Wall clock time and date at job start Wed Apr 1 2020 04:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 N 1.46496 * 109.47340 * 300.00115 * 3 2 1 5 5 C 1.36938 * 120.00472 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99738 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00380 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00070 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47553 * 119.99823 * 9 7 5 12 12 H 1.48501 * 109.47267 * 240.00106 * 9 7 5 13 13 N 1.46500 * 109.47403 * 239.99935 * 2 1 3 14 14 C 1.34773 * 120.00369 * 175.46627 * 13 2 1 15 15 O 1.21276 * 119.99894 * 355.98330 * 14 13 2 16 16 C 1.50706 * 119.99970 * 175.70928 * 14 13 2 17 17 H 1.08999 * 109.68005 * 54.75965 * 16 14 13 18 18 C 1.53405 * 109.68098 * 294.19801 * 16 14 13 19 19 C 1.53073 * 108.29511 * 175.57351 * 18 16 14 20 20 C 1.50759 * 109.68215 * 48.21618 * 19 18 16 21 21 C 1.38515 * 118.76523 * 162.37488 * 20 19 18 22 22 C 1.38102 * 120.31579 * 179.55035 * 21 20 19 23 23 C 1.38291 * 119.98527 * 0.03558 * 22 21 20 24 24 C 1.37964 * 119.95744 * 0.09083 * 23 22 21 25 25 C 1.38376 * 121.40640 * 342.12926 * 20 19 18 26 26 O 1.35843 * 121.80061 * 0.55050 * 25 20 19 27 27 C 1.53004 * 109.47416 * 120.00116 * 2 1 3 28 28 C 1.52998 * 117.49739 * 121.79712 * 27 2 1 29 29 C 1.53004 * 117.49592 * 53.13908 * 27 2 1 30 30 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47248 * 299.99635 * 1 2 3 32 32 H 1.08999 * 109.47350 * 60.00265 * 1 2 3 33 33 H 1.08999 * 109.47478 * 60.00137 * 3 2 1 34 34 H 1.09008 * 109.47360 * 179.97438 * 3 2 1 35 35 H 0.97006 * 120.00071 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00186 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99689 * 355.46875 * 13 2 1 38 38 H 1.09000 * 109.69727 * 295.27606 * 18 16 14 39 39 H 1.08999 * 109.70053 * 55.87459 * 18 16 14 40 40 H 1.08998 * 109.43616 * 288.14537 * 19 18 16 41 41 H 1.09002 * 109.43433 * 168.28126 * 19 18 16 42 42 H 1.08000 * 119.83878 * 359.55586 * 21 20 19 43 43 H 1.08004 * 120.00730 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.02036 * 180.11191 * 23 22 21 45 45 H 1.08000 * 119.89628 * 179.97438 * 24 23 22 46 46 H 1.08995 * 115.54785 * 267.47363 * 27 2 1 47 47 H 1.09002 * 117.50287 * 0.02562 * 28 27 2 48 48 H 1.09005 * 117.49418 * 145.02396 * 28 27 2 49 49 H 1.08996 * 117.49361 * 214.98220 * 29 27 2 50 50 H 1.09000 * 117.49935 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4126 6 1 2.5023 3.9694 -0.7012 7 6 1.4189 4.0988 -2.5457 8 7 0.6626 3.4591 -3.4123 9 14 1.8701 5.8872 -2.8413 10 1 2.7239 6.3729 -1.7276 11 1 2.6121 6.0054 -4.1222 12 1 0.6327 6.7054 -2.9087 13 7 2.0184 -0.6906 -1.1961 14 6 3.3400 -0.7345 -1.4566 15 8 4.1190 -0.1410 -0.7413 16 6 3.8502 -1.5260 -2.6332 17 1 3.3461 -1.1985 -3.5424 18 6 3.5863 -3.0198 -2.4045 19 6 4.0139 -3.7813 -3.6616 20 6 5.3888 -3.3305 -4.0852 21 6 6.1130 -4.1282 -4.9558 22 6 7.3718 -3.7416 -5.3720 23 6 7.9149 -2.5533 -4.9187 24 6 7.1994 -1.7560 -4.0495 25 6 5.9312 -2.1428 -3.6272 26 8 5.2590 -1.3331 -2.7682 27 6 2.0400 -0.7213 1.2492 28 6 2.9497 -1.9340 1.0428 29 6 1.5080 -2.1304 1.5181 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 0.9942 1.6616 -1.8348 36 1 0.3386 3.9166 -4.2039 37 1 1.3905 -1.1163 -1.8007 38 1 4.1649 -3.3683 -1.5490 39 1 2.5241 -3.1813 -2.2206 40 1 3.3039 -3.5836 -4.4646 41 1 4.0320 -4.8503 -3.4495 42 1 5.6912 -5.0569 -5.3108 43 1 7.9319 -4.3672 -6.0512 44 1 8.8985 -2.2496 -5.2453 45 1 7.6247 -0.8284 -3.6958 46 1 2.2376 -0.0849 2.1117 47 1 3.1852 -2.2178 0.0170 48 1 3.7457 -2.0956 1.7698 49 1 1.3560 -2.4211 2.5575 50 1 0.7942 -2.5434 0.8052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698653411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:02 Heat of formation + Delta-G solvation = 1.453632 kcal Electronic energy + Delta-G solvation = -31478.731210 eV Core-core repulsion = 27472.684853 eV Total energy + Delta-G solvation = -4006.046356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10777 -40.04068 -37.81836 -36.70628 -34.94880 -34.57461 -33.32045 -31.74806 -30.56343 -30.27923 -29.44010 -26.51164 -25.90816 -23.97496 -23.71006 -22.57926 -22.14249 -21.52222 -21.20532 -19.90742 -19.08215 -17.89769 -17.37605 -17.24189 -16.64263 -15.87164 -15.38228 -15.33945 -15.06815 -14.60942 -14.40440 -14.32734 -14.18407 -13.80571 -13.52316 -13.37870 -13.31116 -13.09325 -12.83773 -12.69213 -12.17481 -12.09387 -11.97870 -11.84821 -11.68093 -11.40033 -11.31961 -11.11584 -10.98523 -10.85791 -10.77365 -10.73881 -10.54898 -10.20682 -10.00718 -9.82949 -9.63418 -9.21922 -8.90874 -8.70621 -8.60825 -8.21517 -6.78541 -5.70332 -2.95683 1.19806 1.33757 2.70969 2.95236 3.48164 3.54424 3.56584 3.59132 3.78817 3.99641 4.37494 4.50378 4.56336 4.63960 4.69135 4.84538 4.89767 4.95820 5.02838 5.09806 5.13626 5.16999 5.30496 5.36618 5.42740 5.43548 5.54234 5.55301 5.66325 5.70132 5.71397 5.74895 5.78590 5.92691 5.97918 6.04221 6.14995 6.19753 6.25274 6.28907 6.33662 6.36048 6.41371 6.59760 6.63551 6.67505 6.93635 7.19182 7.40377 7.79545 7.84259 8.49732 8.59131 9.61245 10.19207 10.54815 11.53240 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.003852 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.528044 B = 7266.714324 C = 9411.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.203 3.797 3 C 0.138 3.862 4 N -0.726 5.726 5 C -0.226 4.226 6 H 0.069 0.931 7 C -0.017 4.017 8 N -0.938 5.938 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.711 5.711 14 C 0.531 3.469 15 O -0.497 6.497 16 C 0.073 3.927 17 H 0.098 0.902 18 C -0.149 4.149 19 C -0.075 4.075 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.158 4.158 23 C -0.088 4.088 24 C -0.146 4.146 25 C 0.139 3.861 26 O -0.284 6.284 27 C -0.143 4.143 28 C -0.167 4.167 29 C -0.182 4.182 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.381 0.619 36 H 0.252 0.748 37 H 0.395 0.605 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -20.887 0.749 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.118 3.882 3 C 0.010 3.990 4 N -0.370 5.370 5 C -0.357 4.357 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.588 5.588 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.365 5.365 14 C 0.316 3.684 15 O -0.370 6.370 16 C 0.013 3.987 17 H 0.115 0.885 18 C -0.187 4.187 19 C -0.112 4.112 20 C -0.166 4.166 21 C -0.103 4.103 22 C -0.176 4.176 23 C -0.106 4.106 24 C -0.164 4.164 25 C 0.094 3.906 26 O -0.196 6.196 27 C -0.163 4.163 28 C -0.204 4.204 29 C -0.219 4.219 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.215 0.785 36 H 0.062 0.938 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.127 0.873 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.076 -20.114 1.455 21.062 hybrid contribution -0.377 0.600 -0.925 1.165 sum 5.699 -19.514 0.530 20.336 Atomic orbital electron populations 1.21988 0.92969 1.01348 1.04188 1.20080 0.93707 0.92635 0.81827 1.21189 0.99312 0.87610 0.90909 1.42238 1.61190 1.10462 1.23111 1.19287 1.24682 0.87549 1.04216 0.91312 1.24657 1.00887 0.98182 0.97488 1.69650 1.40030 1.35910 1.13207 0.86137 0.77432 0.85221 0.77612 1.20610 1.22025 1.22036 1.45815 1.06300 1.57536 1.26818 1.19449 0.82985 0.81121 0.84886 1.90710 1.55625 1.42185 1.48461 1.22323 0.81418 0.95583 0.99367 0.88450 1.22247 1.03494 0.93460 0.99462 1.20478 0.93104 1.00474 0.97138 1.19830 0.98416 0.95579 1.02822 1.20853 0.94342 0.98895 0.96251 1.20987 0.96253 0.97787 1.02551 1.20924 0.99432 0.94107 0.96135 1.20670 0.93733 1.01747 1.00284 1.18805 0.92362 0.89054 0.90417 1.86115 1.19810 1.55090 1.58606 1.22571 1.03955 0.90243 0.99542 1.23000 0.92875 1.02373 1.02197 1.22971 0.97356 1.00036 1.01554 0.92859 0.90900 0.90663 0.96129 0.92551 0.78525 0.93832 0.77105 0.89764 0.89112 0.90029 0.89682 0.85959 0.86041 0.85478 0.84975 0.87297 0.88887 0.89490 0.89317 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.17 37.16 0.30 -1.79 16 2 C 0.20 3.24 0.55 -131.82 -0.07 3.17 16 3 C 0.14 2.94 4.84 -4.05 -0.02 2.92 16 4 N -0.73 -18.45 5.17 -59.91 -0.31 -18.76 16 5 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.38 13.06 55.49 0.72 -27.66 16 9 Si 0.90 23.18 29.55 -169.99 -5.02 18.15 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 N -0.71 -10.57 4.16 -47.61 -0.20 -10.77 16 14 C 0.53 9.03 4.44 -10.98 -0.05 8.98 16 15 O -0.50 -10.49 12.78 -14.19 -0.18 -10.68 16 16 C 0.07 1.06 3.21 -27.67 -0.09 0.97 16 17 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.15 -1.53 4.72 -26.48 -0.13 -1.66 16 19 C -0.08 -0.69 5.86 -27.82 -0.16 -0.85 16 20 C -0.17 -1.94 5.75 -104.44 -0.60 -2.54 16 21 C -0.09 -0.85 9.67 -39.53 -0.38 -1.24 16 22 C -0.16 -1.53 10.04 -39.61 -0.40 -1.93 16 23 C -0.09 -0.93 10.04 -39.66 -0.40 -1.33 16 24 C -0.15 -1.92 9.94 -39.34 -0.39 -2.31 16 25 C 0.14 2.00 6.47 -39.19 -0.25 1.75 16 26 O -0.28 -4.78 9.47 -39.00 -0.37 -5.15 16 27 C -0.14 -2.03 4.86 -90.62 -0.44 -2.47 16 28 C -0.17 -2.22 8.52 -26.69 -0.23 -2.45 16 29 C -0.18 -2.04 9.68 -26.69 -0.26 -2.30 16 30 H 0.05 0.60 6.89 -51.93 -0.36 0.24 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.37 5.73 -51.92 -0.30 1.07 16 35 H 0.38 9.83 6.35 -40.82 -0.26 9.57 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.40 4.81 8.45 -40.82 -0.35 4.46 16 38 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 39 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 46 H 0.11 1.58 8.06 -51.93 -0.42 1.16 16 47 H 0.09 1.26 3.83 -51.93 -0.20 1.06 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.93 7.17 -51.93 -0.37 0.55 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -34.81 392.24 -10.88 -45.69 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.62 Total: 13.64 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.81 Total: -10.37 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.22 Total: -57.19 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.55 Total: -15.83 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.81 -10.88 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698653411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.144 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds