Wall clock time and date at job start Wed Apr 1 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47367 * 305.08270 * 3 2 1 5 5 C 1.53005 * 109.47073 * 185.08509 * 3 2 1 6 6 N 1.46899 * 109.46825 * 180.02562 * 5 3 2 7 7 C 1.46905 * 110.99417 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.46931 * 179.97438 * 7 6 5 9 9 C 1.52994 * 110.30527 * 300.70411 * 8 7 6 10 10 C 1.54279 * 110.34316 * 178.52292 * 8 7 6 11 11 C 1.54392 * 104.96218 * 241.13028 * 10 8 7 12 12 N 1.48148 * 104.61479 * 23.86770 * 11 10 8 13 13 C 1.34778 * 127.83481 * 140.38785 * 12 11 10 14 14 O 1.21281 * 119.99754 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00234 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47370 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00092 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00552 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47099 * 59.99938 * 21 19 17 23 23 H 1.48500 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47030 * 300.00450 * 21 19 17 25 25 C 1.48414 * 104.33914 * 320.38849 * 12 11 10 26 26 O 1.42900 * 109.47309 * 65.08470 * 3 2 1 27 27 C 1.42897 * 114.00165 * 259.14583 * 26 3 2 28 28 H 1.09003 * 109.46821 * 174.21442 * 1 2 3 29 29 H 1.09001 * 109.47418 * 294.21112 * 1 2 3 30 30 H 1.09000 * 109.47302 * 54.21277 * 1 2 3 31 31 H 1.08998 * 109.47318 * 239.99937 * 2 1 3 32 32 H 1.09002 * 109.47372 * 119.99746 * 2 1 3 33 33 H 1.08999 * 109.46633 * 299.99574 * 5 3 2 34 34 H 1.08999 * 109.47109 * 59.99586 * 5 3 2 35 35 H 1.00900 * 111.00669 * 56.04961 * 6 5 3 36 36 H 1.08993 * 109.47265 * 299.99193 * 7 6 5 37 37 H 1.08994 * 109.47533 * 60.00070 * 7 6 5 38 38 H 1.08996 * 109.47719 * 59.29613 * 9 8 7 39 39 H 1.08999 * 109.47253 * 179.29985 * 9 8 7 40 40 H 1.09001 * 109.46884 * 299.29546 * 9 8 7 41 41 H 1.08996 * 110.34416 * 0.02562 * 10 8 7 42 42 H 1.09005 * 110.34400 * 122.26233 * 10 8 7 43 43 H 1.08999 * 110.40597 * 142.65200 * 11 10 8 44 44 H 1.09004 * 110.40937 * 264.96641 * 11 10 8 45 45 H 1.09005 * 109.47062 * 299.99658 * 15 13 12 46 46 H 1.09000 * 109.47101 * 59.99798 * 15 13 12 47 47 H 0.97006 * 120.00028 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.45139 * 280.87503 * 25 12 11 49 49 H 1.08998 * 110.49348 * 158.35866 * 25 12 11 50 50 H 1.09008 * 109.46858 * 65.64348 * 27 26 3 51 51 H 1.08994 * 109.47706 * 185.64638 * 27 26 3 52 52 H 1.09007 * 109.46859 * 305.65127 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9819 -0.8409 5 6 3.5647 1.4444 -0.1279 6 7 4.0543 2.8294 -0.1272 7 6 5.5177 2.8703 -0.2494 8 6 5.9892 4.3259 -0.2458 9 6 5.3549 5.0924 -1.4081 10 6 7.5279 4.3915 -0.3361 11 6 7.9736 5.0993 0.9616 12 7 6.8668 4.8602 1.9169 13 6 6.9561 4.5788 3.2320 14 8 5.9487 4.4083 3.8853 15 6 8.3077 4.4760 3.8905 16 16 8.0957 4.0899 5.6461 17 6 9.7824 4.0293 6.1519 18 1 10.5685 4.2072 5.4331 19 6 10.1008 3.7528 7.4743 20 7 9.1427 3.5355 8.3504 21 14 11.8891 3.6878 8.0105 22 1 12.5308 5.0022 7.7542 23 1 11.9600 3.3761 9.4607 24 1 12.5980 2.6328 7.2426 25 6 5.6373 5.0007 1.0976 26 8 1.6636 2.0808 1.2219 27 6 0.5241 2.9350 1.1044 28 1 -0.3633 -1.0225 -0.1036 29 1 -0.3634 0.4214 0.9373 30 1 -0.3634 0.6009 -0.8336 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.0004 0.9050 0.7131 34 1 3.8517 0.9575 -1.0598 35 1 3.7461 3.3216 0.6979 36 1 5.9673 2.3404 0.5902 37 1 5.8179 2.3939 -1.1826 38 1 4.2694 5.0591 -1.3160 39 1 5.6899 6.1294 -1.3853 40 1 5.6538 4.6347 -2.3511 41 1 7.9479 3.3868 -0.3835 42 1 7.8320 4.9714 -1.2076 43 1 8.8993 4.6611 1.3349 44 1 8.1031 6.1674 0.7868 45 1 8.8857 3.6852 3.4122 46 1 8.8349 5.4245 3.7878 47 1 9.3653 3.3427 9.2746 48 1 5.4005 6.0534 0.9436 49 1 4.8013 4.4878 1.5730 50 1 -0.3554 2.3367 0.8661 51 1 0.3632 3.4579 2.0471 52 1 0.6952 3.6618 0.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569660457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:49 Heat of formation + Delta-G solvation = -89.572420 kcal Electronic energy + Delta-G solvation = -28627.105295 eV Core-core repulsion = 24752.555705 eV Total energy + Delta-G solvation = -3874.549591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.14982 -38.94599 -37.84932 -35.55681 -33.70624 -32.69949 -32.41552 -29.79653 -29.51191 -28.79353 -26.63227 -25.98863 -25.46221 -25.05204 -23.29191 -22.28759 -21.34942 -19.29702 -19.13186 -17.64915 -17.20766 -16.77038 -16.27310 -15.91962 -15.55906 -15.10572 -14.95015 -14.79208 -14.68657 -14.49679 -14.13645 -13.97138 -13.87310 -13.42648 -13.26201 -12.87698 -12.75697 -12.61025 -12.60269 -12.32801 -12.26443 -12.13398 -11.97364 -11.73823 -11.69049 -11.47741 -11.38034 -11.03434 -11.03087 -10.98747 -10.88829 -10.73901 -10.73619 -10.65499 -9.80834 -9.67053 -9.35884 -9.04835 -8.61684 -8.49685 -8.21783 -6.48689 -6.20110 -3.90797 2.93648 3.09966 3.24155 3.26752 3.30033 3.58766 3.63979 3.85713 4.21422 4.34790 4.49267 4.59615 4.65898 4.76058 4.79880 5.01548 5.03687 5.08739 5.10858 5.12921 5.14739 5.17913 5.19562 5.26222 5.37917 5.46153 5.47656 5.50540 5.52734 5.55692 5.60967 5.62540 5.63928 5.67979 5.70663 5.78797 5.81189 5.82815 5.93210 5.96507 6.01094 6.03013 6.14983 6.15823 6.43206 6.80045 7.03342 7.22984 7.60309 7.77585 8.36241 8.60329 9.24761 10.87254 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.002418 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.881495 B =11574.875685 C =13037.995709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.091 3.909 4 H 0.069 0.931 5 C 0.057 3.943 6 N -0.688 5.688 7 C 0.073 3.927 8 C -0.073 4.073 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.101 3.899 12 N -0.630 5.630 13 C 0.553 3.447 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.114 3.886 26 O -0.380 6.380 27 C 0.029 3.971 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.349 0.651 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.269 0.731 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.041 0.959 51 H 0.084 0.916 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 -1.189 -24.956 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.032 3.968 4 H 0.087 0.913 5 C -0.073 4.073 6 N -0.321 5.321 7 C -0.056 4.056 8 C -0.074 4.074 9 C -0.183 4.183 10 C -0.165 4.165 11 C -0.023 4.023 12 N -0.368 5.368 13 C 0.342 3.658 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.009 4.009 26 O -0.299 6.299 27 C -0.068 4.068 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.060 0.940 51 H 0.102 0.898 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.733 -1.454 -24.136 27.807 hybrid contribution 2.505 -0.112 0.223 2.517 sum -11.228 -1.566 -23.913 26.464 Atomic orbital electron populations 1.21819 0.95596 1.01745 1.01869 1.21974 0.96527 0.96782 1.02849 1.22243 0.94283 0.92855 0.87375 0.91288 1.22115 0.93623 0.90425 1.01136 1.60565 1.10430 1.14202 1.46871 1.21966 0.87700 0.95188 1.00777 1.21519 0.94988 0.95349 0.95551 1.21709 1.01706 0.98618 0.96302 1.22654 0.94517 1.01620 0.97689 1.22342 0.91222 1.00119 0.88575 1.49077 1.07902 1.72096 1.07688 1.19985 0.91432 0.75175 0.79252 1.90715 1.37915 1.48567 1.61771 1.23498 0.96123 1.04801 1.05238 1.85411 1.11007 1.91908 0.94997 1.22816 0.91897 1.56147 0.97500 0.91013 1.24993 0.98554 0.94573 0.95461 1.70012 1.32141 1.44598 1.03529 0.86226 0.82935 0.78726 0.77620 1.19927 1.20800 1.19952 1.22409 0.88879 1.00151 0.89472 1.87939 1.47710 1.62154 1.32062 1.22903 0.88156 0.93210 1.02483 0.92597 0.92153 0.92982 0.91076 0.90948 0.94260 0.90104 0.83011 0.94740 0.90908 0.91291 0.92995 0.92617 0.90828 0.90070 0.90058 0.91180 0.89438 0.89356 0.92128 0.91246 0.90190 0.94028 0.89770 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.86 37.16 0.33 -0.75 16 2 C -0.14 -1.13 5.64 -26.73 -0.15 -1.28 16 3 C 0.09 0.82 2.54 -26.73 -0.07 0.75 16 4 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 5 C 0.06 0.54 5.42 -3.82 -0.02 0.52 16 6 N -0.69 -6.97 5.76 -113.78 -0.65 -7.62 16 7 C 0.07 0.74 4.47 -3.82 -0.02 0.72 16 8 C -0.07 -0.68 0.82 -153.11 -0.13 -0.81 16 9 C -0.13 -0.97 8.08 37.15 0.30 -0.67 16 10 C -0.13 -1.09 6.30 -25.33 -0.16 -1.25 16 11 C 0.10 1.11 6.92 -2.41 -0.02 1.09 16 12 N -0.63 -9.43 3.32 -169.08 -0.56 -9.99 16 13 C 0.55 11.09 7.93 -10.99 -0.09 11.00 16 14 O -0.52 -12.39 16.14 5.56 0.09 -12.30 16 15 C -0.15 -3.09 5.13 36.00 0.18 -2.91 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.11 1.42 6.02 -2.26 -0.01 1.41 16 26 O -0.38 -4.25 9.47 -35.23 -0.33 -4.59 16 27 C 0.03 0.25 10.48 101.05 1.06 1.31 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 6.58 -51.93 -0.34 0.13 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.35 4.14 6.14 -39.29 -0.24 3.90 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.58 7.62 -51.93 -0.40 0.18 16 39 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 42 H 0.08 0.55 7.71 -51.93 -0.40 0.14 16 43 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.72 7.95 -51.91 -0.41 1.31 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 49 H 0.08 1.14 5.85 -51.93 -0.30 0.84 16 50 H 0.04 0.30 6.00 -51.92 -0.31 -0.01 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.04 0.33 7.99 -51.92 -0.41 -0.08 16 LS Contribution 421.23 15.07 6.35 6.35 Total: -1.00 -34.54 421.23 -9.65 -44.18 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.44 Total: 1.05 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 1.41 Total: -4.02 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.48 Total: -43.37 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.24 Total: -16.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.54 -9.65 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569660457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.391 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds