Wall clock time and date at job start Wed Apr 1 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.46948 * 2 1 4 4 C 1.42911 * 113.99851 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46774 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47213 * 65.00424 * 5 4 3 7 7 C 1.46904 * 111.00057 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.45425 * 325.02712 * 7 6 5 9 9 C 1.53035 * 109.46112 * 84.99611 * 7 6 5 10 10 C 1.53191 * 109.31327 * 181.37468 * 9 7 6 11 11 N 1.46926 * 108.89109 * 305.29292 * 10 9 7 12 12 C 1.34773 * 120.63302 * 233.67613 * 11 10 9 13 13 O 1.21281 * 120.00152 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99924 * 359.97438 * 12 11 10 15 15 S 1.81001 * 109.47141 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99931 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00168 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31641 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00409 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47025 * 59.99999 * 20 18 16 22 22 H 1.48498 * 109.47497 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47203 * 300.00284 * 20 18 16 24 24 C 1.47207 * 118.55531 * 53.54119 * 11 10 9 25 25 C 1.53038 * 109.44743 * 205.06173 * 7 6 5 26 26 H 1.08996 * 109.50003 * 58.66775 * 25 7 6 27 27 C 1.52995 * 109.49696 * 298.56893 * 25 7 6 28 28 C 1.52995 * 109.47268 * 175.00177 * 27 25 7 29 29 H 1.09002 * 109.47118 * 59.99843 * 1 2 3 30 30 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47331 * 300.00063 * 1 2 3 32 32 H 1.09005 * 109.47058 * 240.00412 * 2 1 3 33 33 H 1.09000 * 109.47624 * 120.00246 * 2 1 3 34 34 H 1.08997 * 109.46790 * 60.00406 * 4 3 2 35 35 H 1.08999 * 109.47071 * 300.00518 * 4 3 2 36 36 H 1.09003 * 109.47483 * 304.99829 * 5 4 3 37 37 H 1.09007 * 109.46654 * 185.00168 * 5 4 3 38 38 H 1.00894 * 111.00146 * 56.04121 * 6 5 4 39 39 H 1.09003 * 109.49576 * 61.42137 * 9 7 6 40 40 H 1.09000 * 109.52700 * 301.34185 * 9 7 6 41 41 H 1.09002 * 109.58786 * 65.15336 * 10 9 7 42 42 H 1.08996 * 109.58870 * 185.43616 * 10 9 7 43 43 H 1.09002 * 109.47628 * 300.00335 * 14 12 11 44 44 H 1.09003 * 109.47142 * 60.00485 * 14 12 11 45 45 H 0.96993 * 119.99621 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.53610 * 186.67231 * 24 11 10 47 47 H 1.09002 * 109.68003 * 66.36699 * 24 11 10 48 48 H 1.09007 * 109.47243 * 295.00397 * 27 25 7 49 49 H 1.09001 * 109.47183 * 55.00228 * 27 25 7 50 50 H 1.09002 * 109.47567 * 179.97438 * 28 27 25 51 51 H 1.08994 * 109.47352 * 299.99925 * 28 27 25 52 52 H 1.08998 * 109.47266 * 60.00354 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 7 3.3856 3.5620 1.2564 7 6 3.7487 4.9851 1.2928 8 1 4.7041 5.1290 0.7880 9 6 2.6687 5.8051 0.5834 10 6 3.0675 7.2842 0.5932 11 7 3.3229 7.6988 1.9794 12 6 2.6927 8.7687 2.5034 13 8 2.9125 9.1011 3.6488 14 6 1.7156 9.5526 1.6656 15 16 1.0423 10.9186 2.6438 16 6 -0.0372 11.6434 1.4546 17 1 -0.1161 11.2164 0.4658 18 6 -0.7862 12.7632 1.7887 19 7 -0.6904 13.2834 2.9941 20 14 -1.9312 13.5312 0.5283 21 1 -2.9469 12.5323 0.1087 22 1 -2.6111 14.7070 1.1287 23 1 -1.1455 13.9650 -0.6548 24 6 4.2789 6.9189 2.7824 25 6 3.8666 5.4438 2.7480 26 1 4.6195 4.8436 3.2588 27 6 2.5166 5.2745 3.4477 28 6 2.6653 5.6148 4.9319 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.3498 3.4417 -0.8407 37 1 4.9082 3.0255 -0.0880 38 1 3.7619 3.0727 2.0545 39 1 1.7182 5.6810 1.1023 40 1 2.5685 5.4622 -0.4464 41 1 3.9699 7.4233 -0.0021 42 1 2.2584 7.8835 0.1758 43 1 2.2264 9.9511 0.7890 44 1 0.9037 8.8987 1.3470 45 1 -1.2136 14.0661 3.2275 46 1 4.2681 7.2774 3.8116 47 1 5.2812 7.0278 2.3680 48 1 1.7854 5.9430 2.9932 49 1 2.1801 4.2430 3.3434 50 1 1.7034 5.4947 5.4304 51 1 3.3964 4.9464 5.3865 52 1 3.0017 6.6463 5.0363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699602469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:31 Heat of formation + Delta-G solvation = -113.909949 kcal Electronic energy + Delta-G solvation = -28781.213831 eV Core-core repulsion = 24905.608886 eV Total energy + Delta-G solvation = -3875.604945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47005 -39.47123 -38.77168 -36.29597 -35.08528 -34.58315 -32.83806 -31.65395 -31.44322 -30.01355 -28.45612 -27.64554 -25.39663 -24.77788 -23.60105 -23.27428 -22.53226 -21.37527 -19.82478 -19.09369 -18.18554 -17.75906 -17.08977 -16.97450 -16.87931 -16.81085 -16.42170 -15.87365 -15.85078 -15.69137 -15.18906 -15.04884 -14.56279 -14.49030 -14.37033 -14.25841 -14.13121 -13.59469 -13.55245 -13.22038 -13.16713 -13.13991 -12.96693 -12.86780 -12.78419 -12.61017 -12.59934 -12.22331 -12.18200 -12.07759 -11.72876 -11.69407 -11.58594 -11.43201 -11.12847 -11.08820 -10.78382 -10.42889 -10.26543 -9.63217 -9.21507 -8.66779 -8.34255 -6.12556 1.25993 1.43694 1.45703 1.55666 1.61956 2.13865 2.27959 2.87418 2.99469 3.15542 3.26743 3.60481 3.72450 3.88071 3.97779 4.12323 4.16828 4.19852 4.23384 4.26072 4.32813 4.41725 4.42097 4.44668 4.51243 4.53691 4.57279 4.59802 4.63249 4.69229 4.73599 4.74311 4.84298 4.89522 4.94296 5.00305 5.04179 5.08249 5.11401 5.24700 5.29953 5.30586 5.41223 5.47678 5.50826 5.64283 6.15045 6.19603 6.33301 6.41770 6.59590 7.06561 7.19153 8.74747 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002363 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.468996 B =11845.524086 C =12996.888010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.400 6.400 4 C 0.063 3.937 5 C 0.062 3.938 6 N -0.683 5.683 7 C 0.104 3.896 8 H 0.061 0.939 9 C -0.116 4.116 10 C 0.102 3.898 11 N -0.601 5.601 12 C 0.534 3.466 13 O -0.564 6.564 14 C -0.124 4.124 15 S -0.150 6.150 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.261 1.261 24 C 0.112 3.888 25 C -0.091 4.091 26 H 0.102 0.898 27 C -0.102 4.102 28 C -0.154 4.154 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.346 0.654 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.035 0.965 49 H 0.077 0.923 50 H 0.042 0.958 51 H 0.071 0.929 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -29.451 -9.387 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.320 6.320 4 C -0.013 4.013 5 C -0.067 4.067 6 N -0.316 5.316 7 C -0.006 4.006 8 H 0.079 0.921 9 C -0.155 4.155 10 C -0.021 4.021 11 N -0.335 5.335 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.275 4.275 15 S 0.078 5.922 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.010 4.010 25 C -0.110 4.110 26 H 0.120 0.880 27 C -0.140 4.140 28 C -0.211 4.211 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.165 0.835 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.061 0.939 51 H 0.090 0.910 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.486 -28.587 -7.815 31.784 hybrid contribution -0.091 0.230 -1.368 1.390 sum 11.395 -28.357 -9.183 31.910 Atomic orbital electron populations 1.21747 0.93898 1.02903 1.02282 1.22547 0.95725 0.83651 1.00455 1.88008 1.21765 1.26776 1.95439 1.22608 0.81313 0.96636 1.00789 1.22046 0.98220 0.93203 0.93221 1.60333 1.65012 1.01729 1.04530 1.21370 0.96660 0.88078 0.94475 0.92089 1.21869 0.99348 0.92601 1.01709 1.21995 1.02816 0.96257 0.81041 1.48073 1.43152 1.27781 1.14508 1.20016 0.80525 0.80620 0.86640 1.90663 1.64991 1.68850 1.19743 1.23364 1.00874 1.00605 1.02623 1.85546 1.53927 1.31069 1.21704 1.23153 1.28870 1.16883 1.00496 0.90066 1.26136 0.98395 0.96363 0.98265 1.70184 1.40888 1.22578 1.21090 0.85009 0.77764 0.77593 0.77665 1.18712 1.20312 1.18565 1.21830 0.91823 0.90570 0.96805 1.21661 0.98359 0.94956 0.96019 0.87952 1.21368 0.96670 1.01627 0.94334 1.21823 1.01416 1.00902 0.96947 0.92688 0.89517 0.92976 0.92699 0.92982 0.91833 0.92749 0.91013 0.91944 0.83488 0.92510 0.89711 0.88991 0.89794 0.87656 0.88130 0.91996 0.90745 0.89610 0.94605 0.90404 0.93894 0.90999 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.40 -6.90 10.29 -148.98 -1.53 -8.43 16 4 C 0.06 0.70 6.22 71.98 0.45 1.15 16 5 C 0.06 0.68 5.87 86.30 0.51 1.19 16 6 N -0.68 -9.31 5.49 -491.42 -2.70 -12.00 16 7 C 0.10 1.51 2.15 44.94 0.10 1.61 16 8 H 0.06 0.73 7.80 -2.39 -0.02 0.71 16 9 C -0.12 -2.13 5.25 30.67 0.16 -1.96 16 10 C 0.10 2.09 6.33 86.36 0.55 2.64 16 11 N -0.60 -16.62 2.34 -818.19 -1.92 -18.54 16 12 C 0.53 20.90 7.72 87.66 0.68 21.58 16 13 O -0.56 -26.94 15.30 -3.03 -0.05 -26.99 16 14 C -0.12 -5.18 4.50 71.24 0.32 -4.86 16 15 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 16 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.76 5.49 84.85 0.47 1.23 16 19 N -0.91 -56.86 13.22 21.65 0.29 -56.58 16 20 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 C 0.11 2.56 5.71 86.31 0.49 3.05 16 25 C -0.09 -1.56 2.05 -10.72 -0.02 -1.58 16 26 H 0.10 1.30 8.10 -2.39 -0.02 1.28 16 27 C -0.10 -2.30 4.73 30.59 0.14 -2.16 16 28 C -0.15 -3.75 9.68 71.98 0.70 -3.06 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.95 7.42 -2.39 -0.02 0.93 16 37 H 0.06 0.46 8.05 -2.38 -0.02 0.44 16 38 H 0.35 4.00 8.26 -89.70 -0.74 3.26 16 39 H 0.06 1.34 6.45 -2.39 -0.02 1.33 16 40 H 0.08 1.35 7.43 -2.39 -0.02 1.34 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.86 5.93 -2.39 -0.01 1.84 16 43 H 0.11 4.01 7.94 -2.39 -0.02 3.99 16 44 H 0.10 3.94 7.69 -2.39 -0.02 3.92 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.07 2.13 5.23 -2.39 -0.01 2.12 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.04 1.03 6.13 -2.38 -0.01 1.02 16 49 H 0.08 1.63 7.44 -2.39 -0.02 1.61 16 50 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 Total: -1.00 -77.95 416.24 1.51 -76.44 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.15 Total: 21.92 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 6.40 Total: -12.43 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -4.33 Total: -87.12 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.58 Total: -35.42 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -77.95 1.51 -76.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699602469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.471 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds