Wall clock time and date at job start Wed Apr 1 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.09007 * 109.46862 * 54.44261 * 3 2 1 5 5 C 1.52998 * 109.47046 * 174.43711 * 3 2 1 6 6 N 1.46902 * 109.47033 * 185.00136 * 5 3 2 7 7 C 1.46901 * 111.00344 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47386 * 179.97438 * 7 6 5 9 9 C 1.52998 * 110.30951 * 300.70316 * 8 7 6 10 10 C 1.54287 * 110.34335 * 178.52342 * 8 7 6 11 11 C 1.54389 * 104.96178 * 241.02445 * 10 8 7 12 12 N 1.48151 * 104.61784 * 23.86683 * 11 10 8 13 13 C 1.34773 * 127.83646 * 140.41694 * 12 11 10 14 14 O 1.21287 * 119.99757 * 180.02562 * 13 12 11 15 15 C 1.50702 * 120.00210 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47022 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99840 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00500 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46888 * 59.99986 * 21 19 17 23 23 H 1.48498 * 109.46870 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47203 * 300.00148 * 21 19 17 25 25 C 1.48309 * 104.39228 * 320.47204 * 12 11 10 26 26 O 1.42893 * 109.47118 * 294.43895 * 3 2 1 27 27 C 1.42902 * 114.00190 * 118.48470 * 26 3 2 28 28 H 1.09001 * 109.47428 * 298.40486 * 1 2 3 29 29 H 1.09003 * 109.47171 * 58.39953 * 1 2 3 30 30 H 1.08998 * 109.47754 * 178.39746 * 1 2 3 31 31 H 1.09002 * 109.47718 * 239.99906 * 2 1 3 32 32 H 1.08999 * 109.47202 * 119.99877 * 2 1 3 33 33 H 1.09002 * 109.47338 * 65.00639 * 5 3 2 34 34 H 1.08997 * 109.47600 * 305.00214 * 5 3 2 35 35 H 1.00900 * 111.00220 * 56.04937 * 6 5 3 36 36 H 1.09003 * 109.47065 * 59.99334 * 7 6 5 37 37 H 1.08997 * 109.46877 * 300.00124 * 7 6 5 38 38 H 1.09004 * 109.47218 * 59.29382 * 9 8 7 39 39 H 1.08994 * 109.47454 * 179.29920 * 9 8 7 40 40 H 1.08999 * 109.46859 * 299.29890 * 9 8 7 41 41 H 1.09003 * 110.34031 * 359.89581 * 10 8 7 42 42 H 1.09000 * 110.34398 * 122.15635 * 10 8 7 43 43 H 1.09001 * 110.40480 * 142.64954 * 11 10 8 44 44 H 1.08997 * 110.41134 * 264.96519 * 11 10 8 45 45 H 1.08992 * 109.47393 * 300.00227 * 15 13 12 46 46 H 1.09001 * 109.46838 * 60.00699 * 15 13 12 47 47 H 0.96992 * 119.99956 * 180.02562 * 20 19 17 48 48 H 1.08997 * 110.38558 * 280.73385 * 25 12 11 49 49 H 1.08998 * 110.51067 * 158.24865 * 25 12 11 50 50 H 1.08998 * 109.47468 * 186.34902 * 27 26 3 51 51 H 1.09001 * 109.46800 * 306.35260 * 27 26 3 52 52 H 1.09006 * 109.47203 * 66.34818 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 0.8361 5 6 3.5636 1.4447 0.1398 6 7 4.0422 2.8283 0.2602 7 6 5.5044 2.8697 0.3959 8 6 5.9643 4.3237 0.5178 9 6 5.5404 5.1202 -0.7178 10 6 7.4952 4.3887 0.6986 11 6 7.7062 5.0656 2.0701 12 7 6.4504 4.8065 2.8121 13 6 6.3097 4.4952 4.1158 14 8 5.2042 4.3105 4.5793 15 6 7.5259 4.3767 4.9978 16 16 7.0118 3.9525 6.6806 17 6 8.5845 3.8806 7.4719 18 1 9.4834 4.0749 6.9057 19 6 8.6682 3.5743 8.8232 20 7 7.5726 3.3370 9.5133 21 14 10.3354 3.4974 9.6620 22 1 11.0066 4.8174 9.5512 23 1 10.1531 3.1541 11.0952 24 1 11.1719 2.4602 9.0066 25 6 5.3821 4.9655 1.7957 26 8 1.6733 2.0774 -1.2265 27 6 0.8159 3.2087 -1.0618 28 1 -0.3634 0.4889 0.9039 29 1 -0.3634 0.5385 -0.8753 30 1 -0.3634 -1.0272 -0.0287 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0099 0.9811 -0.7400 34 1 3.8476 0.8833 1.0299 35 1 3.5938 3.3004 1.0310 36 1 5.9638 2.4160 -0.4823 37 1 5.8022 2.3180 1.2876 38 1 4.4554 5.0866 -0.8172 39 1 5.8637 6.1556 -0.6113 40 1 6.0001 4.6856 -1.6055 41 1 7.9192 3.3845 0.7024 42 1 7.9452 4.9879 -0.0929 43 1 8.5536 4.6173 2.5888 44 1 7.8617 6.1372 1.9451 45 1 8.1813 3.5969 4.6102 46 1 8.0597 5.3270 5.0101 47 1 7.6310 3.1233 10.4576 48 1 5.1715 6.0218 1.6284 49 1 4.4783 4.4414 2.1063 50 1 0.4929 3.5653 -2.0398 51 1 -0.0558 2.9213 -0.4737 52 1 1.3565 4.0023 -0.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569660459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:58 Heat of formation + Delta-G solvation = -111.988090 kcal Electronic energy + Delta-G solvation = -28529.450354 eV Core-core repulsion = 24653.928747 eV Total energy + Delta-G solvation = -3875.521607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28144 -39.70843 -39.08085 -36.51410 -34.61551 -34.56401 -33.62721 -31.06862 -30.63829 -29.40980 -27.77330 -27.35928 -26.83461 -25.98348 -24.13847 -23.17563 -22.06876 -20.76633 -20.02976 -19.50193 -18.19859 -17.89189 -17.24195 -16.90636 -16.76254 -16.53922 -16.40421 -15.88577 -15.74244 -15.50634 -15.33659 -15.13436 -14.72041 -14.55100 -14.41106 -14.09506 -13.82416 -13.73234 -13.50174 -13.33794 -13.19850 -13.14508 -12.98373 -12.93630 -12.87982 -12.64827 -12.53571 -12.42793 -12.16649 -11.97072 -11.84845 -11.67340 -11.61158 -11.51933 -11.45952 -11.15053 -10.97493 -10.35820 -10.32127 -9.79836 -9.40141 -8.71124 -8.36833 -6.16013 1.21117 1.42572 1.42869 1.53212 1.53466 2.06276 2.25266 2.90606 2.97146 3.02971 3.21300 3.47063 3.64180 3.82921 3.86651 3.88900 4.07910 4.13297 4.19924 4.27258 4.31227 4.34732 4.38109 4.40914 4.51034 4.52195 4.55543 4.61608 4.67254 4.71124 4.76256 4.82472 4.84488 4.88546 4.91324 4.96611 4.99400 5.05118 5.07485 5.15825 5.23156 5.30757 5.36469 5.37627 5.38890 5.59287 5.96990 6.17179 6.25385 6.39580 6.42351 7.03948 7.08280 8.72286 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002294 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.534228 B =12205.455139 C =13600.366205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.095 3.905 4 H 0.057 0.943 5 C 0.050 3.950 6 N -0.678 5.678 7 C 0.077 3.923 8 C -0.062 4.062 9 C -0.118 4.118 10 C -0.118 4.118 11 C 0.091 3.909 12 N -0.623 5.623 13 C 0.550 3.450 14 O -0.569 6.569 15 C -0.119 4.119 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.110 3.890 26 O -0.386 6.386 27 C 0.033 3.967 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.332 0.668 36 H 0.086 0.914 37 H 0.007 0.993 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.272 0.728 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.092 0.908 51 H 0.041 0.959 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 0.303 -27.163 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.037 3.963 4 H 0.076 0.924 5 C -0.079 4.079 6 N -0.309 5.309 7 C -0.052 4.052 8 C -0.063 4.063 9 C -0.175 4.175 10 C -0.156 4.156 11 C -0.030 4.030 12 N -0.357 5.357 13 C 0.339 3.661 14 O -0.448 6.448 15 C -0.270 4.270 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.012 4.012 26 O -0.304 6.304 27 C -0.064 4.064 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.110 0.890 51 H 0.060 0.940 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.042 0.006 -27.079 27.979 hybrid contribution 1.776 -0.210 1.747 2.500 sum -5.266 -0.204 -25.331 25.874 Atomic orbital electron populations 1.21711 0.94874 1.02328 1.01677 1.21823 0.97112 0.95331 1.02913 1.22148 0.93260 0.93887 0.87045 0.92440 1.22285 0.95248 0.89710 1.00668 1.60567 1.05592 1.15546 1.49215 1.21970 0.88083 0.95550 0.99595 1.21471 0.95437 0.94731 0.94678 1.21646 1.02156 0.98799 0.94913 1.22671 0.94255 1.02280 0.96413 1.22732 0.86038 1.01970 0.92297 1.49006 1.11057 1.68888 1.06793 1.19712 0.89625 0.75512 0.81253 1.90679 1.28515 1.51698 1.73956 1.23286 0.99272 1.05943 0.98509 1.85572 1.14211 1.91627 1.00905 1.23150 0.92774 1.55630 0.97877 0.89933 1.26157 1.02333 0.93701 0.96973 1.70178 1.30229 1.45195 1.09171 0.84991 0.76642 0.79449 0.76842 1.18563 1.20333 1.18597 1.22627 0.90698 1.01228 0.86668 1.87865 1.68103 1.44899 1.29583 1.22869 0.92698 0.87991 1.02826 0.93033 0.92536 0.91742 0.90982 0.90704 0.90131 0.94910 0.84919 0.89603 0.97458 0.92098 0.91740 0.91498 0.90668 0.86967 0.89872 0.88862 0.87810 0.87640 0.91936 0.89746 0.92335 0.88979 0.93989 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.83 71.98 0.71 -1.42 16 2 C -0.13 -2.10 5.64 30.59 0.17 -1.93 16 3 C 0.10 1.70 2.41 30.59 0.07 1.78 16 4 H 0.06 1.07 7.60 -2.38 -0.02 1.05 16 5 C 0.05 0.95 5.35 86.30 0.46 1.42 16 6 N -0.68 -13.03 5.70 -513.90 -2.93 -15.96 16 7 C 0.08 1.44 4.47 86.30 0.39 1.83 16 8 C -0.06 -1.00 0.82 -51.27 -0.04 -1.04 16 9 C -0.12 -1.48 8.08 71.98 0.58 -0.89 16 10 C -0.12 -1.59 6.30 31.50 0.20 -1.39 16 11 C 0.09 1.68 6.92 86.53 0.60 2.28 16 12 N -0.62 -17.32 3.32 -807.50 -2.68 -20.00 16 13 C 0.55 21.63 7.93 87.66 0.70 22.33 16 14 O -0.57 -27.57 16.13 -3.05 -0.05 -27.62 16 15 C -0.12 -4.92 5.14 71.24 0.37 -4.56 16 16 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 17 C -0.55 -31.46 9.50 67.96 0.65 -30.81 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C 0.11 2.49 6.02 86.51 0.52 3.01 16 26 O -0.39 -7.43 9.82 -148.98 -1.46 -8.89 16 27 C 0.03 0.49 10.71 113.37 1.21 1.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.83 7.80 -2.39 -0.02 0.81 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.33 7.07 6.76 -89.69 -0.61 6.47 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 0.91 7.62 -2.39 -0.02 0.89 16 39 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.05 7.71 -2.39 -0.02 1.03 16 42 H 0.11 0.93 7.71 -2.39 -0.02 0.91 16 43 H 0.08 1.53 7.30 -2.39 -0.02 1.51 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.10 3.92 7.95 -2.40 -0.02 3.91 16 46 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.08 1.70 7.85 -2.39 -0.02 1.68 16 49 H 0.06 1.57 5.84 -2.39 -0.01 1.56 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.04 0.57 8.12 -2.39 -0.02 0.55 16 52 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -76.24 426.61 1.34 -74.90 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.27 Total: 24.13 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 7.05 Total: -6.48 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -5.32 Total: -91.98 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.51 Total: -36.51 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -76.24 1.34 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569660459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.092 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds