Wall clock time and date at job start Wed Apr 1 2020 03:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99798 * 2 1 4 4 H 1.08992 * 109.47130 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47211 * 120.00081 * 3 2 1 6 6 C 1.50705 * 109.47016 * 295.00083 * 5 3 2 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99794 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99683 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46905 * 179.97438 * 9 8 6 11 11 O 1.42907 * 110.88261 * 67.42627 * 10 9 8 12 12 C 1.55155 * 111.00233 * 191.34860 * 10 9 8 13 13 C 1.54337 * 103.02124 * 153.38273 * 12 10 9 14 14 N 1.47022 * 107.26372 * 338.14006 * 13 12 10 15 15 C 1.36932 * 125.64698 * 178.85099 * 14 13 12 16 16 H 1.08004 * 119.99606 * 169.55960 * 15 14 13 17 17 C 1.38807 * 120.00167 * 349.56117 * 15 14 13 18 18 N 1.31621 * 120.00288 * 152.80040 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 332.79751 * 17 15 14 20 20 H 1.48505 * 109.46890 * 85.29216 * 19 17 15 21 21 H 1.48497 * 109.47733 * 205.29476 * 19 17 15 22 22 H 1.48506 * 109.47292 * 325.29549 * 19 17 15 23 23 C 1.47432 * 108.70275 * 358.58536 * 14 13 12 24 24 C 1.50700 * 109.46790 * 239.99780 * 3 2 1 25 25 C 1.38235 * 120.00160 * 299.72622 * 24 3 2 26 26 C 1.38238 * 119.99924 * 179.74495 * 25 24 3 27 27 C 1.38233 * 119.99910 * 0.53083 * 26 25 24 28 28 C 1.38234 * 119.99991 * 359.74352 * 27 26 25 29 29 C 1.38233 * 119.99829 * 120.00199 * 24 3 2 30 30 H 1.07997 * 119.99855 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00109 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00109 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47223 * 174.99507 * 5 3 2 34 34 H 1.09004 * 109.47433 * 54.99517 * 5 3 2 35 35 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.47024 * 59.99387 * 9 8 6 37 37 H 1.09004 * 109.46720 * 299.99713 * 9 8 6 38 38 H 0.96695 * 114.00060 * 297.56743 * 11 10 9 39 39 H 1.09008 * 110.71923 * 271.94001 * 12 10 9 40 40 H 1.08994 * 110.72383 * 35.03408 * 12 10 9 41 41 H 1.08997 * 109.99116 * 218.66767 * 13 12 10 42 42 H 1.09002 * 109.77782 * 97.49100 * 13 12 10 43 43 H 0.97001 * 119.99981 * 5.04665 * 18 17 15 44 44 H 1.08995 * 110.36373 * 143.19582 * 23 14 13 45 45 H 1.09002 * 110.36426 * 265.51652 * 23 14 13 46 46 H 1.07996 * 120.00065 * 0.02562 * 25 24 3 47 47 H 1.08000 * 119.99939 * 180.29657 * 26 25 24 48 48 H 1.08002 * 119.99893 * 179.76955 * 27 26 25 49 49 H 1.08007 * 119.99770 * 179.97438 * 28 27 26 50 50 H 1.08001 * 119.99999 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3863 1.2492 6 6 2.0697 1.4301 2.4766 7 8 0.8626 1.4000 2.3632 8 7 2.6301 1.5038 3.7001 9 6 1.7810 1.5470 4.8932 10 6 2.6607 1.6280 6.1425 11 8 3.3479 2.8796 6.2013 12 6 1.8245 1.3906 7.4277 13 6 2.8649 0.8314 8.4211 14 7 3.9747 0.2830 7.6279 15 6 5.1116 -0.2880 8.1343 16 1 5.7910 -0.8120 7.4782 17 6 5.3910 -0.1935 9.4906 18 7 6.1173 -1.1200 10.0792 19 14 4.7361 1.2488 10.4808 20 1 3.3552 0.9494 10.9375 21 1 5.6091 1.4767 11.6603 22 1 4.7234 2.4671 9.6317 23 6 3.6579 0.4438 6.1971 24 6 2.9299 1.3849 -1.2305 25 6 3.9128 0.4372 -1.4463 26 6 4.7041 0.5074 -2.5777 27 6 4.5196 1.5316 -3.4876 28 6 3.5404 2.4825 -3.2689 29 6 2.7454 2.4091 -2.1404 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5540 2.2879 1.2055 34 1 3.5906 0.5106 1.2952 35 1 3.5955 1.5283 3.7907 36 1 1.1701 0.6454 4.9372 37 1 1.1336 2.4227 4.8469 38 1 3.9580 3.0283 5.4660 39 1 1.4041 2.3278 7.7928 40 1 1.0357 0.6609 7.2453 41 1 2.4166 0.0432 9.0258 42 1 3.2293 1.6329 9.0637 43 1 6.5184 -1.8291 9.5526 44 1 4.5599 0.6812 5.6332 45 1 3.1931 -0.4618 5.8073 46 1 4.0596 -0.3606 -0.7334 47 1 5.4688 -0.2357 -2.7487 48 1 5.1403 1.5885 -4.3697 49 1 3.3967 3.2829 -3.9797 50 1 1.9802 3.1518 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699907071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:57 Heat of formation + Delta-G solvation = -12.121686 kcal Electronic energy + Delta-G solvation = -29773.515077 eV Core-core repulsion = 25766.880051 eV Total energy + Delta-G solvation = -4006.635026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.38817 -39.56052 -38.66220 -35.94986 -35.28214 -34.22274 -32.37656 -31.66684 -31.22511 -30.48305 -29.67479 -28.46118 -26.15056 -24.69200 -23.11966 -22.93209 -21.67151 -21.11522 -20.39252 -20.11363 -19.53827 -17.82579 -17.43960 -17.09433 -16.37694 -16.01827 -15.79227 -15.56024 -15.17874 -15.00104 -14.75860 -14.48780 -14.30603 -13.85527 -13.64821 -13.57932 -13.51923 -13.35207 -13.06165 -12.90373 -12.79648 -12.34283 -11.97931 -11.93260 -11.90760 -11.57211 -11.33976 -11.23175 -11.09314 -11.02599 -10.90424 -10.72695 -10.38338 -10.01110 -9.74980 -9.56043 -9.35188 -9.22549 -9.16450 -9.09622 -9.00086 -8.43063 -7.12571 -6.35476 -3.20747 1.02581 1.09378 2.27519 2.58539 3.04225 3.43968 3.49322 3.56343 3.73099 4.29364 4.35035 4.42561 4.59853 4.60806 4.68235 4.70123 4.72527 4.82004 4.88674 4.93129 5.09414 5.10651 5.14733 5.17791 5.20386 5.31381 5.38583 5.47671 5.59723 5.62704 5.67529 5.70879 5.76539 5.81689 5.84695 6.03218 6.10368 6.15662 6.21072 6.23354 6.32082 6.33330 6.36693 6.54035 6.56067 6.69253 6.74332 6.74629 7.36436 7.63737 7.81993 8.13538 8.30907 9.00423 9.56299 10.22415 11.12737 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.002182 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.977545 B =12828.512483 C =13509.075753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.001 4.001 4 H 0.089 0.911 5 C -0.132 4.132 6 C 0.513 3.487 7 O -0.533 6.533 8 N -0.730 5.730 9 C 0.107 3.893 10 C 0.099 3.901 11 O -0.539 6.539 12 C -0.112 4.112 13 C 0.120 3.880 14 N -0.602 5.602 15 C -0.333 4.333 16 H 0.075 0.925 17 C -0.018 4.018 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.294 1.294 21 H -0.301 1.301 22 H -0.288 1.288 23 C 0.116 3.884 24 C -0.071 4.071 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.115 4.115 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.368 0.632 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.043 0.957 45 H 0.033 0.967 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 6.630 -26.311 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.020 4.020 4 H 0.107 0.893 5 C -0.172 4.172 6 C 0.299 3.701 7 O -0.409 6.409 8 N -0.383 5.383 9 C -0.018 4.018 10 C 0.056 3.944 11 O -0.343 6.343 12 C -0.150 4.150 13 C -0.005 4.005 14 N -0.330 5.330 15 C -0.460 4.460 16 H 0.093 0.907 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.901 3.099 20 H -0.222 1.222 21 H -0.229 1.229 22 H -0.216 1.216 23 C -0.010 4.010 24 C -0.071 4.071 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.137 4.137 29 C -0.133 4.133 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.234 0.766 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.215 0.785 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.518 7.240 -24.256 26.709 hybrid contribution 1.032 -0.723 -2.019 2.380 sum -7.486 6.517 -26.276 28.088 Atomic orbital electron populations 1.23711 0.95801 1.01519 0.98385 1.22569 0.95967 0.96579 1.02022 1.19048 0.95164 0.97806 0.89967 0.89270 1.21725 0.98605 1.04824 0.92057 1.20567 0.89152 0.75940 0.84416 1.90711 1.14701 1.48893 1.86605 1.46038 1.10516 1.75710 1.05997 1.21957 0.93547 1.02960 0.83304 1.22730 0.92736 0.85280 0.93637 1.86600 1.60160 1.36326 1.51252 1.22559 0.97355 1.01410 0.93690 1.21642 0.88411 0.96401 0.94069 1.44674 1.18041 1.71152 0.99084 1.19971 1.00428 1.30905 0.94687 0.90700 1.25800 1.00165 1.01788 0.94110 1.70944 1.36670 1.11871 1.36153 0.83743 0.74780 0.76464 0.74909 1.22183 1.22880 1.21592 1.22216 0.95694 0.94366 0.88763 1.19798 0.96143 0.95188 0.96021 1.21037 0.95545 0.98758 0.97730 1.21166 0.99503 0.98446 0.94529 1.21158 0.98496 0.95217 0.99495 1.21143 0.95998 0.99043 0.97526 1.21085 0.99715 0.98100 0.94403 0.88917 0.88519 0.87784 0.88527 0.88546 0.76648 0.90445 0.90735 0.78515 0.90210 0.89858 0.94017 0.94944 0.92730 0.93851 0.94914 0.86028 0.86075 0.86248 0.86140 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 13.22 29.02 0.38 -1.23 16 2 C -0.15 -1.50 7.42 -36.02 -0.27 -1.77 16 3 C 0.00 -0.01 1.99 -92.92 -0.18 -0.19 16 4 H 0.09 0.87 7.33 -51.93 -0.38 0.49 16 5 C -0.13 -1.10 4.90 -27.88 -0.14 -1.23 16 6 C 0.51 5.81 7.58 -10.98 -0.08 5.72 16 7 O -0.53 -7.69 14.17 5.55 0.08 -7.61 16 8 N -0.73 -7.94 5.19 -60.29 -0.31 -8.26 16 9 C 0.11 1.38 4.97 -4.04 -0.02 1.36 16 10 C 0.10 1.53 0.95 -88.47 -0.08 1.45 16 11 O -0.54 -8.62 13.18 -35.23 -0.46 -9.08 16 12 C -0.11 -1.88 6.16 -24.89 -0.15 -2.03 16 13 C 0.12 2.64 5.00 -3.06 -0.02 2.62 16 14 N -0.60 -14.60 3.28 -170.07 -0.56 -15.15 16 15 C -0.33 -9.47 10.43 -15.06 -0.16 -9.63 16 16 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 17 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 18 N -0.92 -28.65 13.70 55.49 0.76 -27.89 16 19 Si 1.07 27.31 24.69 -169.99 -4.20 23.11 16 20 H -0.29 -7.09 6.80 56.52 0.38 -6.71 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.29 -7.21 6.75 56.52 0.38 -6.82 16 23 C 0.12 2.17 5.74 -2.53 -0.01 2.16 16 24 C -0.07 -0.60 4.77 -104.62 -0.50 -1.10 16 25 C -0.11 -0.90 8.87 -39.58 -0.35 -1.25 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 29 C -0.12 -0.92 9.67 -39.58 -0.38 -1.30 16 30 H 0.09 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.10 1.02 7.83 -52.49 -0.41 0.61 16 32 H 0.10 0.95 8.05 -52.49 -0.42 0.52 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.69 7.56 -51.93 -0.39 0.30 16 35 H 0.40 3.66 7.31 -40.82 -0.30 3.36 16 36 H 0.08 1.05 8.00 -51.93 -0.42 0.63 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.37 4.43 8.57 45.56 0.39 4.82 16 39 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 40 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.04 0.95 7.97 -51.93 -0.41 0.54 16 42 H 0.03 0.78 3.59 -51.93 -0.19 0.59 16 43 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 44 H 0.04 0.77 7.80 -51.93 -0.41 0.36 16 45 H 0.03 0.61 8.04 -51.93 -0.42 0.20 16 46 H 0.12 0.84 7.62 -52.49 -0.40 0.44 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 50 H 0.12 0.82 7.95 -52.49 -0.42 0.41 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -35.20 401.10 -9.06 -44.26 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.15 Total: 5.46 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.25 Total: -10.88 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.11 Total: -51.30 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.39 Total: -16.70 kcal Atomic # 14 Polarization: 27.31 SS G_CDS: -4.20 Total: 23.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.20 -9.06 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.136 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds