 1.00317 0.95561 1.21004 0.95208 0.94311 0.99435 1.19450 1.02324 1.00131 0.92515 1.22586 1.00848 0.96679 0.96713 1.23046 0.99112 1.02878 0.95963 1.22934 1.04002 0.91640 1.03473 0.90359 0.91702 0.93034 0.95882 0.93588 0.78408 0.93739 0.76987 0.88855 0.88617 0.87016 0.91547 0.85277 0.85531 0.85920 0.85757 0.85970 0.88265 0.88916 0.88922 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 7.06 37.16 0.26 -2.10 16 2 C 0.20 3.27 0.54 -131.82 -0.07 3.20 16 3 C 0.14 3.02 4.93 -4.04 -0.02 3.00 16 4 N -0.73 -17.99 5.03 -59.91 -0.30 -18.29 16 5 C -0.23 -6.44 9.99 -15.06 -0.15 -6.59 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.71 -10.81 4.00 -47.61 -0.19 -11.01 16 14 C 0.54 9.00 5.22 -10.99 -0.06 8.94 16 15 O -0.53 -10.54 12.29 5.55 0.07 -10.48 16 16 C -0.06 -0.91 2.70 -92.85 -0.25 -1.16 16 17 H 0.10 1.33 8.13 -51.93 -0.42 0.90 16 18 C -0.15 -2.07 5.35 -26.48 -0.14 -2.21 16 19 C 0.06 0.74 7.03 37.37 0.26 1.00 16 20 O -0.32 -4.22 10.27 -19.26 -0.20 -4.42 16 21 C 0.14 1.90 6.47 -39.20 -0.25 1.65 16 22 C -0.15 -1.74 9.94 -39.34 -0.39 -2.13 16 23 C -0.09 -0.88 10.04 -39.66 -0.40 -1.28 16 24 C -0.15 -1.60 10.04 -39.61 -0.40 -2.00 16 25 C -0.08 -0.99 9.10 -39.53 -0.36 -1.35 16 26 C -0.14 -1.93 5.43 -104.44 -0.57 -2.50 16 27 C -0.15 -2.22 4.87 -90.62 -0.44 -2.66 16 28 C -0.17 -2.12 9.61 -26.73 -0.26 -2.38 16 29 C -0.18 -2.12 9.68 -26.73 -0.26 -2.38 16 30 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 31 H 0.06 0.88 6.84 -51.93 -0.36 0.52 16 32 H 0.05 0.65 7.01 -51.93 -0.36 0.29 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 1.09 6.16 -51.93 -0.32 0.77 16 35 H 0.38 9.69 6.64 -40.82 -0.27 9.42 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.40 5.30 8.30 -40.82 -0.34 4.96 16 38 H 0.09 1.49 7.46 -51.93 -0.39 1.11 16 39 H 0.10 1.42 8.14 -51.92 -0.42 0.99 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.12 1.42 6.75 -52.48 -0.35 1.07 16 46 H 0.12 2.20 7.09 -51.93 -0.37 1.83 16 47 H 0.10 1.14 5.87 -51.93 -0.30 0.83 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.96 7.43 -51.93 -0.39 0.57 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -32.51 392.04 -10.14 -42.65 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -7.54 Total: 16.48 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.59 Total: -11.48 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.23 Total: -56.20 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.13 Total: -14.89 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.51 -10.14 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568028628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.898 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds