Wall clock time and date at job start Wed Apr 1 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00241 * 2 1 4 4 H 1.09008 * 109.47253 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47521 * 119.99771 * 3 2 1 6 6 C 1.50704 * 109.46991 * 295.00398 * 5 3 2 7 7 O 1.21274 * 120.00072 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99816 * 179.97438 * 6 5 3 9 9 C 1.46497 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47282 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.64338 * 298.31527 * 10 9 8 12 12 C 1.55154 * 110.71880 * 174.97661 * 10 9 8 13 13 C 1.54910 * 101.58031 * 206.13651 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47445 * 59.99771 * 19 17 15 21 21 H 1.48507 * 109.46867 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46918 * 299.99556 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 C 1.50698 * 109.47108 * 240.00195 * 3 2 1 25 25 C 1.38237 * 119.99912 * 299.72291 * 24 3 2 26 26 C 1.38237 * 120.00113 * 179.74689 * 25 24 3 27 27 C 1.38228 * 119.99856 * 0.55110 * 26 25 24 28 28 C 1.38241 * 120.00382 * 359.70396 * 27 26 25 29 29 C 1.38235 * 120.00310 * 120.00151 * 24 3 2 30 30 H 1.07993 * 120.00407 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99622 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99622 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47576 * 174.99668 * 5 3 2 34 34 H 1.09002 * 109.47076 * 54.99838 * 5 3 2 35 35 H 0.97006 * 120.00120 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.46837 * 59.99936 * 9 8 6 37 37 H 1.09000 * 109.47332 * 300.00307 * 9 8 6 38 38 H 0.96694 * 114.00195 * 61.68414 * 11 10 9 39 39 H 1.09002 * 111.00945 * 88.06458 * 12 10 9 40 40 H 1.08999 * 111.00353 * 324.20996 * 12 10 9 41 41 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 42 42 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 43 43 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 45 45 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 46 46 H 1.08003 * 119.99650 * 359.97438 * 25 24 3 47 47 H 1.08007 * 120.00044 * 180.27759 * 26 25 24 48 48 H 1.08005 * 120.00093 * 179.72889 * 27 26 25 49 49 H 1.07992 * 120.00356 * 179.97438 * 28 27 26 50 50 H 1.07997 * 119.99947 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4301 2.4766 7 8 0.8626 1.3999 2.3632 8 7 2.6301 1.5028 3.7002 9 6 1.7811 1.5460 4.8933 10 6 2.6607 1.6257 6.1426 11 8 3.4921 0.4683 6.2480 12 6 1.7914 1.7998 7.4158 13 6 2.7782 2.5170 8.3705 14 7 3.5460 3.4296 7.5038 15 6 4.1828 4.5710 7.9122 16 1 4.7210 5.1746 7.1964 17 6 4.1367 4.9521 9.2461 18 7 3.4803 4.2167 10.1184 19 14 5.0048 6.5096 9.8030 20 1 4.4426 7.6764 9.0769 21 1 4.8049 6.6925 11.2632 22 1 6.4567 6.3980 9.5119 23 6 3.5141 2.9115 6.1283 24 6 2.9299 1.3849 -1.2305 25 6 3.9128 0.4371 -1.4464 26 6 4.7041 0.5073 -2.5777 27 6 4.5200 1.5317 -3.4874 28 6 3.5406 2.4825 -3.2689 29 6 2.7455 2.4090 -2.1404 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 3.5541 2.2878 1.2055 34 1 3.5906 0.5105 1.2952 35 1 3.5956 1.5265 3.7908 36 1 1.1696 0.6448 4.9368 37 1 1.1342 2.4221 4.8474 38 1 4.1082 0.3580 5.5110 39 1 1.4908 0.8328 7.8191 40 1 0.9212 2.4240 7.2124 41 1 3.4428 1.7935 8.8426 42 1 2.2322 3.0815 9.1264 43 1 3.4478 4.4832 11.0504 44 1 3.0624 3.6489 5.4647 45 1 4.5264 2.6835 5.7945 46 1 4.0601 -0.3602 -0.7329 47 1 5.4691 -0.2358 -2.7486 48 1 5.1411 1.5890 -4.3691 49 1 3.3970 3.2830 -3.9794 50 1 1.9804 3.1518 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699907069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:48 Heat of formation + Delta-G solvation = -16.260624 kcal Electronic energy + Delta-G solvation = -29625.262806 eV Core-core repulsion = 25618.448302 eV Total energy + Delta-G solvation = -4006.814504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32352 -39.47659 -38.46287 -35.87748 -35.10638 -34.10599 -32.14023 -31.61997 -31.20055 -30.28081 -29.41473 -28.03206 -25.87780 -24.79490 -23.33315 -22.94605 -21.64933 -20.87055 -20.06138 -19.92593 -19.49683 -17.79251 -17.06592 -16.96352 -16.23835 -15.80234 -15.74703 -15.36187 -15.09598 -14.75285 -14.59992 -14.39067 -13.94159 -13.84501 -13.62860 -13.58699 -13.39251 -13.12273 -12.91338 -12.82947 -12.39435 -12.13071 -12.00064 -11.87017 -11.59819 -11.55036 -11.20114 -11.05449 -10.88073 -10.87300 -10.76479 -10.37253 -10.19510 -10.12218 -9.83240 -9.73709 -9.45547 -9.27971 -9.20155 -9.01684 -8.97301 -8.67047 -6.88228 -5.68215 -3.10851 1.05190 1.11740 2.30256 2.66317 3.12962 3.38430 3.42439 3.44098 3.52075 4.38297 4.42990 4.45561 4.48659 4.70768 4.72036 4.76307 4.83466 4.86503 4.97398 5.13441 5.18211 5.19159 5.22663 5.34798 5.40069 5.44248 5.48140 5.62699 5.65703 5.69981 5.79788 5.86920 5.88448 5.99036 6.17906 6.22071 6.23128 6.35195 6.36737 6.39216 6.48232 6.56091 6.58622 6.62476 6.71857 6.77144 7.44862 7.53681 7.58498 7.82111 7.91929 8.22013 8.32284 9.18026 9.78492 10.42807 11.35417 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.002143 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.542663 B =13063.953680 C =14159.476113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.002 4.002 4 H 0.090 0.910 5 C -0.132 4.132 6 C 0.512 3.488 7 O -0.533 6.533 8 N -0.729 5.729 9 C 0.106 3.894 10 C 0.106 3.894 11 O -0.543 6.543 12 C -0.128 4.128 13 C 0.156 3.844 14 N -0.600 5.600 15 C -0.226 4.226 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.117 3.883 24 C -0.071 4.071 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.114 4.114 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.364 0.636 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.018 0.982 42 H 0.108 0.892 43 H 0.254 0.746 44 H 0.030 0.970 45 H 0.022 0.978 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -8.797 -24.993 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.021 4.021 4 H 0.108 0.892 5 C -0.172 4.172 6 C 0.298 3.702 7 O -0.409 6.409 8 N -0.382 5.382 9 C -0.018 4.018 10 C 0.064 3.936 11 O -0.348 6.348 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.326 5.326 15 C -0.355 4.355 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.746 3.254 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.010 4.010 24 C -0.071 4.071 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.210 0.790 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.789 -8.762 -24.287 25.881 hybrid contribution 1.423 0.826 -0.195 1.657 sum -0.366 -7.936 -24.482 25.739 Atomic orbital electron populations 1.23719 0.95823 1.01538 0.98320 1.22546 0.95935 0.96510 1.02094 1.19056 0.95218 0.97838 0.89972 0.89212 1.21718 0.98590 1.04744 0.92109 1.20551 0.89159 0.76042 0.84415 1.90709 1.14709 1.48907 1.86573 1.46028 1.10414 1.75597 1.06123 1.22035 0.93685 1.02867 0.83170 1.22556 0.90996 0.85648 0.94395 1.86623 1.53584 1.45313 1.49243 1.23046 0.98260 1.00954 0.94444 1.21946 0.91386 0.91203 0.92349 1.44410 1.61010 1.25439 1.01738 1.19005 1.25482 0.98110 0.92870 0.90598 1.24802 1.00754 0.99171 0.95804 1.69779 1.45965 1.38685 1.02431 0.86136 0.79137 0.82525 0.77571 1.21129 1.21499 1.21199 1.21921 0.96220 0.92844 0.90023 1.19804 0.96119 0.95146 0.95997 1.21015 0.95611 0.98774 0.97712 1.21149 0.99522 0.98462 0.94581 1.21152 0.98505 0.95242 0.99508 1.21149 0.95962 0.99016 0.97533 1.21104 0.99712 0.98077 0.94356 0.88956 0.88468 0.87865 0.88481 0.88694 0.76866 0.90902 0.90456 0.79018 0.91101 0.90604 0.96388 0.87422 0.93567 0.95221 0.96005 0.86091 0.86135 0.86274 0.86125 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 13.22 29.01 0.38 -1.25 16 2 C -0.15 -1.50 7.42 -36.03 -0.27 -1.77 16 3 C 0.00 -0.02 1.99 -92.93 -0.18 -0.20 16 4 H 0.09 0.93 7.33 -51.92 -0.38 0.55 16 5 C -0.13 -1.14 4.90 -27.88 -0.14 -1.28 16 6 C 0.51 6.16 7.58 -10.98 -0.08 6.07 16 7 O -0.53 -8.15 14.17 5.56 0.08 -8.07 16 8 N -0.73 -8.53 5.17 -60.30 -0.31 -8.84 16 9 C 0.11 1.53 4.73 -4.04 -0.02 1.52 16 10 C 0.11 1.78 0.92 -88.79 -0.08 1.70 16 11 O -0.54 -8.87 13.10 -35.23 -0.46 -9.33 16 12 C -0.13 -2.45 6.26 -24.58 -0.15 -2.61 16 13 C 0.16 3.82 5.88 -2.53 -0.01 3.80 16 14 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 15 C -0.23 -6.27 10.27 -15.06 -0.15 -6.43 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 19 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.12 2.32 6.02 -3.07 -0.02 2.30 16 24 C -0.07 -0.61 4.77 -104.62 -0.50 -1.11 16 25 C -0.11 -0.89 8.87 -39.58 -0.35 -1.24 16 26 C -0.12 -0.88 10.05 -39.59 -0.40 -1.27 16 27 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 28 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 29 C -0.11 -0.96 9.67 -39.58 -0.38 -1.35 16 30 H 0.09 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.10 1.07 7.83 -52.48 -0.41 0.66 16 32 H 0.10 0.91 8.05 -52.48 -0.42 0.48 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.65 7.55 -51.93 -0.39 0.26 16 35 H 0.40 3.80 7.38 -40.82 -0.30 3.50 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.36 4.35 8.12 45.56 0.37 4.72 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 45 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 46 H 0.12 0.79 7.62 -52.48 -0.40 0.39 16 47 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -33.35 405.62 -10.13 -43.48 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.25 Total: 7.86 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.25 Total: -6.09 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.33 Total: -50.87 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.38 Total: -17.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.35 -10.13 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.221 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds