Wall clock time and date at job start Wed Apr 1 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00241 * 2 1 4 4 H 1.09008 * 109.47253 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47521 * 119.99771 * 3 2 1 6 6 C 1.50704 * 109.46991 * 295.00398 * 5 3 2 7 7 O 1.21274 * 120.00072 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99816 * 179.97438 * 6 5 3 9 9 C 1.46497 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47282 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.64338 * 298.31527 * 10 9 8 12 12 C 1.55154 * 110.71880 * 174.97661 * 10 9 8 13 13 C 1.54910 * 101.58031 * 206.13651 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47445 * 59.99771 * 19 17 15 21 21 H 1.48507 * 109.46867 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46918 * 299.99556 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 C 1.50698 * 109.47108 * 240.00195 * 3 2 1 25 25 C 1.38237 * 119.99912 * 299.72291 * 24 3 2 26 26 C 1.38237 * 120.00113 * 179.74689 * 25 24 3 27 27 C 1.38228 * 119.99856 * 0.55110 * 26 25 24 28 28 C 1.38241 * 120.00382 * 359.70396 * 27 26 25 29 29 C 1.38235 * 120.00310 * 120.00151 * 24 3 2 30 30 H 1.07993 * 120.00407 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99622 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99622 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47576 * 174.99668 * 5 3 2 34 34 H 1.09002 * 109.47076 * 54.99838 * 5 3 2 35 35 H 0.97006 * 120.00120 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.46837 * 59.99936 * 9 8 6 37 37 H 1.09000 * 109.47332 * 300.00307 * 9 8 6 38 38 H 0.96694 * 114.00195 * 61.68414 * 11 10 9 39 39 H 1.09002 * 111.00945 * 88.06458 * 12 10 9 40 40 H 1.08999 * 111.00353 * 324.20996 * 12 10 9 41 41 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 42 42 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 43 43 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 45 45 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 46 46 H 1.08003 * 119.99650 * 359.97438 * 25 24 3 47 47 H 1.08007 * 120.00044 * 180.27759 * 26 25 24 48 48 H 1.08005 * 120.00093 * 179.72889 * 27 26 25 49 49 H 1.07992 * 120.00356 * 179.97438 * 28 27 26 50 50 H 1.07997 * 119.99947 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4301 2.4766 7 8 0.8626 1.3999 2.3632 8 7 2.6301 1.5028 3.7002 9 6 1.7811 1.5460 4.8933 10 6 2.6607 1.6257 6.1426 11 8 3.4921 0.4683 6.2480 12 6 1.7914 1.7998 7.4158 13 6 2.7782 2.5170 8.3705 14 7 3.5460 3.4296 7.5038 15 6 4.1828 4.5710 7.9122 16 1 4.7210 5.1746 7.1964 17 6 4.1367 4.9521 9.2461 18 7 3.4803 4.2167 10.1184 19 14 5.0048 6.5096 9.8030 20 1 4.4426 7.6764 9.0769 21 1 4.8049 6.6925 11.2632 22 1 6.4567 6.3980 9.5119 23 6 3.5141 2.9115 6.1283 24 6 2.9299 1.3849 -1.2305 25 6 3.9128 0.4371 -1.4464 26 6 4.7041 0.5073 -2.5777 27 6 4.5200 1.5317 -3.4874 28 6 3.5406 2.4825 -3.2689 29 6 2.7455 2.4090 -2.1404 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 3.5541 2.2878 1.2055 34 1 3.5906 0.5105 1.2952 35 1 3.5956 1.5265 3.7908 36 1 1.1696 0.6448 4.9368 37 1 1.1342 2.4221 4.8474 38 1 4.1082 0.3580 5.5110 39 1 1.4908 0.8328 7.8191 40 1 0.9212 2.4240 7.2124 41 1 3.4428 1.7935 8.8426 42 1 2.2322 3.0815 9.1264 43 1 3.4478 4.4832 11.0504 44 1 3.0624 3.6489 5.4647 45 1 4.5264 2.6835 5.7945 46 1 4.0601 -0.3602 -0.7329 47 1 5.4691 -0.2358 -2.7486 48 1 5.1411 1.5890 -4.3691 49 1 3.3970 3.2830 -3.9794 50 1 1.9804 3.1518 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699907069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:47 Heat of formation + Delta-G solvation = -37.847985 kcal Electronic energy + Delta-G solvation = -29626.198904 eV Core-core repulsion = 25618.448302 eV Total energy + Delta-G solvation = -4007.750602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24777 -40.38495 -39.66657 -36.90999 -36.46730 -35.21541 -33.99563 -32.36036 -31.74803 -31.50072 -30.76487 -29.41817 -27.48294 -25.94835 -24.67955 -23.52737 -22.43175 -22.21808 -21.39011 -21.33763 -20.26391 -18.96403 -18.68752 -17.89858 -17.25716 -16.84633 -16.75064 -16.62327 -16.14165 -15.91751 -15.68019 -15.55084 -15.34006 -14.96556 -14.68987 -14.52686 -14.34412 -14.15747 -13.95559 -13.90082 -13.67327 -13.40133 -13.29690 -12.96705 -12.81486 -12.73430 -12.54925 -12.35981 -12.15143 -12.10366 -12.04894 -11.80390 -11.76409 -11.60615 -11.53667 -10.98474 -10.83062 -10.73733 -10.17076 -9.99995 -9.75604 -9.55731 -8.91419 -7.78165 -5.23410 0.47964 0.56374 1.46519 1.49761 1.53620 1.56199 1.73670 2.16947 2.48604 2.94799 3.15817 3.31647 3.45450 3.67352 3.74236 3.76927 3.93081 3.96286 4.03804 4.14317 4.20363 4.29517 4.35163 4.41722 4.48757 4.55161 4.59743 4.68201 4.68856 4.77019 4.79105 4.81933 4.95416 4.98590 4.99065 5.09257 5.10886 5.16743 5.24134 5.39439 5.45197 5.60297 5.63355 5.69400 5.76744 5.78836 5.79694 6.01871 6.18178 6.28389 6.54206 6.80481 7.08515 7.29590 7.75869 8.39584 9.23676 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.002143 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.542663 B =13063.953680 C =14159.476113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.150 4.150 3 C 0.002 3.998 4 H 0.071 0.929 5 C -0.123 4.123 6 C 0.511 3.489 7 O -0.568 6.568 8 N -0.721 5.721 9 C 0.123 3.877 10 C 0.127 3.873 11 O -0.554 6.554 12 C -0.121 4.121 13 C 0.160 3.840 14 N -0.623 5.623 15 C -0.241 4.241 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.277 1.277 23 C 0.113 3.887 24 C -0.079 4.079 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.131 4.131 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.385 0.615 39 H 0.085 0.915 40 H 0.084 0.916 41 H -0.015 1.015 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.134 0.866 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -9.375 -27.191 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C -0.017 4.017 4 H 0.089 0.911 5 C -0.163 4.163 6 C 0.299 3.701 7 O -0.446 6.446 8 N -0.375 5.375 9 C -0.002 4.002 10 C 0.085 3.915 11 O -0.361 6.361 12 C -0.160 4.160 13 C 0.035 3.965 14 N -0.349 5.349 15 C -0.370 4.370 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.203 1.203 23 C -0.012 4.012 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.146 4.146 29 C -0.149 4.149 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.235 0.765 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.003 0.997 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.154 0.846 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.152 0.848 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.209 -9.351 -26.540 28.139 hybrid contribution 0.978 0.979 0.417 1.445 sum 0.769 -8.372 -26.122 27.442 Atomic orbital electron populations 1.23762 0.96392 1.01339 0.99726 1.22762 0.95821 0.97363 1.00806 1.18962 0.95076 0.96871 0.90774 0.91096 1.21734 0.98114 1.06651 0.89782 1.21129 0.89051 0.74882 0.85059 1.90710 1.16467 1.50417 1.87024 1.45906 1.10851 1.75410 1.05305 1.21662 0.93161 1.02442 0.82980 1.22179 0.90344 0.84637 0.94328 1.86589 1.54180 1.44492 1.50871 1.22898 0.97545 1.01094 0.94476 1.21654 0.91468 0.90369 0.93045 1.44703 1.60998 1.25205 1.04041 1.19420 1.25284 0.99000 0.93268 0.89908 1.25676 1.01972 1.02349 0.96094 1.70043 1.47360 1.40238 1.02237 0.85102 0.78272 0.79055 0.76583 1.20188 1.22059 1.20341 1.22130 0.97582 0.94191 0.87326 1.19764 0.96583 0.95798 0.95808 1.21218 0.95296 0.98837 0.98310 1.21453 0.99770 0.98821 0.94283 1.21464 0.98442 0.94971 1.00173 1.21390 0.95946 0.99682 0.97560 1.21268 1.00243 0.98460 0.94975 0.88183 0.89842 0.86410 0.87051 0.86036 0.75334 0.90746 0.91593 0.76543 0.89693 0.89713 0.99700 0.90757 0.94286 0.94677 0.94575 0.84612 0.84216 0.84458 0.84761 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 13.22 67.78 0.90 -2.72 16 2 C -0.15 -2.74 7.42 25.65 0.19 -2.55 16 3 C 0.00 0.04 1.99 -12.29 -0.02 0.01 16 4 H 0.07 1.48 7.33 -2.38 -0.02 1.46 16 5 C -0.12 -1.81 4.90 29.85 0.15 -1.67 16 6 C 0.51 11.22 7.58 87.66 0.66 11.89 16 7 O -0.57 -16.82 14.17 -3.01 -0.04 -16.86 16 8 N -0.72 -14.98 5.17 -463.07 -2.40 -17.37 16 9 C 0.12 3.29 4.73 86.38 0.41 3.69 16 10 C 0.13 4.06 0.92 -9.61 -0.01 4.05 16 11 O -0.55 -16.77 13.10 -148.98 -1.95 -18.72 16 12 C -0.12 -4.59 6.26 31.99 0.20 -4.39 16 13 C 0.16 8.03 5.88 86.86 0.51 8.54 16 14 N -0.62 -31.80 3.39 -691.99 -2.35 -34.15 16 15 C -0.24 -13.40 10.27 84.03 0.86 -12.53 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 18 N -0.95 -56.93 10.09 21.65 0.22 -56.71 16 19 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C 0.11 4.34 6.02 86.73 0.52 4.86 16 24 C -0.08 -1.24 4.77 -19.87 -0.09 -1.34 16 25 C -0.12 -1.56 8.87 22.27 0.20 -1.36 16 26 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 27 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 28 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 29 C -0.13 -2.09 9.67 22.27 0.22 -1.87 16 30 H 0.10 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.08 1.91 7.83 -2.91 -0.02 1.89 16 32 H 0.12 1.78 8.05 -2.91 -0.02 1.76 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 1.18 7.55 -2.39 -0.02 1.16 16 35 H 0.41 6.44 7.38 -92.70 -0.68 5.75 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 38 H 0.39 7.93 8.12 -74.06 -0.60 7.33 16 39 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 41 H -0.02 -0.84 8.14 -2.39 -0.02 -0.85 16 42 H 0.07 4.24 5.87 -2.38 -0.01 4.22 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 44 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 45 H 0.04 1.30 8.06 -2.38 -0.02 1.28 16 46 H 0.14 1.29 7.62 -2.91 -0.02 1.27 16 47 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 48 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 49 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 50 H 0.12 1.80 7.95 -2.91 -0.02 1.78 16 Total: -1.00 -73.68 405.62 0.98 -72.70 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.35 Total: 26.67 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.82 Total: -3.02 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -4.53 Total: -108.23 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.99 Total: -35.59 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.68 0.98 -72.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.853 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds