Wall clock time and date at job start Wed Apr 1 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.08996 * 109.46720 * 304.99761 * 3 2 1 5 5 C 1.53007 * 109.47192 * 64.99523 * 3 2 1 6 6 C 1.52998 * 109.47361 * 184.99662 * 3 2 1 7 7 N 1.46903 * 109.47194 * 174.99822 * 6 3 2 8 8 C 1.46897 * 110.99880 * 180.02562 * 7 6 3 9 9 C 1.53004 * 109.46757 * 180.02562 * 8 7 6 10 10 O 1.42897 * 109.46003 * 65.02687 * 9 8 7 11 11 C 1.53042 * 109.45537 * 184.99958 * 9 8 7 12 12 C 1.53201 * 109.30946 * 181.36992 * 11 9 8 13 13 N 1.46920 * 108.77364 * 305.36286 * 12 11 9 14 14 C 1.34777 * 120.63268 * 233.58247 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00092 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47405 * 90.00153 * 22 20 18 24 24 H 1.48505 * 109.47032 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47409 * 329.99921 * 22 20 18 26 26 C 1.46927 * 118.74032 * 53.86485 * 13 12 11 27 27 C 1.53040 * 109.44792 * 305.05826 * 9 8 7 28 28 H 1.09003 * 109.46679 * 60.00157 * 1 2 3 29 29 H 1.09006 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47651 * 300.00330 * 1 2 3 31 31 H 1.08996 * 109.47651 * 239.99670 * 2 1 3 32 32 H 1.09007 * 109.47081 * 119.99532 * 2 1 3 33 33 H 1.09004 * 109.46594 * 59.99785 * 5 3 2 34 34 H 1.08994 * 109.47193 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46790 * 300.00380 * 5 3 2 36 36 H 1.09000 * 109.46923 * 54.99560 * 6 3 2 37 37 H 1.09003 * 109.47169 * 295.00101 * 6 3 2 38 38 H 1.00902 * 110.99616 * 56.04801 * 7 6 3 39 39 H 1.08999 * 109.47311 * 60.00294 * 8 7 6 40 40 H 1.09005 * 109.47020 * 299.99450 * 8 7 6 41 41 H 0.96697 * 114.00149 * 299.96731 * 10 9 8 42 42 H 1.09000 * 109.50220 * 61.42353 * 11 9 8 43 43 H 1.09000 * 109.50009 * 301.31531 * 11 9 8 44 44 H 1.09001 * 109.58322 * 185.57561 * 12 11 9 45 45 H 1.08997 * 109.58549 * 65.15220 * 12 11 9 46 46 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 47 47 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 48 48 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.58858 * 65.92197 * 26 13 12 50 50 H 1.08995 * 109.58867 * 186.34993 * 26 13 12 51 51 H 1.08999 * 109.49509 * 298.57501 * 27 9 8 52 52 H 1.09002 * 109.49899 * 58.67183 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1256 7 7 4.0446 2.8276 -0.2461 8 6 5.5078 2.8684 -0.3695 9 6 5.9689 4.3221 -0.4919 10 8 5.6725 5.0192 0.7198 11 6 7.4777 4.3588 -0.7453 12 6 7.9414 5.8163 -0.8332 13 7 7.1412 6.5063 -1.8539 14 6 7.7397 7.1727 -2.8611 15 8 8.9500 7.2063 -2.9311 16 6 6.9050 7.8760 -3.9001 17 16 7.9916 8.6714 -5.1097 18 6 6.7876 9.3959 -6.1728 19 1 5.7357 9.2687 -5.9632 20 6 7.1910 10.1308 -7.2789 21 7 8.4729 10.2870 -7.5335 22 14 5.9145 10.8995 -8.4055 23 1 5.5901 12.2669 -7.9258 24 1 6.4546 10.9747 -9.7868 25 1 4.6842 10.0680 -8.3996 26 6 5.6761 6.4615 -1.7525 27 6 5.2377 4.9922 -1.6575 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0697 1.5875 2.1492 34 1 1.9981 3.1544 1.3072 35 1 0.5488 2.1253 1.3968 36 1 3.8571 0.8799 -1.0112 37 1 4.0029 0.9836 0.7598 38 1 3.7313 3.3880 0.5323 39 1 5.8132 2.3141 -1.2570 40 1 5.9597 2.4174 0.5140 41 1 4.7320 5.0363 0.9438 42 1 7.7019 3.8487 -1.6821 43 1 7.9964 3.8608 0.0739 44 1 8.9949 5.8484 -1.1113 45 1 7.8012 6.3031 0.1319 46 1 6.2840 8.6307 -3.4175 47 1 6.2678 7.1507 -4.4062 48 1 8.7548 10.8004 -8.3068 49 1 5.3549 7.0000 -0.8609 50 1 5.2344 6.9195 -2.6375 51 1 5.4829 4.4760 -2.5857 52 1 4.1621 4.9450 -1.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674061412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:54 Heat of formation + Delta-G solvation = -104.992909 kcal Electronic energy + Delta-G solvation = -28338.587752 eV Core-core repulsion = 24463.369479 eV Total energy + Delta-G solvation = -3875.218273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34528 -38.77124 -37.74320 -35.49460 -34.55485 -32.40371 -32.27917 -31.27368 -30.08652 -29.02108 -27.40530 -25.91449 -25.42313 -23.50013 -23.31935 -22.30430 -20.76472 -20.32490 -19.07759 -17.69284 -17.25439 -16.69036 -16.25128 -15.83971 -15.51203 -15.37692 -15.09703 -14.78038 -14.58109 -14.56004 -14.37649 -13.91226 -13.73455 -13.59290 -13.46130 -13.33016 -12.87355 -12.66411 -12.54750 -12.36490 -12.30029 -12.18035 -12.07508 -11.78187 -11.68895 -11.37452 -11.28742 -11.20061 -11.06735 -11.04199 -10.99651 -10.98994 -10.73607 -10.47894 -10.13521 -9.76956 -9.26706 -9.04101 -8.89254 -8.39993 -8.18464 -6.46622 -6.18874 -3.89061 3.01596 3.12913 3.24097 3.28587 3.32511 3.57592 3.66043 3.91671 4.22962 4.34419 4.41065 4.45731 4.49894 4.57504 4.62581 4.83766 4.95654 5.00291 5.04743 5.06326 5.12877 5.14050 5.16120 5.23095 5.27072 5.28573 5.40180 5.45241 5.51009 5.53228 5.55695 5.59137 5.60526 5.62057 5.65289 5.73318 5.83467 5.91268 5.91774 5.93989 5.96020 6.03310 6.16219 6.18954 6.49384 6.75156 6.84737 7.33817 7.61980 7.67427 8.37896 8.64611 9.26315 10.88512 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002092 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.486355 B =13378.238268 C =14974.237286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.151 4.151 6 C 0.064 3.936 7 N -0.686 5.686 8 C 0.033 3.967 9 C 0.138 3.862 10 O -0.554 6.554 11 C -0.119 4.119 12 C 0.120 3.880 13 N -0.618 5.618 14 C 0.534 3.466 15 O -0.520 6.520 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.111 3.889 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.336 0.664 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.370 0.630 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -20.264 19.776 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.099 0.901 5 C -0.209 4.209 6 C -0.065 4.065 7 N -0.318 5.318 8 C -0.097 4.097 9 C 0.097 3.903 10 O -0.360 6.360 11 C -0.157 4.157 12 C -0.003 4.003 13 N -0.354 5.354 14 C 0.322 3.678 15 O -0.395 6.395 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.012 4.012 27 C -0.188 4.188 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.217 0.783 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.094 0.906 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.198 -20.020 18.865 30.091 hybrid contribution -2.667 0.022 0.263 2.680 sum -14.865 -19.998 19.128 31.413 Atomic orbital electron populations 1.21810 0.95659 1.01582 1.02034 1.21535 0.96150 0.96092 1.01952 1.21195 0.94565 0.96349 0.98980 0.90058 1.21915 1.01758 1.00309 0.96884 1.22016 0.94793 0.89312 1.00395 1.60527 1.10447 1.11776 1.49092 1.22671 0.87868 0.97524 1.01603 1.21213 0.95309 0.89236 0.84539 1.86593 1.29708 1.77880 1.41778 1.21895 0.93004 0.98263 1.02587 1.21373 0.96766 0.90695 0.91460 1.48086 1.06641 1.53682 1.26999 1.20325 0.88497 0.77911 0.81076 1.90680 1.14254 1.60013 1.74528 1.23547 1.03684 1.02562 1.00220 1.85395 1.09081 1.64560 1.24491 1.22861 0.94072 1.38333 1.12969 0.90970 1.24990 0.95952 0.95689 0.96990 1.70022 1.14129 1.38486 1.27644 0.86175 0.80635 0.79404 0.79324 1.20285 1.20777 1.19702 1.21751 0.80172 0.96461 1.02823 1.22531 1.01286 0.95922 0.99020 0.92601 0.92862 0.92505 0.91901 0.92183 0.93021 0.92545 0.92186 0.90887 0.95273 0.84520 0.89956 0.94335 0.78267 0.90084 0.90406 0.89040 0.91174 0.89357 0.89345 0.92223 0.91251 0.89413 0.90586 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.12 -0.59 5.40 -26.73 -0.14 -0.73 16 3 C -0.09 -0.48 2.60 -90.62 -0.24 -0.72 16 4 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -0.70 8.72 37.16 0.32 -0.37 16 6 C 0.06 0.37 5.14 -3.82 -0.02 0.35 16 7 N -0.69 -4.19 5.49 -113.78 -0.62 -4.82 16 8 C 0.03 0.24 4.89 -3.82 -0.02 0.22 16 9 C 0.14 1.17 0.79 -90.58 -0.07 1.10 16 10 O -0.55 -4.67 11.69 -35.23 -0.41 -5.08 16 11 C -0.12 -1.21 5.11 -26.61 -0.14 -1.34 16 12 C 0.12 1.58 6.19 -3.71 -0.02 1.56 16 13 N -0.62 -9.24 2.97 -172.50 -0.51 -9.75 16 14 C 0.53 10.56 7.72 -10.98 -0.08 10.47 16 15 O -0.52 -12.26 15.27 5.56 0.08 -12.17 16 16 C -0.15 -3.13 4.50 36.01 0.16 -2.96 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 C 0.11 1.30 6.13 -3.48 -0.02 1.28 16 27 C -0.15 -1.39 4.91 -26.39 -0.13 -1.52 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.24 6.68 -51.93 -0.35 -0.10 16 35 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.34 1.69 5.57 -39.29 -0.22 1.48 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.37 1.98 7.62 45.56 0.35 2.33 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 45 H 0.07 0.90 7.81 -51.93 -0.41 0.50 16 46 H 0.09 1.72 7.93 -51.92 -0.41 1.31 16 47 H 0.09 1.71 7.70 -51.91 -0.40 1.31 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.07 0.75 7.81 -51.93 -0.41 0.34 16 50 H 0.09 1.06 5.93 -51.93 -0.31 0.75 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.09 0.72 7.43 -51.93 -0.39 0.33 16 LS Contribution 413.42 15.07 6.23 6.23 Total: -1.00 -34.25 413.42 -10.20 -44.45 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.62 Total: 0.28 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 0.16 Total: -6.10 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.40 Total: -40.21 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.33 Total: -17.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.25 -10.20 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674061412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.544 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds