Wall clock time and date at job start Wed Apr 1 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.08996 * 109.46720 * 304.99761 * 3 2 1 5 5 C 1.53007 * 109.47192 * 64.99523 * 3 2 1 6 6 C 1.52998 * 109.47361 * 184.99662 * 3 2 1 7 7 N 1.46903 * 109.47194 * 174.99822 * 6 3 2 8 8 C 1.46897 * 110.99880 * 180.02562 * 7 6 3 9 9 C 1.53004 * 109.46757 * 180.02562 * 8 7 6 10 10 O 1.42897 * 109.46003 * 65.02687 * 9 8 7 11 11 C 1.53042 * 109.45537 * 184.99958 * 9 8 7 12 12 C 1.53201 * 109.30946 * 181.36992 * 11 9 8 13 13 N 1.46920 * 108.77364 * 305.36286 * 12 11 9 14 14 C 1.34777 * 120.63268 * 233.58247 * 13 12 11 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00092 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47405 * 90.00153 * 22 20 18 24 24 H 1.48505 * 109.47032 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47409 * 329.99921 * 22 20 18 26 26 C 1.46927 * 118.74032 * 53.86485 * 13 12 11 27 27 C 1.53040 * 109.44792 * 305.05826 * 9 8 7 28 28 H 1.09003 * 109.46679 * 60.00157 * 1 2 3 29 29 H 1.09006 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47651 * 300.00330 * 1 2 3 31 31 H 1.08996 * 109.47651 * 239.99670 * 2 1 3 32 32 H 1.09007 * 109.47081 * 119.99532 * 2 1 3 33 33 H 1.09004 * 109.46594 * 59.99785 * 5 3 2 34 34 H 1.08994 * 109.47193 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46790 * 300.00380 * 5 3 2 36 36 H 1.09000 * 109.46923 * 54.99560 * 6 3 2 37 37 H 1.09003 * 109.47169 * 295.00101 * 6 3 2 38 38 H 1.00902 * 110.99616 * 56.04801 * 7 6 3 39 39 H 1.08999 * 109.47311 * 60.00294 * 8 7 6 40 40 H 1.09005 * 109.47020 * 299.99450 * 8 7 6 41 41 H 0.96697 * 114.00149 * 299.96731 * 10 9 8 42 42 H 1.09000 * 109.50220 * 61.42353 * 11 9 8 43 43 H 1.09000 * 109.50009 * 301.31531 * 11 9 8 44 44 H 1.09001 * 109.58322 * 185.57561 * 12 11 9 45 45 H 1.08997 * 109.58549 * 65.15220 * 12 11 9 46 46 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 47 47 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 48 48 H 0.97005 * 119.99806 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.58858 * 65.92197 * 26 13 12 50 50 H 1.08995 * 109.58867 * 186.34993 * 26 13 12 51 51 H 1.08999 * 109.49509 * 298.57501 * 27 9 8 52 52 H 1.09002 * 109.49899 * 58.67183 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1256 7 7 4.0446 2.8276 -0.2461 8 6 5.5078 2.8684 -0.3695 9 6 5.9689 4.3221 -0.4919 10 8 5.6725 5.0192 0.7198 11 6 7.4777 4.3588 -0.7453 12 6 7.9414 5.8163 -0.8332 13 7 7.1412 6.5063 -1.8539 14 6 7.7397 7.1727 -2.8611 15 8 8.9500 7.2063 -2.9311 16 6 6.9050 7.8760 -3.9001 17 16 7.9916 8.6714 -5.1097 18 6 6.7876 9.3959 -6.1728 19 1 5.7357 9.2687 -5.9632 20 6 7.1910 10.1308 -7.2789 21 7 8.4729 10.2870 -7.5335 22 14 5.9145 10.8995 -8.4055 23 1 5.5901 12.2669 -7.9258 24 1 6.4546 10.9747 -9.7868 25 1 4.6842 10.0680 -8.3996 26 6 5.6761 6.4615 -1.7525 27 6 5.2377 4.9922 -1.6575 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0697 1.5875 2.1492 34 1 1.9981 3.1544 1.3072 35 1 0.5488 2.1253 1.3968 36 1 3.8571 0.8799 -1.0112 37 1 4.0029 0.9836 0.7598 38 1 3.7313 3.3880 0.5323 39 1 5.8132 2.3141 -1.2570 40 1 5.9597 2.4174 0.5140 41 1 4.7320 5.0363 0.9438 42 1 7.7019 3.8487 -1.6821 43 1 7.9964 3.8608 0.0739 44 1 8.9949 5.8484 -1.1113 45 1 7.8012 6.3031 0.1319 46 1 6.2840 8.6307 -3.4175 47 1 6.2678 7.1507 -4.4062 48 1 8.7548 10.8004 -8.3068 49 1 5.3549 7.0000 -0.8609 50 1 5.2344 6.9195 -2.6375 51 1 5.4829 4.4760 -2.5857 52 1 4.1621 4.9450 -1.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674061412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:53 Heat of formation + Delta-G solvation = -128.771763 kcal Electronic energy + Delta-G solvation = -28339.618881 eV Core-core repulsion = 24463.369479 eV Total energy + Delta-G solvation = -3876.249402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40400 -39.84340 -38.34432 -36.58361 -35.07632 -34.58221 -33.29669 -32.15979 -30.80798 -30.26716 -28.07198 -27.64266 -26.51475 -24.41559 -24.05831 -22.96821 -21.66635 -20.75804 -20.39044 -19.54462 -18.20424 -17.80835 -17.04292 -16.91305 -16.85538 -16.53473 -16.28351 -15.96984 -15.68432 -15.26215 -15.06258 -15.00758 -14.87848 -14.58811 -14.45171 -14.10531 -13.88319 -13.86556 -13.55912 -13.30964 -13.16291 -13.01035 -12.89322 -12.83822 -12.73544 -12.68057 -12.59956 -12.25413 -12.15897 -12.14479 -11.74363 -11.70501 -11.47808 -11.39450 -11.22081 -11.13905 -10.94529 -10.74527 -10.25818 -9.64148 -9.38761 -8.67272 -8.34034 -6.12640 1.25957 1.43027 1.46303 1.57103 1.57566 2.12438 2.27854 2.99906 3.05153 3.24790 3.27292 3.63719 3.78184 3.79127 3.94903 3.97915 4.01680 4.09990 4.12504 4.24578 4.35143 4.37028 4.43853 4.45445 4.54668 4.63449 4.64836 4.66431 4.70455 4.74575 4.77497 4.83233 4.87035 4.95637 4.99099 5.01485 5.15883 5.18430 5.20597 5.24059 5.24513 5.32708 5.42030 5.53569 5.56150 5.59496 5.98590 6.20218 6.31991 6.42353 6.84711 7.06880 7.14843 8.75215 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002092 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.486355 B =13378.238268 C =14974.237286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.071 0.929 5 C -0.150 4.150 6 C 0.067 3.933 7 N -0.686 5.686 8 C 0.042 3.958 9 C 0.147 3.853 10 O -0.562 6.562 11 C -0.115 4.115 12 C 0.118 3.882 13 N -0.604 5.604 14 C 0.530 3.470 15 O -0.569 6.569 16 C -0.122 4.122 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.104 3.896 27 C -0.140 4.140 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.344 0.656 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.386 0.614 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.271 0.729 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.064 0.936 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 -21.020 20.932 34.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.090 0.910 5 C -0.207 4.207 6 C -0.062 4.062 7 N -0.319 5.319 8 C -0.087 4.087 9 C 0.106 3.894 10 O -0.370 6.370 11 C -0.154 4.154 12 C -0.004 4.004 13 N -0.338 5.338 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.273 4.273 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.018 4.018 27 C -0.178 4.178 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.164 0.836 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.285 -20.806 20.074 32.703 hybrid contribution -1.762 0.183 0.055 1.772 sum -17.047 -20.623 20.129 33.482 Atomic orbital electron populations 1.21807 0.95496 1.01753 1.01995 1.21529 0.96283 0.95962 1.01906 1.21124 0.94025 0.96410 0.98978 0.91042 1.21901 1.01851 1.00527 0.96411 1.21981 0.95129 0.89024 1.00109 1.60494 1.09644 1.12132 1.49647 1.22496 0.88549 0.96205 1.01474 1.21011 0.93840 0.90094 0.84429 1.86566 1.31342 1.77817 1.41287 1.21859 0.94655 0.95807 1.03064 1.21491 0.95485 0.92667 0.90793 1.48107 1.08372 1.51774 1.25521 1.20160 0.87726 0.78379 0.81916 1.90663 1.16090 1.62150 1.75919 1.23356 1.02313 1.02833 0.98792 1.85588 1.13240 1.66085 1.27597 1.23188 0.94306 1.38502 1.13283 0.89904 1.26149 0.98340 0.96024 0.98721 1.70190 1.16644 1.39457 1.28470 0.84940 0.77738 0.78578 0.76636 1.19280 1.20288 1.18098 1.22058 0.77686 0.98542 1.03559 1.22475 1.02485 0.93934 0.98936 0.92968 0.92630 0.92196 0.92234 0.91955 0.92921 0.91996 0.92117 0.91623 0.95118 0.83576 0.90503 0.94133 0.76455 0.90615 0.88844 0.91365 0.90343 0.87634 0.87569 0.92002 0.89506 0.89613 0.91705 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 71.98 0.70 -0.54 16 2 C -0.12 -1.00 5.40 30.59 0.17 -0.83 16 3 C -0.09 -0.74 2.60 -10.79 -0.03 -0.77 16 4 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 5 C -0.15 -1.04 8.72 71.98 0.63 -0.41 16 6 C 0.07 0.64 5.14 86.30 0.44 1.08 16 7 N -0.69 -6.52 5.49 -513.88 -2.82 -9.34 16 8 C 0.04 0.50 4.89 86.31 0.42 0.93 16 9 C 0.15 2.13 0.79 -10.76 -0.01 2.12 16 10 O -0.56 -7.61 11.69 -148.98 -1.74 -9.35 16 11 C -0.12 -2.16 5.11 30.68 0.16 -2.00 16 12 C 0.12 3.02 6.19 86.37 0.53 3.56 16 13 N -0.60 -17.52 2.97 -818.06 -2.43 -19.95 16 14 C 0.53 21.18 7.72 87.66 0.68 21.86 16 15 O -0.57 -27.91 15.27 -3.02 -0.05 -27.96 16 16 C -0.12 -5.08 4.50 71.24 0.32 -4.76 16 17 S -0.15 -8.68 20.57 -56.49 -1.16 -9.85 16 18 C -0.54 -31.53 9.50 67.95 0.65 -30.89 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 22 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C 0.10 2.17 6.13 86.51 0.53 2.70 16 27 C -0.14 -2.24 4.91 30.82 0.15 -2.09 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 0.44 6.56 -2.39 -0.02 0.43 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.36 6.68 -2.39 -0.02 0.34 16 35 H 0.06 0.42 6.57 -2.38 -0.02 0.41 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.34 2.33 5.57 -89.69 -0.50 1.83 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.39 2.62 7.62 -74.06 -0.56 2.06 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 2.09 7.01 -2.39 -0.02 2.07 16 45 H 0.08 1.91 7.81 -2.39 -0.02 1.89 16 46 H 0.11 4.01 7.93 -2.39 -0.02 3.99 16 47 H 0.11 4.02 7.70 -2.39 -0.02 4.01 16 48 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 49 H 0.09 1.59 7.81 -2.38 -0.02 1.57 16 50 H 0.09 1.85 5.93 -2.39 -0.01 1.84 16 51 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.11 1.37 7.43 -2.39 -0.02 1.35 16 Total: -1.00 -76.40 413.42 -0.24 -76.64 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.16 Total: 19.05 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.80 Total: -8.89 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -4.96 Total: -85.58 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.79 Total: -37.31 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -76.40 -0.24 -76.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674061412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.129 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds