Wall clock time and date at job start Wed Apr 1 2020 04:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 N 1.46496 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99628 * 0.02562 * 5 4 3 7 7 C 1.38811 * 119.99995 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47086 * 89.99855 * 9 7 5 11 11 H 1.48501 * 109.46891 * 210.00062 * 9 7 5 12 12 H 1.48499 * 109.46680 * 329.99700 * 9 7 5 13 13 N 1.46503 * 109.46979 * 119.99884 * 2 1 3 14 14 C 1.34780 * 119.99902 * 297.53208 * 13 2 1 15 15 O 1.21285 * 119.99905 * 4.74017 * 14 13 2 16 16 C 1.50689 * 120.00091 * 184.74026 * 14 13 2 17 17 H 1.09001 * 109.40554 * 24.67419 * 16 14 13 18 18 C 1.53080 * 109.43961 * 144.56559 * 16 14 13 19 19 C 1.53401 * 108.29945 * 168.27579 * 18 16 14 20 20 O 1.42824 * 108.37715 * 295.28092 * 19 18 16 21 21 C 1.35847 * 117.86536 * 49.16835 * 20 19 18 22 22 C 1.39143 * 118.50069 * 163.00148 * 21 20 19 23 23 C 1.37967 * 120.21398 * 179.76497 * 22 21 20 24 24 C 1.38286 * 119.95737 * 0.18722 * 23 22 21 25 25 C 1.38098 * 119.98655 * 359.57975 * 24 23 22 26 26 C 1.38370 * 121.80049 * 342.81467 * 21 20 19 27 27 C 1.52994 * 109.47202 * 239.99800 * 2 1 3 28 28 C 1.52998 * 117.49941 * 11.43544 * 27 2 1 29 29 C 1.53000 * 117.49847 * 302.81164 * 27 2 1 30 30 H 1.09002 * 109.47503 * 300.00189 * 1 2 3 31 31 H 1.09001 * 109.47264 * 60.00131 * 1 2 3 32 32 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47251 * 299.99603 * 3 2 1 34 34 H 1.09002 * 109.47113 * 59.99573 * 3 2 1 35 35 H 0.97003 * 120.00200 * 0.02562 * 4 3 2 36 36 H 0.96992 * 119.99922 * 180.02562 * 8 7 5 37 37 H 0.96992 * 120.00216 * 117.53270 * 13 2 1 38 38 H 1.08998 * 109.69747 * 48.56779 * 18 16 14 39 39 H 1.09008 * 109.69541 * 287.97463 * 18 16 14 40 40 H 1.09001 * 109.68356 * 175.55929 * 19 18 16 41 41 H 1.09001 * 109.68609 * 55.00022 * 19 18 16 42 42 H 1.07999 * 119.89154 * 359.73755 * 22 21 20 43 43 H 1.07998 * 120.01852 * 179.91830 * 23 22 21 44 44 H 1.08004 * 120.00514 * 179.81547 * 24 23 22 45 45 H 1.08004 * 119.84413 * 180.28895 * 25 24 23 46 46 H 1.09006 * 115.54677 * 157.14385 * 27 2 1 47 47 H 1.08993 * 117.50106 * 0.02562 * 28 27 2 48 48 H 1.09003 * 117.49933 * 145.01944 * 28 27 2 49 49 H 1.09007 * 117.49591 * 214.97748 * 29 27 2 50 50 H 1.08994 * 117.50030 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6496 3.5637 -0.0002 7 6 5.5778 2.6284 0.0002 8 7 6.2359 1.4885 0.0012 9 14 6.5118 4.2462 0.0004 10 1 6.7592 4.6748 1.4005 11 1 7.8094 4.0686 -0.6996 12 1 5.7092 5.2811 -0.6997 13 7 2.0183 -0.6906 1.1962 14 6 1.7342 -0.2018 2.4197 15 8 1.0036 0.7595 2.5340 16 6 2.3243 -0.8496 3.6456 17 1 3.2444 -1.3673 3.3743 18 6 2.6339 0.2251 4.6908 19 6 2.9504 -0.4725 6.0198 20 8 1.7735 -1.1480 6.4652 21 6 1.1212 -1.9406 5.5755 22 6 0.2081 -2.8717 6.0606 23 6 -0.4777 -3.6914 5.1881 24 6 -0.2551 -3.5910 3.8269 25 6 0.6468 -2.6647 3.3415 26 6 1.3398 -1.8406 4.2128 27 6 2.0400 -0.7213 -1.2492 28 6 1.0214 -1.0430 -2.3445 29 6 1.5821 -2.1647 -1.4679 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9900 0.6024 0.0006 36 1 7.2058 1.4886 0.0016 37 1 2.5460 -1.4996 1.1077 38 1 1.7692 0.8770 4.8147 39 1 3.4944 0.8124 4.3700 40 1 3.2512 0.2682 6.7608 41 1 3.7545 -1.1937 5.8736 42 1 0.0360 -2.9534 7.1237 43 1 -1.1848 -4.4139 5.5682 44 1 -0.7894 -4.2343 3.1434 45 1 0.8154 -2.5851 2.2777 46 1 3.0511 -0.4610 -1.5624 47 1 -0.0120 -0.7405 -2.1754 48 1 1.3622 -0.9943 -3.3787 49 1 2.2919 -2.8539 -1.9255 50 1 0.9179 -2.6005 -0.7217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568028628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:26 Heat of formation + Delta-G solvation = -27.383765 kcal Electronic energy + Delta-G solvation = -31754.877638 eV Core-core repulsion = 27747.580798 eV Total energy + Delta-G solvation = -4007.296840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18341 -40.99801 -39.03539 -38.44497 -36.39323 -35.28220 -34.99855 -33.01115 -31.66767 -31.19854 -31.09875 -27.66457 -27.36372 -25.25110 -24.67947 -24.12352 -23.55681 -23.13310 -21.82416 -20.69509 -20.12405 -19.23081 -18.98751 -18.25634 -17.67520 -17.14492 -17.00970 -16.74097 -16.28610 -15.94273 -15.73771 -15.58673 -15.21420 -15.12879 -14.90935 -14.75373 -14.42747 -14.23617 -14.02493 -13.83124 -13.66344 -13.40121 -13.17461 -13.10985 -12.89490 -12.81340 -12.50423 -12.47604 -12.23797 -12.09469 -12.02811 -12.01060 -11.82734 -11.76906 -11.60638 -11.24807 -11.07999 -10.91892 -10.55947 -9.96077 -9.76047 -9.13778 -8.94857 -7.95969 -5.21946 0.30839 0.46032 1.43788 1.44570 1.53124 1.65407 2.11776 2.34563 2.54079 2.79576 3.03836 3.36323 3.45237 3.57726 3.62269 3.67613 3.83074 3.90929 3.95382 4.07773 4.11499 4.18800 4.22491 4.24775 4.31283 4.46393 4.50804 4.52561 4.55001 4.62028 4.67514 4.78756 4.85718 4.89140 4.90586 4.97477 4.99783 5.02820 5.06316 5.12501 5.28825 5.32439 5.33762 5.44254 5.46986 5.47928 5.57932 5.67816 5.86032 6.26494 6.42890 6.64236 7.32414 7.34449 8.08301 8.37760 9.26713 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.004096 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.762464 B = 6833.838059 C = 8851.969496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.212 3.788 3 C 0.145 3.855 4 N -0.727 5.727 5 C -0.244 4.244 6 H 0.061 0.939 7 C -0.065 4.065 8 N -0.961 5.961 9 Si 0.965 3.035 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.061 4.061 17 H 0.109 0.891 18 C -0.145 4.145 19 C 0.069 3.931 20 O -0.327 6.327 21 C 0.117 3.883 22 C -0.159 4.159 23 C -0.081 4.081 24 C -0.150 4.150 25 C -0.094 4.094 26 C -0.160 4.160 27 C -0.176 4.176 28 C -0.163 4.163 29 C -0.154 4.154 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.016 0.984 34 H 0.019 0.981 35 H 0.378 0.622 36 H 0.251 0.749 37 H 0.406 0.594 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.151 0.849 45 H 0.128 0.872 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 -15.662 6.956 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 C 0.017 3.983 4 N -0.370 5.370 5 C -0.376 4.376 6 H 0.079 0.921 7 C -0.258 4.258 8 N -0.612 5.612 9 Si 0.795 3.205 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.351 5.351 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.082 4.082 17 H 0.127 0.873 18 C -0.183 4.183 19 C -0.006 4.006 20 O -0.241 6.241 21 C 0.072 3.928 22 C -0.178 4.178 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.112 4.112 26 C -0.162 4.162 27 C -0.195 4.195 28 C -0.200 4.200 29 C -0.191 4.191 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.211 0.789 36 H 0.060 0.940 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.104 0.896 47 H 0.130 0.870 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.487 -14.729 7.203 21.230 hybrid contribution 1.678 0.997 -0.421 1.997 sum -11.809 -13.731 6.782 19.339 Atomic orbital electron populations 1.22190 0.93081 1.03023 1.02747 1.19816 0.94024 0.90301 0.83212 1.21080 0.84431 0.95358 0.97433 1.42270 1.00586 1.05054 1.89105 1.19516 0.89674 0.87116 1.41312 0.92115 1.25361 0.96941 0.99730 1.03724 1.69772 1.06551 1.25403 1.59457 0.85267 0.78021 0.79898 0.77348 1.21644 1.21685 1.20112 1.45987 1.55259 1.29308 1.04572 1.20331 0.79903 0.82904 0.84717 1.90606 1.38357 1.28664 1.86877 1.20137 0.98692 0.95869 0.93514 0.87329 1.22074 1.03264 0.97551 0.95390 1.23120 0.85153 0.96404 0.95908 1.85945 1.40674 1.59076 1.38449 1.18988 0.94506 0.91627 0.87645 1.20897 0.98878 0.96225 1.01773 1.21339 0.97948 0.97825 0.92787 1.21340 0.99341 0.99712 0.96428 1.21169 0.95738 0.94738 0.99527 1.19438 1.03057 1.00627 0.93032 1.22257 0.99949 1.00039 0.97292 1.23171 0.98856 1.02409 0.95612 1.23033 1.03362 0.89887 1.02848 0.92796 0.90642 0.90281 0.96569 0.96358 0.78873 0.93997 0.75798 0.91382 0.90106 0.84965 0.90152 0.83804 0.82143 0.83151 0.85379 0.89573 0.86985 0.88352 0.87754 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 7.06 71.98 0.51 -3.78 16 2 C 0.21 6.92 0.54 3.60 0.00 6.92 16 3 C 0.14 6.38 4.93 86.38 0.43 6.81 16 4 N -0.73 -37.52 5.03 -343.45 -1.73 -39.24 16 5 C -0.24 -14.14 9.99 84.03 0.84 -13.30 16 6 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 7 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 8 N -0.96 -57.68 13.06 21.65 0.28 -57.40 16 9 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 N -0.70 -21.62 4.00 -422.93 -1.69 -23.31 16 14 C 0.53 18.53 5.22 87.65 0.46 18.99 16 15 O -0.57 -23.90 12.29 -3.04 -0.04 -23.94 16 16 C -0.06 -1.80 2.70 -12.24 -0.03 -1.83 16 17 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 18 C -0.14 -4.35 5.35 30.76 0.16 -4.18 16 19 C 0.07 1.60 7.03 72.12 0.51 2.10 16 20 O -0.33 -8.66 10.27 -91.83 -0.94 -9.61 16 21 C 0.12 3.08 6.47 22.52 0.15 3.22 16 22 C -0.16 -3.34 9.94 22.42 0.22 -3.12 16 23 C -0.08 -1.37 10.04 22.22 0.22 -1.14 16 24 C -0.15 -2.70 10.04 22.25 0.22 -2.48 16 25 C -0.09 -2.14 9.10 22.30 0.20 -1.93 16 26 C -0.16 -4.29 5.43 -19.75 -0.11 -4.39 16 27 C -0.18 -5.13 4.87 -10.80 -0.05 -5.18 16 28 C -0.16 -3.63 9.61 30.59 0.29 -3.33 16 29 C -0.15 -3.12 9.68 30.59 0.30 -2.83 16 30 H 0.05 1.82 6.19 -2.39 -0.01 1.81 16 31 H 0.07 1.94 6.84 -2.39 -0.02 1.93 16 32 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.02 0.92 6.16 -2.39 -0.01 0.91 16 35 H 0.38 19.93 6.64 -92.71 -0.62 19.32 16 36 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.41 10.77 8.30 -92.71 -0.77 10.00 16 38 H 0.07 2.36 7.46 -2.39 -0.02 2.34 16 39 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.13 2.71 6.75 -2.91 -0.02 2.69 16 46 H 0.09 3.18 7.09 -2.38 -0.02 3.17 16 47 H 0.11 2.22 5.87 -2.39 -0.01 2.20 16 48 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 50 H 0.11 1.85 7.43 -2.39 -0.02 1.83 16 Total: -1.00 -72.93 392.04 2.28 -70.65 By element: Atomic # 1 Polarization: 46.97 SS G_CDS: -0.41 Total: 46.56 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.79 Total: -12.74 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -3.14 Total: -119.96 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.98 Total: -33.55 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -72.93 2.28 -70.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568028628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.265 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds