Wall clock time and date at job start Wed Apr 1 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47367 * 305.08270 * 3 2 1 5 5 C 1.53005 * 109.47073 * 185.08509 * 3 2 1 6 6 N 1.46899 * 109.46825 * 180.02562 * 5 3 2 7 7 C 1.46905 * 110.99417 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.46931 * 179.97438 * 7 6 5 9 9 C 1.52994 * 110.30527 * 300.70411 * 8 7 6 10 10 C 1.54279 * 110.34316 * 178.52292 * 8 7 6 11 11 C 1.54392 * 104.96218 * 241.13028 * 10 8 7 12 12 N 1.48148 * 104.61479 * 23.86770 * 11 10 8 13 13 C 1.34778 * 127.83481 * 140.38785 * 12 11 10 14 14 O 1.21281 * 119.99754 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00234 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47370 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00092 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00552 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47099 * 59.99938 * 21 19 17 23 23 H 1.48500 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47030 * 300.00450 * 21 19 17 25 25 C 1.48414 * 104.33914 * 320.38849 * 12 11 10 26 26 O 1.42900 * 109.47309 * 65.08470 * 3 2 1 27 27 C 1.42897 * 114.00165 * 259.14583 * 26 3 2 28 28 H 1.09003 * 109.46821 * 174.21442 * 1 2 3 29 29 H 1.09001 * 109.47418 * 294.21112 * 1 2 3 30 30 H 1.09000 * 109.47302 * 54.21277 * 1 2 3 31 31 H 1.08998 * 109.47318 * 239.99937 * 2 1 3 32 32 H 1.09002 * 109.47372 * 119.99746 * 2 1 3 33 33 H 1.08999 * 109.46633 * 299.99574 * 5 3 2 34 34 H 1.08999 * 109.47109 * 59.99586 * 5 3 2 35 35 H 1.00900 * 111.00669 * 56.04961 * 6 5 3 36 36 H 1.08993 * 109.47265 * 299.99193 * 7 6 5 37 37 H 1.08994 * 109.47533 * 60.00070 * 7 6 5 38 38 H 1.08996 * 109.47719 * 59.29613 * 9 8 7 39 39 H 1.08999 * 109.47253 * 179.29985 * 9 8 7 40 40 H 1.09001 * 109.46884 * 299.29546 * 9 8 7 41 41 H 1.08996 * 110.34416 * 0.02562 * 10 8 7 42 42 H 1.09005 * 110.34400 * 122.26233 * 10 8 7 43 43 H 1.08999 * 110.40597 * 142.65200 * 11 10 8 44 44 H 1.09004 * 110.40937 * 264.96641 * 11 10 8 45 45 H 1.09005 * 109.47062 * 299.99658 * 15 13 12 46 46 H 1.09000 * 109.47101 * 59.99798 * 15 13 12 47 47 H 0.97006 * 120.00028 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.45139 * 280.87503 * 25 12 11 49 49 H 1.08998 * 110.49348 * 158.35866 * 25 12 11 50 50 H 1.09008 * 109.46858 * 65.64348 * 27 26 3 51 51 H 1.08994 * 109.47706 * 185.64638 * 27 26 3 52 52 H 1.09007 * 109.46859 * 305.65127 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9819 -0.8409 5 6 3.5647 1.4444 -0.1279 6 7 4.0543 2.8294 -0.1272 7 6 5.5177 2.8703 -0.2494 8 6 5.9892 4.3259 -0.2458 9 6 5.3549 5.0924 -1.4081 10 6 7.5279 4.3915 -0.3361 11 6 7.9736 5.0993 0.9616 12 7 6.8668 4.8602 1.9169 13 6 6.9561 4.5788 3.2320 14 8 5.9487 4.4083 3.8853 15 6 8.3077 4.4760 3.8905 16 16 8.0957 4.0899 5.6461 17 6 9.7824 4.0293 6.1519 18 1 10.5685 4.2072 5.4331 19 6 10.1008 3.7528 7.4743 20 7 9.1427 3.5355 8.3504 21 14 11.8891 3.6878 8.0105 22 1 12.5308 5.0022 7.7542 23 1 11.9600 3.3761 9.4607 24 1 12.5980 2.6328 7.2426 25 6 5.6373 5.0007 1.0976 26 8 1.6636 2.0808 1.2219 27 6 0.5241 2.9350 1.1044 28 1 -0.3633 -1.0225 -0.1036 29 1 -0.3634 0.4214 0.9373 30 1 -0.3634 0.6009 -0.8336 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.0004 0.9050 0.7131 34 1 3.8517 0.9575 -1.0598 35 1 3.7461 3.3216 0.6979 36 1 5.9673 2.3404 0.5902 37 1 5.8179 2.3939 -1.1826 38 1 4.2694 5.0591 -1.3160 39 1 5.6899 6.1294 -1.3853 40 1 5.6538 4.6347 -2.3511 41 1 7.9479 3.3868 -0.3835 42 1 7.8320 4.9714 -1.2076 43 1 8.8993 4.6611 1.3349 44 1 8.1031 6.1674 0.7868 45 1 8.8857 3.6852 3.4122 46 1 8.8349 5.4245 3.7878 47 1 9.3653 3.3427 9.2746 48 1 5.4005 6.0534 0.9436 49 1 4.8013 4.4878 1.5730 50 1 -0.3554 2.3367 0.8661 51 1 0.3632 3.4579 2.0471 52 1 0.6952 3.6618 0.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569660457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:48 Heat of formation + Delta-G solvation = -113.111897 kcal Electronic energy + Delta-G solvation = -28628.126044 eV Core-core repulsion = 24752.555705 eV Total energy + Delta-G solvation = -3875.570339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26972 -39.79285 -39.11541 -36.50415 -34.61418 -34.51522 -33.61331 -31.07509 -30.65425 -29.53754 -27.77551 -27.34488 -26.81816 -26.00770 -24.12322 -23.10460 -22.05565 -20.76669 -20.02293 -19.50153 -18.17882 -17.92769 -17.32338 -16.90914 -16.86193 -16.60637 -16.41186 -15.86860 -15.74578 -15.53613 -15.37151 -15.18366 -14.68202 -14.56580 -14.42222 -14.05335 -13.74127 -13.51535 -13.48003 -13.40351 -13.20205 -13.13244 -13.00165 -12.93027 -12.87812 -12.67405 -12.64541 -12.40742 -12.17259 -12.06147 -11.84638 -11.68223 -11.59685 -11.49379 -11.41086 -11.15059 -10.97116 -10.39429 -10.31833 -9.79508 -9.44140 -8.71558 -8.36574 -6.16211 1.20964 1.42662 1.42779 1.53484 1.53866 2.06434 2.25311 2.89181 2.97241 3.05630 3.21689 3.47691 3.64847 3.83491 3.89124 3.92273 4.08386 4.11993 4.19660 4.28287 4.32141 4.34638 4.39104 4.40015 4.46467 4.54151 4.55063 4.59442 4.64993 4.73811 4.75904 4.80156 4.84525 4.85341 4.88901 4.97510 4.97636 5.05740 5.06602 5.18958 5.24240 5.31330 5.36608 5.38241 5.38722 5.59916 5.98337 6.17198 6.27305 6.34302 6.43261 7.03850 7.09156 8.72623 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.002418 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.881495 B =11574.875685 C =13037.995709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.092 3.908 4 H 0.082 0.918 5 C 0.056 3.944 6 N -0.680 5.680 7 C 0.075 3.925 8 C -0.062 4.062 9 C -0.118 4.118 10 C -0.117 4.117 11 C 0.091 3.909 12 N -0.624 5.624 13 C 0.549 3.451 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.153 6.153 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.109 3.891 26 O -0.411 6.411 27 C 0.026 3.974 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.012 0.988 34 H 0.102 0.898 35 H 0.337 0.663 36 H 0.001 0.999 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.272 0.728 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.079 0.921 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 -0.511 -28.468 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.034 3.966 4 H 0.100 0.900 5 C -0.073 4.073 6 N -0.311 5.311 7 C -0.055 4.055 8 C -0.064 4.064 9 C -0.175 4.175 10 C -0.155 4.155 11 C -0.031 4.031 12 N -0.358 5.358 13 C 0.337 3.663 14 O -0.449 6.449 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.013 4.013 26 O -0.330 6.330 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.019 0.981 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.097 0.903 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.057 -0.763 -27.733 30.250 hybrid contribution 1.918 -0.297 1.180 2.271 sum -10.139 -1.060 -26.553 28.443 Atomic orbital electron populations 1.21800 0.94796 1.02445 1.01746 1.21969 0.97233 0.95994 1.02776 1.22324 0.93756 0.93502 0.87020 0.90033 1.22202 0.94188 0.89962 1.00980 1.60660 1.10412 1.14239 1.45800 1.22009 0.87456 0.95678 1.00312 1.21486 0.95955 0.94609 0.94320 1.21658 1.01053 0.99088 0.95745 1.22675 0.93310 1.02104 0.97457 1.22749 0.89903 1.02034 0.88439 1.49036 1.10698 1.69585 1.06509 1.19749 0.90138 0.75508 0.80891 1.90690 1.39082 1.51522 1.63616 1.23278 0.97502 1.06003 1.00094 1.85624 1.12715 1.92573 1.01636 1.23148 0.91711 1.56289 0.98259 0.89878 1.26179 1.04036 0.93669 0.95357 1.70188 1.34994 1.45649 1.03996 0.84973 0.76093 0.79496 0.77240 1.18483 1.20316 1.18583 1.22658 0.87151 1.01162 0.90370 1.87908 1.48763 1.62814 1.33548 1.22993 0.87956 0.93351 1.02657 0.91774 0.93310 0.91757 0.89293 0.92838 0.96998 0.88030 0.84417 0.98051 0.88885 0.92082 0.91740 0.90998 0.90651 0.86709 0.89909 0.88799 0.87827 0.87540 0.91936 0.89713 0.92757 0.92651 0.90274 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.86 71.98 0.64 -1.35 16 2 C -0.14 -2.18 5.64 30.59 0.17 -2.00 16 3 C 0.09 1.63 2.54 30.59 0.08 1.71 16 4 H 0.08 1.24 7.60 -2.39 -0.02 1.22 16 5 C 0.06 1.08 5.42 86.30 0.47 1.55 16 6 N -0.68 -13.61 5.76 -513.87 -2.96 -16.57 16 7 C 0.07 1.43 4.47 86.30 0.39 1.82 16 8 C -0.06 -1.03 0.82 -51.27 -0.04 -1.07 16 9 C -0.12 -1.40 8.08 71.98 0.58 -0.82 16 10 C -0.12 -1.60 6.30 31.50 0.20 -1.40 16 11 C 0.09 1.73 6.92 86.54 0.60 2.32 16 12 N -0.62 -18.27 3.32 -807.24 -2.68 -20.96 16 13 C 0.55 22.56 7.93 87.66 0.70 23.26 16 14 O -0.57 -29.02 16.14 -3.03 -0.05 -29.07 16 15 C -0.12 -5.02 5.13 71.23 0.37 -4.66 16 16 S -0.15 -8.85 20.57 -56.49 -1.16 -10.01 16 17 C -0.55 -31.94 9.50 67.95 0.65 -31.29 16 18 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.71 5.49 84.86 0.47 1.18 16 20 N -0.91 -57.17 13.22 21.65 0.29 -56.88 16 21 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 C 0.11 2.64 6.02 86.48 0.52 3.16 16 26 O -0.41 -9.58 9.47 -148.98 -1.41 -10.99 16 27 C 0.03 0.46 10.48 113.37 1.19 1.64 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.75 6.58 -2.39 -0.02 0.74 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.34 8.34 6.14 -89.69 -0.55 7.79 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 0.85 7.62 -2.39 -0.02 0.84 16 39 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 1.06 7.71 -2.39 -0.02 1.04 16 42 H 0.11 0.91 7.71 -2.38 -0.02 0.89 16 43 H 0.08 1.58 7.30 -2.39 -0.02 1.57 16 44 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.10 4.05 7.95 -2.39 -0.02 4.03 16 46 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 47 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 48 H 0.08 1.81 7.85 -2.39 -0.02 1.79 16 49 H 0.05 1.62 5.85 -2.39 -0.01 1.61 16 50 H 0.06 0.78 6.00 -2.38 -0.01 0.76 16 51 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 52 H 0.05 0.79 7.99 -2.38 -0.02 0.77 16 Total: -1.00 -79.90 421.23 1.35 -78.56 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.33 Total: 25.69 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.96 Total: -5.96 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.35 Total: -94.41 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.46 Total: -40.06 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -79.90 1.35 -78.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569660457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.555 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds