Wall clock time and date at job start Wed Apr 1 2020 04:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 N 1.46496 * 109.47340 * 300.00115 * 3 2 1 5 5 C 1.36938 * 120.00472 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99738 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00380 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00070 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47553 * 119.99823 * 9 7 5 12 12 H 1.48501 * 109.47267 * 240.00106 * 9 7 5 13 13 N 1.46500 * 109.47403 * 239.99935 * 2 1 3 14 14 C 1.34773 * 120.00369 * 175.46627 * 13 2 1 15 15 O 1.21276 * 119.99894 * 355.98330 * 14 13 2 16 16 C 1.50706 * 119.99970 * 175.70928 * 14 13 2 17 17 H 1.08999 * 109.68005 * 54.75965 * 16 14 13 18 18 C 1.53405 * 109.68098 * 294.19801 * 16 14 13 19 19 C 1.53073 * 108.29511 * 175.57351 * 18 16 14 20 20 C 1.50759 * 109.68215 * 48.21618 * 19 18 16 21 21 C 1.38515 * 118.76523 * 162.37488 * 20 19 18 22 22 C 1.38102 * 120.31579 * 179.55035 * 21 20 19 23 23 C 1.38291 * 119.98527 * 0.03558 * 22 21 20 24 24 C 1.37964 * 119.95744 * 0.09083 * 23 22 21 25 25 C 1.38376 * 121.40640 * 342.12926 * 20 19 18 26 26 O 1.35843 * 121.80061 * 0.55050 * 25 20 19 27 27 C 1.53004 * 109.47416 * 120.00116 * 2 1 3 28 28 C 1.52998 * 117.49739 * 121.79712 * 27 2 1 29 29 C 1.53004 * 117.49592 * 53.13908 * 27 2 1 30 30 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47248 * 299.99635 * 1 2 3 32 32 H 1.08999 * 109.47350 * 60.00265 * 1 2 3 33 33 H 1.08999 * 109.47478 * 60.00137 * 3 2 1 34 34 H 1.09008 * 109.47360 * 179.97438 * 3 2 1 35 35 H 0.97006 * 120.00071 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00186 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99689 * 355.46875 * 13 2 1 38 38 H 1.09000 * 109.69727 * 295.27606 * 18 16 14 39 39 H 1.08999 * 109.70053 * 55.87459 * 18 16 14 40 40 H 1.08998 * 109.43616 * 288.14537 * 19 18 16 41 41 H 1.09002 * 109.43433 * 168.28126 * 19 18 16 42 42 H 1.08000 * 119.83878 * 359.55586 * 21 20 19 43 43 H 1.08004 * 120.00730 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.02036 * 180.11191 * 23 22 21 45 45 H 1.08000 * 119.89628 * 179.97438 * 24 23 22 46 46 H 1.08995 * 115.54785 * 267.47363 * 27 2 1 47 47 H 1.09002 * 117.50287 * 0.02562 * 28 27 2 48 48 H 1.09005 * 117.49418 * 145.02396 * 28 27 2 49 49 H 1.08996 * 117.49361 * 214.98220 * 29 27 2 50 50 H 1.09000 * 117.49935 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4126 6 1 2.5023 3.9694 -0.7012 7 6 1.4189 4.0988 -2.5457 8 7 0.6626 3.4591 -3.4123 9 14 1.8701 5.8872 -2.8413 10 1 2.7239 6.3729 -1.7276 11 1 2.6121 6.0054 -4.1222 12 1 0.6327 6.7054 -2.9087 13 7 2.0184 -0.6906 -1.1961 14 6 3.3400 -0.7345 -1.4566 15 8 4.1190 -0.1410 -0.7413 16 6 3.8502 -1.5260 -2.6332 17 1 3.3461 -1.1985 -3.5424 18 6 3.5863 -3.0198 -2.4045 19 6 4.0139 -3.7813 -3.6616 20 6 5.3888 -3.3305 -4.0852 21 6 6.1130 -4.1282 -4.9558 22 6 7.3718 -3.7416 -5.3720 23 6 7.9149 -2.5533 -4.9187 24 6 7.1994 -1.7560 -4.0495 25 6 5.9312 -2.1428 -3.6272 26 8 5.2590 -1.3331 -2.7682 27 6 2.0400 -0.7213 1.2492 28 6 2.9497 -1.9340 1.0428 29 6 1.5080 -2.1304 1.5181 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 0.9942 1.6616 -1.8348 36 1 0.3386 3.9166 -4.2039 37 1 1.3905 -1.1163 -1.8007 38 1 4.1649 -3.3683 -1.5490 39 1 2.5241 -3.1813 -2.2206 40 1 3.3039 -3.5836 -4.4646 41 1 4.0320 -4.8503 -3.4495 42 1 5.6912 -5.0569 -5.3108 43 1 7.9319 -4.3672 -6.0512 44 1 8.8985 -2.2496 -5.2453 45 1 7.6247 -0.8284 -3.6958 46 1 2.2376 -0.0849 2.1117 47 1 3.1852 -2.2178 0.0170 48 1 3.7457 -2.0956 1.7698 49 1 1.3560 -2.4211 2.5575 50 1 0.7942 -2.5434 0.8052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698653411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:01 Heat of formation + Delta-G solvation = -20.113176 kcal Electronic energy + Delta-G solvation = -31479.666417 eV Core-core repulsion = 27472.684853 eV Total energy + Delta-G solvation = -4006.981563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21039 -41.17867 -38.86865 -37.89806 -36.60633 -35.50883 -34.87035 -33.33365 -31.92236 -31.15141 -30.85642 -27.72785 -27.34268 -25.53793 -24.84153 -23.44931 -23.12491 -23.03336 -22.42579 -20.86267 -20.40774 -19.31143 -18.89712 -18.52472 -17.58369 -17.16893 -16.90484 -16.33327 -16.26839 -16.06876 -15.61655 -15.39789 -15.25989 -15.06431 -15.01036 -14.73419 -14.53355 -14.29514 -14.11692 -13.58764 -13.51302 -13.45371 -13.28988 -13.02042 -12.87117 -12.81925 -12.52077 -12.40462 -12.25790 -12.17754 -12.10757 -12.01281 -11.92605 -11.79820 -11.46268 -11.20766 -11.07121 -10.94529 -10.37898 -9.98644 -9.73809 -9.14442 -8.92791 -7.97323 -5.22304 0.36181 0.45132 1.41804 1.43181 1.52861 1.54455 1.70694 2.52791 2.59891 2.82695 2.95991 3.35768 3.47904 3.53941 3.64700 3.75666 3.80193 3.89778 3.99761 4.00099 4.16509 4.18383 4.23848 4.34088 4.36012 4.37900 4.48551 4.57429 4.60521 4.62788 4.80453 4.82431 4.87414 4.91825 4.94954 4.98138 5.01387 5.08731 5.13400 5.20830 5.29791 5.33352 5.35012 5.37899 5.45876 5.51160 5.58480 5.68479 5.87656 6.26529 6.41170 6.63303 7.31925 7.34135 8.08433 8.37511 9.25923 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.003852 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.528044 B = 7266.714324 C = 9411.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.212 3.788 3 C 0.138 3.862 4 N -0.728 5.728 5 C -0.242 4.242 6 H 0.059 0.941 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.286 1.286 13 N -0.699 5.699 14 C 0.527 3.473 15 O -0.549 6.549 16 C 0.071 3.929 17 H 0.095 0.905 18 C -0.137 4.137 19 C -0.072 4.072 20 C -0.171 4.171 21 C -0.085 4.085 22 C -0.153 4.153 23 C -0.091 4.091 24 C -0.175 4.175 25 C 0.101 3.899 26 O -0.324 6.324 27 C -0.167 4.167 28 C -0.179 4.179 29 C -0.142 4.142 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.024 0.976 35 H 0.378 0.622 36 H 0.251 0.749 37 H 0.411 0.589 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 -24.170 -0.087 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.126 3.874 3 C 0.010 3.990 4 N -0.371 5.371 5 C -0.374 4.374 6 H 0.077 0.923 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.212 1.212 13 N -0.353 5.353 14 C 0.313 3.687 15 O -0.425 6.425 16 C 0.012 3.988 17 H 0.113 0.887 18 C -0.175 4.175 19 C -0.109 4.109 20 C -0.172 4.172 21 C -0.102 4.102 22 C -0.171 4.171 23 C -0.109 4.109 24 C -0.194 4.194 25 C 0.056 3.944 26 O -0.238 6.238 27 C -0.186 4.186 28 C -0.216 4.216 29 C -0.178 4.178 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.212 0.788 36 H 0.060 0.940 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.133 0.867 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.127 0.873 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.919 -23.429 0.621 23.948 hybrid contribution 0.086 1.627 -0.670 1.761 sum 5.005 -21.802 -0.048 22.369 Atomic orbital electron populations 1.21928 0.91102 1.03603 1.02984 1.19880 0.94831 0.89441 0.83257 1.21218 0.97402 0.91285 0.89061 1.42285 1.60993 1.09669 1.24202 1.19551 1.24431 0.89176 1.04250 0.92254 1.25375 1.01262 1.02034 0.97385 1.69768 1.40856 1.37245 1.13460 0.85187 0.77280 0.80770 0.77243 1.20022 1.22140 1.21244 1.45719 1.06049 1.56751 1.26770 1.20029 0.83134 0.80495 0.85054 1.90685 1.56971 1.44393 1.50475 1.22378 0.80732 0.98067 0.97658 0.88689 1.22239 1.05150 0.90107 0.99976 1.20595 0.91799 1.01746 0.96724 1.20195 0.99795 0.94572 1.02656 1.21298 0.94207 0.99615 0.95117 1.21440 0.96389 0.97256 1.01999 1.21225 1.00162 0.94269 0.95214 1.20833 0.94402 1.02191 1.01991 1.19173 0.92981 0.90480 0.91749 1.86046 1.20954 1.56831 1.59969 1.22428 1.06418 0.91481 0.98304 1.23013 0.94326 1.02103 1.02157 1.23086 0.95636 0.95931 1.03168 0.88774 0.90788 0.93150 0.96628 0.95796 0.78847 0.93988 0.75260 0.90660 0.86160 0.88499 0.86660 0.82524 0.82806 0.83314 0.86717 0.88396 0.89163 0.90067 0.87341 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.17 71.98 0.59 -3.16 16 2 C 0.21 6.78 0.55 3.60 0.00 6.79 16 3 C 0.14 6.19 4.84 86.38 0.42 6.60 16 4 N -0.73 -38.48 5.17 -343.46 -1.78 -40.25 16 5 C -0.24 -14.46 9.99 84.03 0.84 -13.62 16 6 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 8 N -0.96 -59.09 13.06 21.65 0.28 -58.81 16 9 Si 0.97 48.50 29.55 68.60 2.03 50.53 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 N -0.70 -20.76 4.16 -422.93 -1.76 -22.52 16 14 C 0.53 18.64 4.44 87.66 0.39 19.03 16 15 O -0.55 -24.88 12.78 15.87 0.20 -24.68 16 16 C 0.07 2.12 3.21 29.99 0.10 2.22 16 17 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 18 C -0.14 -2.61 4.72 30.75 0.15 -2.47 16 19 C -0.07 -1.12 5.86 29.89 0.18 -0.94 16 20 C -0.17 -3.78 5.75 -19.75 -0.11 -3.89 16 21 C -0.08 -1.43 9.67 22.30 0.22 -1.22 16 22 C -0.15 -2.56 10.04 22.25 0.22 -2.34 16 23 C -0.09 -1.88 10.04 22.22 0.22 -1.65 16 24 C -0.18 -4.95 9.94 22.42 0.22 -4.72 16 25 C 0.10 3.02 6.47 22.52 0.15 3.17 16 26 O -0.32 -11.75 9.47 -72.90 -0.69 -12.44 16 27 C -0.17 -4.65 4.86 -10.79 -0.05 -4.70 16 28 C -0.18 -4.62 8.52 30.62 0.26 -4.36 16 29 C -0.14 -2.71 9.68 30.62 0.30 -2.41 16 30 H 0.09 1.77 6.89 -2.39 -0.02 1.75 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.63 6.86 -2.39 -0.02 1.61 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.02 1.26 5.73 -2.38 -0.01 1.24 16 35 H 0.38 20.12 6.35 -92.70 -0.59 19.53 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.41 9.45 8.45 -92.71 -0.78 8.67 16 38 H 0.07 1.59 7.66 -2.39 -0.02 1.57 16 39 H 0.12 1.52 8.09 -2.39 -0.02 1.50 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.11 3.42 8.06 -2.91 -0.02 3.39 16 46 H 0.10 2.91 8.06 -2.39 -0.02 2.89 16 47 H 0.09 2.39 3.83 -2.39 -0.01 2.38 16 48 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 49 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.11 1.71 7.17 -2.39 -0.02 1.70 16 Total: -1.00 -81.05 392.24 2.42 -78.63 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -0.40 Total: 40.81 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.54 Total: -11.26 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -3.25 Total: -121.58 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.49 Total: -37.12 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -81.05 2.42 -78.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698653411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.515 kcal (2) G-P(sol) polarization free energy of solvation -81.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds