Wall clock time and date at job start Wed Apr 1 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.46948 * 2 1 4 4 C 1.42911 * 113.99851 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46774 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47213 * 65.00424 * 5 4 3 7 7 C 1.46904 * 111.00057 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.45425 * 325.02712 * 7 6 5 9 9 C 1.53035 * 109.46112 * 84.99611 * 7 6 5 10 10 C 1.53191 * 109.31327 * 181.37468 * 9 7 6 11 11 N 1.46926 * 108.89109 * 305.29292 * 10 9 7 12 12 C 1.34773 * 120.63302 * 233.67613 * 11 10 9 13 13 O 1.21281 * 120.00152 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99924 * 359.97438 * 12 11 10 15 15 S 1.81001 * 109.47141 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99931 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00168 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31641 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00409 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47025 * 59.99999 * 20 18 16 22 22 H 1.48498 * 109.47497 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47203 * 300.00284 * 20 18 16 24 24 C 1.47207 * 118.55531 * 53.54119 * 11 10 9 25 25 C 1.53038 * 109.44743 * 205.06173 * 7 6 5 26 26 H 1.08996 * 109.50003 * 58.66775 * 25 7 6 27 27 C 1.52995 * 109.49696 * 298.56893 * 25 7 6 28 28 C 1.52995 * 109.47268 * 175.00177 * 27 25 7 29 29 H 1.09002 * 109.47118 * 59.99843 * 1 2 3 30 30 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47331 * 300.00063 * 1 2 3 32 32 H 1.09005 * 109.47058 * 240.00412 * 2 1 3 33 33 H 1.09000 * 109.47624 * 120.00246 * 2 1 3 34 34 H 1.08997 * 109.46790 * 60.00406 * 4 3 2 35 35 H 1.08999 * 109.47071 * 300.00518 * 4 3 2 36 36 H 1.09003 * 109.47483 * 304.99829 * 5 4 3 37 37 H 1.09007 * 109.46654 * 185.00168 * 5 4 3 38 38 H 1.00894 * 111.00146 * 56.04121 * 6 5 4 39 39 H 1.09003 * 109.49576 * 61.42137 * 9 7 6 40 40 H 1.09000 * 109.52700 * 301.34185 * 9 7 6 41 41 H 1.09002 * 109.58786 * 65.15336 * 10 9 7 42 42 H 1.08996 * 109.58870 * 185.43616 * 10 9 7 43 43 H 1.09002 * 109.47628 * 300.00335 * 14 12 11 44 44 H 1.09003 * 109.47142 * 60.00485 * 14 12 11 45 45 H 0.96993 * 119.99621 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.53610 * 186.67231 * 24 11 10 47 47 H 1.09002 * 109.68003 * 66.36699 * 24 11 10 48 48 H 1.09007 * 109.47243 * 295.00397 * 27 25 7 49 49 H 1.09001 * 109.47183 * 55.00228 * 27 25 7 50 50 H 1.09002 * 109.47567 * 179.97438 * 28 27 25 51 51 H 1.08994 * 109.47352 * 299.99925 * 28 27 25 52 52 H 1.08998 * 109.47266 * 60.00354 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 7 3.3856 3.5620 1.2564 7 6 3.7487 4.9851 1.2928 8 1 4.7041 5.1290 0.7880 9 6 2.6687 5.8051 0.5834 10 6 3.0675 7.2842 0.5932 11 7 3.3229 7.6988 1.9794 12 6 2.6927 8.7687 2.5034 13 8 2.9125 9.1011 3.6488 14 6 1.7156 9.5526 1.6656 15 16 1.0423 10.9186 2.6438 16 6 -0.0372 11.6434 1.4546 17 1 -0.1161 11.2164 0.4658 18 6 -0.7862 12.7632 1.7887 19 7 -0.6904 13.2834 2.9941 20 14 -1.9312 13.5312 0.5283 21 1 -2.9469 12.5323 0.1087 22 1 -2.6111 14.7070 1.1287 23 1 -1.1455 13.9650 -0.6548 24 6 4.2789 6.9189 2.7824 25 6 3.8666 5.4438 2.7480 26 1 4.6195 4.8436 3.2588 27 6 2.5166 5.2745 3.4477 28 6 2.6653 5.6148 4.9319 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.3498 3.4417 -0.8407 37 1 4.9082 3.0255 -0.0880 38 1 3.7619 3.0727 2.0545 39 1 1.7182 5.6810 1.1023 40 1 2.5685 5.4622 -0.4464 41 1 3.9699 7.4233 -0.0021 42 1 2.2584 7.8835 0.1758 43 1 2.2264 9.9511 0.7890 44 1 0.9037 8.8987 1.3470 45 1 -1.2136 14.0661 3.2275 46 1 4.2681 7.2774 3.8116 47 1 5.2812 7.0278 2.3680 48 1 1.7854 5.9430 2.9932 49 1 2.1801 4.2430 3.3434 50 1 1.7034 5.4947 5.4304 51 1 3.3964 4.9464 5.3865 52 1 3.0017 6.6463 5.0363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699602469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:32 Heat of formation + Delta-G solvation = -91.498078 kcal Electronic energy + Delta-G solvation = -28780.241979 eV Core-core repulsion = 24905.608886 eV Total energy + Delta-G solvation = -3874.633094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.35474 -38.58319 -37.86506 -35.39083 -34.07993 -32.39502 -32.13265 -30.87641 -30.15360 -28.95689 -27.57166 -25.47331 -24.37198 -23.84333 -23.07985 -22.51927 -21.83441 -20.11734 -18.29967 -17.64160 -17.23076 -16.81173 -16.45648 -15.84533 -15.65327 -15.44000 -15.17069 -14.77581 -14.76119 -14.32120 -14.13706 -13.93824 -13.85741 -13.51755 -13.24978 -12.97613 -12.84518 -12.61532 -12.56768 -12.35227 -12.17621 -12.00892 -11.82669 -11.73298 -11.61212 -11.42156 -11.26791 -11.08067 -11.01214 -10.99710 -10.73657 -10.65153 -10.50570 -10.21165 -9.88949 -9.77412 -9.26977 -9.02615 -8.63573 -8.42842 -8.18521 -6.45902 -6.18139 -3.88335 2.99467 3.12446 3.25968 3.28747 3.31787 3.36324 3.64924 3.80266 4.23701 4.46712 4.55495 4.68945 4.70116 4.81337 4.84109 4.93646 4.98452 5.01983 5.02723 5.06645 5.10832 5.15633 5.16808 5.31120 5.35859 5.41852 5.45387 5.51997 5.56702 5.58077 5.62140 5.65497 5.71844 5.74336 5.79512 5.83397 5.93291 5.97575 6.01040 6.16851 6.18438 6.21983 6.43311 6.51705 6.72222 6.76273 6.93850 7.14279 7.62210 7.64852 8.38422 8.63966 9.27004 10.89211 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002363 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.468996 B =11845.524086 C =12996.888010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.370 6.370 4 C 0.066 3.934 5 C 0.060 3.940 6 N -0.673 5.673 7 C 0.095 3.905 8 H 0.043 0.957 9 C -0.123 4.123 10 C 0.107 3.893 11 N -0.616 5.616 12 C 0.537 3.463 13 O -0.517 6.517 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.117 3.883 25 C -0.101 4.101 26 H 0.075 0.925 27 C -0.110 4.110 28 C -0.157 4.157 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.339 0.661 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.046 0.954 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -27.168 -6.832 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.289 6.289 4 C -0.011 4.011 5 C -0.069 4.069 6 N -0.305 5.305 7 C -0.014 4.014 8 H 0.061 0.939 9 C -0.162 4.162 10 C -0.017 4.017 11 N -0.352 5.352 12 C 0.325 3.675 13 O -0.392 6.392 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.006 4.006 25 C -0.121 4.121 26 H 0.093 0.907 27 C -0.147 4.147 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.268 -26.245 -5.224 28.662 hybrid contribution 0.211 -0.328 -2.152 2.187 sum 10.479 -26.573 -7.376 29.501 Atomic orbital electron populations 1.21724 0.93684 1.02007 1.03417 1.22435 0.95803 0.84263 0.99527 1.88047 1.20207 1.25466 1.95218 1.22482 0.82382 0.96539 0.99694 1.22026 0.97189 0.93337 0.94367 1.60409 1.64365 1.02095 1.03606 1.21495 0.96529 0.87774 0.95632 0.93950 1.21946 0.99941 0.93293 1.00972 1.21728 1.01615 0.95533 0.82793 1.48099 1.44362 1.29546 1.13205 1.20278 0.80351 0.79458 0.87434 1.90679 1.63325 1.67143 1.18028 1.23552 1.00169 1.03041 1.03328 1.85381 1.52710 1.27168 1.18145 1.22821 1.28706 1.16444 1.00301 0.91034 1.24986 0.96684 0.95935 0.95973 1.70014 1.39666 1.21956 1.18688 0.86237 0.80194 0.78541 0.80603 1.19926 1.20840 1.19971 1.21611 0.91234 0.89607 0.98173 1.21720 0.99009 0.96401 0.94963 0.90678 1.21459 0.96157 1.02124 0.94963 1.21861 1.01351 1.02087 0.96127 0.91865 0.91370 0.91607 0.93916 0.93738 0.93211 0.93651 0.89971 0.93964 0.84264 0.90080 0.91090 0.91871 0.89107 0.89416 0.89308 0.92175 0.88357 0.92240 0.91459 0.91234 0.92895 0.93480 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.37 -3.51 10.29 -35.23 -0.36 -3.87 16 4 C 0.07 0.46 6.22 37.16 0.23 0.69 16 5 C 0.06 0.43 5.87 -3.82 -0.02 0.40 16 6 N -0.67 -5.58 5.49 -106.68 -0.59 -6.16 16 7 C 0.10 0.84 2.15 -67.67 -0.15 0.70 16 8 H 0.04 0.36 7.80 -51.93 -0.40 -0.05 16 9 C -0.12 -1.25 5.25 -26.61 -0.14 -1.39 16 10 C 0.11 1.22 6.33 -3.71 -0.02 1.19 16 11 N -0.62 -8.77 2.34 -172.54 -0.40 -9.17 16 12 C 0.54 10.28 7.72 -10.99 -0.08 10.19 16 13 O -0.52 -11.77 15.30 5.56 0.08 -11.69 16 14 C -0.15 -3.11 4.50 36.01 0.16 -2.94 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.12 1.42 5.71 -3.56 -0.02 1.40 16 25 C -0.10 -0.99 2.05 -90.50 -0.19 -1.17 16 26 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 27 C -0.11 -1.26 4.73 -26.74 -0.13 -1.39 16 28 C -0.16 -1.90 9.68 37.16 0.36 -1.54 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.66 7.42 -51.93 -0.39 0.28 16 37 H 0.04 0.25 8.05 -51.92 -0.42 -0.17 16 38 H 0.34 2.53 8.26 -39.29 -0.32 2.21 16 39 H 0.08 0.99 6.45 -51.93 -0.33 0.65 16 40 H 0.07 0.66 7.43 -51.93 -0.39 0.28 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 43 H 0.09 1.69 7.94 -51.91 -0.41 1.27 16 44 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.10 1.39 5.23 -51.93 -0.27 1.12 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 49 H 0.07 0.77 7.44 -51.93 -0.39 0.38 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.92 6.46 -51.93 -0.34 0.59 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -34.02 416.24 -9.97 -43.99 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -9.30 Total: 0.48 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 0.83 Total: -6.89 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.26 Total: -40.99 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.28 Total: -15.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.02 -9.97 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699602469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.512 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds