Wall clock time and date at job start Wed Apr 1 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.09007 * 109.46862 * 54.44261 * 3 2 1 5 5 C 1.52998 * 109.47046 * 174.43711 * 3 2 1 6 6 N 1.46902 * 109.47033 * 185.00136 * 5 3 2 7 7 C 1.46901 * 111.00344 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47386 * 179.97438 * 7 6 5 9 9 C 1.52998 * 110.30951 * 300.70316 * 8 7 6 10 10 C 1.54287 * 110.34335 * 178.52342 * 8 7 6 11 11 C 1.54389 * 104.96178 * 241.02445 * 10 8 7 12 12 N 1.48151 * 104.61784 * 23.86683 * 11 10 8 13 13 C 1.34773 * 127.83646 * 140.41694 * 12 11 10 14 14 O 1.21287 * 119.99757 * 180.02562 * 13 12 11 15 15 C 1.50702 * 120.00210 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47022 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99840 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00500 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46888 * 59.99986 * 21 19 17 23 23 H 1.48498 * 109.46870 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47203 * 300.00148 * 21 19 17 25 25 C 1.48309 * 104.39228 * 320.47204 * 12 11 10 26 26 O 1.42893 * 109.47118 * 294.43895 * 3 2 1 27 27 C 1.42902 * 114.00190 * 118.48470 * 26 3 2 28 28 H 1.09001 * 109.47428 * 298.40486 * 1 2 3 29 29 H 1.09003 * 109.47171 * 58.39953 * 1 2 3 30 30 H 1.08998 * 109.47754 * 178.39746 * 1 2 3 31 31 H 1.09002 * 109.47718 * 239.99906 * 2 1 3 32 32 H 1.08999 * 109.47202 * 119.99877 * 2 1 3 33 33 H 1.09002 * 109.47338 * 65.00639 * 5 3 2 34 34 H 1.08997 * 109.47600 * 305.00214 * 5 3 2 35 35 H 1.00900 * 111.00220 * 56.04937 * 6 5 3 36 36 H 1.09003 * 109.47065 * 59.99334 * 7 6 5 37 37 H 1.08997 * 109.46877 * 300.00124 * 7 6 5 38 38 H 1.09004 * 109.47218 * 59.29382 * 9 8 7 39 39 H 1.08994 * 109.47454 * 179.29920 * 9 8 7 40 40 H 1.08999 * 109.46859 * 299.29890 * 9 8 7 41 41 H 1.09003 * 110.34031 * 359.89581 * 10 8 7 42 42 H 1.09000 * 110.34398 * 122.15635 * 10 8 7 43 43 H 1.09001 * 110.40480 * 142.64954 * 11 10 8 44 44 H 1.08997 * 110.41134 * 264.96519 * 11 10 8 45 45 H 1.08992 * 109.47393 * 300.00227 * 15 13 12 46 46 H 1.09001 * 109.46838 * 60.00699 * 15 13 12 47 47 H 0.96992 * 119.99956 * 180.02562 * 20 19 17 48 48 H 1.08997 * 110.38558 * 280.73385 * 25 12 11 49 49 H 1.08998 * 110.51067 * 158.24865 * 25 12 11 50 50 H 1.08998 * 109.47468 * 186.34902 * 27 26 3 51 51 H 1.09001 * 109.46800 * 306.35260 * 27 26 3 52 52 H 1.09006 * 109.47203 * 66.34818 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 0.8361 5 6 3.5636 1.4447 0.1398 6 7 4.0422 2.8283 0.2602 7 6 5.5044 2.8697 0.3959 8 6 5.9643 4.3237 0.5178 9 6 5.5404 5.1202 -0.7178 10 6 7.4952 4.3887 0.6986 11 6 7.7062 5.0656 2.0701 12 7 6.4504 4.8065 2.8121 13 6 6.3097 4.4952 4.1158 14 8 5.2042 4.3105 4.5793 15 6 7.5259 4.3767 4.9978 16 16 7.0118 3.9525 6.6806 17 6 8.5845 3.8806 7.4719 18 1 9.4834 4.0749 6.9057 19 6 8.6682 3.5743 8.8232 20 7 7.5726 3.3370 9.5133 21 14 10.3354 3.4974 9.6620 22 1 11.0066 4.8174 9.5512 23 1 10.1531 3.1541 11.0952 24 1 11.1719 2.4602 9.0066 25 6 5.3821 4.9655 1.7957 26 8 1.6733 2.0774 -1.2265 27 6 0.8159 3.2087 -1.0618 28 1 -0.3634 0.4889 0.9039 29 1 -0.3634 0.5385 -0.8753 30 1 -0.3634 -1.0272 -0.0287 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0099 0.9811 -0.7400 34 1 3.8476 0.8833 1.0299 35 1 3.5938 3.3004 1.0310 36 1 5.9638 2.4160 -0.4823 37 1 5.8022 2.3180 1.2876 38 1 4.4554 5.0866 -0.8172 39 1 5.8637 6.1556 -0.6113 40 1 6.0001 4.6856 -1.6055 41 1 7.9192 3.3845 0.7024 42 1 7.9452 4.9879 -0.0929 43 1 8.5536 4.6173 2.5888 44 1 7.8617 6.1372 1.9451 45 1 8.1813 3.5969 4.6102 46 1 8.0597 5.3270 5.0101 47 1 7.6310 3.1233 10.4576 48 1 5.1715 6.0218 1.6284 49 1 4.4783 4.4414 2.1063 50 1 0.4929 3.5653 -2.0398 51 1 -0.0558 2.9213 -0.4737 52 1 1.3565 4.0023 -0.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569660459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:59 Heat of formation + Delta-G solvation = -89.580874 kcal Electronic energy + Delta-G solvation = -28528.478704 eV Core-core repulsion = 24653.928747 eV Total energy + Delta-G solvation = -3874.549957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19333 -38.86824 -37.88421 -35.60258 -33.78143 -32.71638 -32.44438 -29.78550 -29.55275 -28.67950 -26.68555 -26.03078 -25.48304 -25.05911 -23.32095 -22.35317 -21.36473 -19.33984 -19.16021 -17.68683 -17.23100 -16.73409 -16.22219 -15.85044 -15.55906 -15.15598 -15.00461 -14.81896 -14.64524 -14.48448 -14.17369 -14.00239 -13.91029 -13.45677 -13.28262 -13.07640 -12.87302 -12.64476 -12.49810 -12.33820 -12.27386 -12.15111 -11.83336 -11.79689 -11.73502 -11.50028 -11.30708 -11.06383 -11.05364 -10.96762 -10.91128 -10.79390 -10.75709 -10.70613 -9.83945 -9.64709 -9.41975 -9.07648 -8.63957 -8.52870 -8.26059 -6.52443 -6.23253 -3.94188 2.89272 3.03942 3.22059 3.24577 3.27878 3.59170 3.60027 3.81287 4.18537 4.31809 4.46642 4.58118 4.60962 4.77866 4.82178 4.99885 5.02936 5.06206 5.09876 5.11776 5.12428 5.14782 5.26924 5.29063 5.32041 5.41377 5.47385 5.51182 5.52749 5.56303 5.58141 5.61774 5.67697 5.68022 5.68890 5.75079 5.78988 5.79446 5.89549 5.98047 6.00084 6.01480 6.11576 6.15944 6.39268 6.76893 7.03019 7.16893 7.57469 7.72014 8.33297 8.54114 9.21793 10.84165 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002294 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.534228 B =12205.455139 C =13600.366205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.093 3.907 4 H 0.062 0.938 5 C 0.049 3.951 6 N -0.682 5.682 7 C 0.074 3.926 8 C -0.072 4.072 9 C -0.125 4.125 10 C -0.126 4.126 11 C 0.101 3.899 12 N -0.630 5.630 13 C 0.554 3.446 14 O -0.519 6.519 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.115 3.885 26 O -0.371 6.371 27 C 0.035 3.965 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.338 0.662 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.269 0.731 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.035 0.965 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -0.438 -24.906 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.034 3.966 4 H 0.080 0.920 5 C -0.081 4.081 6 N -0.314 5.314 7 C -0.055 4.055 8 C -0.074 4.074 9 C -0.183 4.183 10 C -0.165 4.165 11 C -0.023 4.023 12 N -0.367 5.367 13 C 0.343 3.657 14 O -0.393 6.393 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.008 4.008 26 O -0.290 6.290 27 C -0.062 4.062 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.054 0.946 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.112 -0.752 -24.748 26.383 hybrid contribution 2.459 -0.018 1.201 2.737 sum -6.653 -0.771 -23.546 24.480 Atomic orbital electron populations 1.21732 0.95423 1.01822 1.01862 1.21828 0.96634 0.96004 1.02823 1.22166 0.93710 0.93362 0.87351 0.91993 1.22292 0.94736 0.89946 1.01099 1.60507 1.05624 1.15503 1.49729 1.21966 0.88018 0.95143 1.00364 1.21522 0.94925 0.95402 0.95520 1.21706 1.02635 0.98314 0.95647 1.22656 0.95067 1.01763 0.97005 1.22350 0.87928 1.00196 0.91776 1.49060 1.08290 1.71315 1.08058 1.19992 0.90952 0.75122 0.79683 1.90702 1.27193 1.48919 1.72489 1.23498 0.98407 1.04871 1.02910 1.85385 1.12076 1.90922 0.95019 1.22815 0.92761 1.55560 0.97224 0.90993 1.24998 0.97787 0.94542 0.96250 1.70008 1.27405 1.44126 1.08765 0.86220 0.82326 0.78739 0.78197 1.19913 1.20788 1.19930 1.22386 0.91798 1.00278 0.86387 1.87895 1.67627 1.44246 1.29211 1.22772 0.92806 0.88641 1.01959 0.92955 0.92280 0.92583 0.91009 0.90892 0.90201 0.94091 0.84317 0.90733 0.94866 0.91195 0.93063 0.92561 0.90812 0.90018 0.90032 0.91136 0.89401 0.89317 0.92112 0.91203 0.90453 0.90219 0.94614 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.83 37.15 0.37 -0.75 16 2 C -0.13 -1.07 5.64 -26.73 -0.15 -1.22 16 3 C 0.09 0.83 2.41 -26.73 -0.06 0.76 16 4 H 0.06 0.56 7.60 -51.92 -0.39 0.16 16 5 C 0.05 0.46 5.35 -3.82 -0.02 0.44 16 6 N -0.68 -6.63 5.70 -113.78 -0.65 -7.28 16 7 C 0.07 0.73 4.47 -3.83 -0.02 0.71 16 8 C -0.07 -0.66 0.82 -153.11 -0.13 -0.79 16 9 C -0.13 -0.98 8.08 37.16 0.30 -0.68 16 10 C -0.13 -1.07 6.30 -25.33 -0.16 -1.23 16 11 C 0.10 1.07 6.92 -2.41 -0.02 1.06 16 12 N -0.63 -9.09 3.32 -169.16 -0.56 -9.65 16 13 C 0.55 10.76 7.93 -10.99 -0.09 10.67 16 14 O -0.52 -12.03 16.13 5.55 0.09 -11.94 16 15 C -0.15 -3.03 5.14 36.01 0.18 -2.84 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.42 -0.10 2.01 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.11 1.36 6.02 -2.31 -0.01 1.35 16 26 O -0.37 -3.68 9.82 -35.23 -0.35 -4.03 16 27 C 0.03 0.27 10.71 101.05 1.08 1.36 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 7.80 -51.93 -0.40 0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 3.50 6.76 -39.29 -0.27 3.24 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 39 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 42 H 0.08 0.55 7.71 -51.93 -0.40 0.15 16 43 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 46 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 49 H 0.08 1.02 5.84 -51.93 -0.30 0.72 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 52 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 426.61 15.07 6.43 6.43 Total: -1.00 -33.86 426.61 -9.71 -43.57 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.65 Total: 0.04 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 1.48 Total: -4.16 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.48 Total: -42.41 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.26 Total: -15.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.86 -9.71 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569660459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.011 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds