Wall clock time and date at job start Wed Apr 1 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99798 * 2 1 4 4 H 1.08992 * 109.47130 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47211 * 120.00081 * 3 2 1 6 6 C 1.50705 * 109.47016 * 295.00083 * 5 3 2 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99794 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99683 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46905 * 179.97438 * 9 8 6 11 11 O 1.42907 * 110.88261 * 67.42627 * 10 9 8 12 12 C 1.55155 * 111.00233 * 191.34860 * 10 9 8 13 13 C 1.54337 * 103.02124 * 153.38273 * 12 10 9 14 14 N 1.47022 * 107.26372 * 338.14006 * 13 12 10 15 15 C 1.36932 * 125.64698 * 178.85099 * 14 13 12 16 16 H 1.08004 * 119.99606 * 169.55960 * 15 14 13 17 17 C 1.38807 * 120.00167 * 349.56117 * 15 14 13 18 18 N 1.31621 * 120.00288 * 152.80040 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 332.79751 * 17 15 14 20 20 H 1.48505 * 109.46890 * 85.29216 * 19 17 15 21 21 H 1.48497 * 109.47733 * 205.29476 * 19 17 15 22 22 H 1.48506 * 109.47292 * 325.29549 * 19 17 15 23 23 C 1.47432 * 108.70275 * 358.58536 * 14 13 12 24 24 C 1.50700 * 109.46790 * 239.99780 * 3 2 1 25 25 C 1.38235 * 120.00160 * 299.72622 * 24 3 2 26 26 C 1.38238 * 119.99924 * 179.74495 * 25 24 3 27 27 C 1.38233 * 119.99910 * 0.53083 * 26 25 24 28 28 C 1.38234 * 119.99991 * 359.74352 * 27 26 25 29 29 C 1.38233 * 119.99829 * 120.00199 * 24 3 2 30 30 H 1.07997 * 119.99855 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00109 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00109 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47223 * 174.99507 * 5 3 2 34 34 H 1.09004 * 109.47433 * 54.99517 * 5 3 2 35 35 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.47024 * 59.99387 * 9 8 6 37 37 H 1.09004 * 109.46720 * 299.99713 * 9 8 6 38 38 H 0.96695 * 114.00060 * 297.56743 * 11 10 9 39 39 H 1.09008 * 110.71923 * 271.94001 * 12 10 9 40 40 H 1.08994 * 110.72383 * 35.03408 * 12 10 9 41 41 H 1.08997 * 109.99116 * 218.66767 * 13 12 10 42 42 H 1.09002 * 109.77782 * 97.49100 * 13 12 10 43 43 H 0.97001 * 119.99981 * 5.04665 * 18 17 15 44 44 H 1.08995 * 110.36373 * 143.19582 * 23 14 13 45 45 H 1.09002 * 110.36426 * 265.51652 * 23 14 13 46 46 H 1.07996 * 120.00065 * 0.02562 * 25 24 3 47 47 H 1.08000 * 119.99939 * 180.29657 * 26 25 24 48 48 H 1.08002 * 119.99893 * 179.76955 * 27 26 25 49 49 H 1.08007 * 119.99770 * 179.97438 * 28 27 26 50 50 H 1.08001 * 119.99999 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3863 1.2492 6 6 2.0697 1.4301 2.4766 7 8 0.8626 1.4000 2.3632 8 7 2.6301 1.5038 3.7001 9 6 1.7810 1.5470 4.8932 10 6 2.6607 1.6280 6.1425 11 8 3.3479 2.8796 6.2013 12 6 1.8245 1.3906 7.4277 13 6 2.8649 0.8314 8.4211 14 7 3.9747 0.2830 7.6279 15 6 5.1116 -0.2880 8.1343 16 1 5.7910 -0.8120 7.4782 17 6 5.3910 -0.1935 9.4906 18 7 6.1173 -1.1200 10.0792 19 14 4.7361 1.2488 10.4808 20 1 3.3552 0.9494 10.9375 21 1 5.6091 1.4767 11.6603 22 1 4.7234 2.4671 9.6317 23 6 3.6579 0.4438 6.1971 24 6 2.9299 1.3849 -1.2305 25 6 3.9128 0.4372 -1.4463 26 6 4.7041 0.5074 -2.5777 27 6 4.5196 1.5316 -3.4876 28 6 3.5404 2.4825 -3.2689 29 6 2.7454 2.4091 -2.1404 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5540 2.2879 1.2055 34 1 3.5906 0.5106 1.2952 35 1 3.5955 1.5283 3.7907 36 1 1.1701 0.6454 4.9372 37 1 1.1336 2.4227 4.8469 38 1 3.9580 3.0283 5.4660 39 1 1.4041 2.3278 7.7928 40 1 1.0357 0.6609 7.2453 41 1 2.4166 0.0432 9.0258 42 1 3.2293 1.6329 9.0637 43 1 6.5184 -1.8291 9.5526 44 1 4.5599 0.6812 5.6332 45 1 3.1931 -0.4618 5.8073 46 1 4.0596 -0.3606 -0.7334 47 1 5.4688 -0.2357 -2.7487 48 1 5.1403 1.5885 -4.3697 49 1 3.3967 3.2829 -3.9797 50 1 1.9802 3.1518 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699907071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:56 Heat of formation + Delta-G solvation = -36.867953 kcal Electronic energy + Delta-G solvation = -29774.588156 eV Core-core repulsion = 25766.880051 eV Total energy + Delta-G solvation = -4007.708105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27359 -40.45990 -39.74481 -37.01077 -36.49137 -35.25026 -34.35851 -32.40890 -31.81042 -31.72037 -30.82289 -29.75704 -27.53736 -25.73919 -24.49695 -23.54426 -22.75433 -22.28359 -21.52193 -21.39609 -20.28142 -19.51846 -18.66366 -17.95407 -17.45229 -17.11298 -16.68616 -16.64355 -16.28716 -15.94267 -15.91294 -15.67426 -15.34716 -15.22426 -14.88828 -14.64928 -14.41968 -14.32617 -14.17164 -14.00562 -13.52029 -13.41480 -13.31683 -13.07928 -13.03992 -12.82796 -12.63144 -12.57058 -12.24017 -12.16720 -11.91086 -11.81820 -11.66679 -11.55876 -11.15504 -11.06007 -10.86692 -10.57215 -10.17982 -10.01569 -9.77521 -9.57599 -9.16900 -8.64486 -5.42461 0.46107 0.54451 1.39438 1.51498 1.51656 1.71352 1.71958 2.15657 2.49739 2.92852 2.97788 3.15364 3.26170 3.51993 3.70042 3.71243 3.75811 3.83959 4.01590 4.12687 4.18369 4.25768 4.27481 4.33464 4.36680 4.42716 4.51057 4.60338 4.66580 4.70770 4.71748 4.76980 4.79296 4.82894 4.91160 4.97204 5.05250 5.09199 5.13570 5.15187 5.22224 5.39237 5.55859 5.61702 5.67721 5.74681 5.78481 5.98973 6.09895 6.16295 6.51524 6.74656 6.81944 7.27096 7.47114 8.11301 8.84225 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.002182 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.977545 B =12828.512483 C =13509.075753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.154 4.154 3 C 0.004 3.996 4 H 0.077 0.923 5 C -0.126 4.126 6 C 0.512 3.488 7 O -0.565 6.565 8 N -0.724 5.724 9 C 0.121 3.879 10 C 0.118 3.882 11 O -0.554 6.554 12 C -0.108 4.108 13 C 0.108 3.892 14 N -0.625 5.625 15 C -0.318 4.318 16 H 0.050 0.950 17 C -0.075 4.075 18 N -0.953 5.953 19 Si 1.110 2.890 20 H -0.274 1.274 21 H -0.307 1.307 22 H -0.279 1.279 23 C 0.111 3.889 24 C -0.080 4.080 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.128 4.128 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.029 0.971 42 H 0.021 0.979 43 H 0.250 0.750 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.130 0.870 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 8.047 -28.104 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C -0.014 4.014 4 H 0.095 0.905 5 C -0.165 4.165 6 C 0.300 3.700 7 O -0.443 6.443 8 N -0.378 5.378 9 C -0.004 4.004 10 C 0.076 3.924 11 O -0.361 6.361 12 C -0.146 4.146 13 C -0.016 4.016 14 N -0.352 5.352 15 C -0.446 4.446 16 H 0.068 0.932 17 C -0.270 4.270 18 N -0.596 5.596 19 Si 0.939 3.061 20 H -0.201 1.201 21 H -0.236 1.236 22 H -0.206 1.206 23 C -0.014 4.014 24 C -0.080 4.080 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.146 4.146 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.148 0.852 47 H 0.154 0.846 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.258 8.671 -26.106 29.024 hybrid contribution 1.291 -1.205 -1.616 2.394 sum -7.967 7.466 -27.722 29.794 Atomic orbital electron populations 1.23762 0.96233 1.01449 0.99459 1.22768 0.95958 0.97390 1.01064 1.18955 0.95039 0.96814 0.90633 0.90460 1.21739 0.98195 1.06464 0.90116 1.21042 0.89005 0.74911 0.85013 1.90709 1.16255 1.50354 1.87026 1.45962 1.10899 1.75464 1.05426 1.21679 0.93005 1.03032 0.82634 1.22453 0.91750 0.83822 0.94395 1.86568 1.60814 1.36022 1.52671 1.22604 0.96543 1.02695 0.92733 1.21779 0.88967 0.95644 0.95259 1.44766 1.17323 1.71162 1.01938 1.19906 1.00959 1.29409 0.94366 0.93242 1.26890 1.00952 1.03239 0.95882 1.71040 1.39212 1.13001 1.36393 0.83158 0.75162 0.74100 0.73697 1.20078 1.23614 1.20607 1.22414 0.97141 0.96121 0.85741 1.19773 0.96453 0.95761 0.95981 1.21199 0.95579 0.98916 0.98272 1.21436 0.99780 0.98923 0.94397 1.21460 0.98556 0.94939 1.00060 1.21408 0.95800 0.99607 0.97610 1.21276 1.00196 0.98369 0.94768 0.88409 0.89329 0.87073 0.86632 0.86985 0.75472 0.90688 0.90356 0.76503 0.88364 0.87425 0.95287 0.96151 0.94088 0.92927 0.94373 0.85207 0.84581 0.84468 0.84490 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 13.22 67.78 0.90 -2.57 16 2 C -0.15 -2.85 7.42 25.65 0.19 -2.66 16 3 C 0.00 0.07 1.99 -12.28 -0.02 0.05 16 4 H 0.08 1.45 7.33 -2.39 -0.02 1.43 16 5 C -0.13 -1.78 4.90 29.85 0.15 -1.64 16 6 C 0.51 10.42 7.58 87.66 0.66 11.08 16 7 O -0.56 -15.41 14.17 -3.04 -0.04 -15.45 16 8 N -0.72 -13.65 5.19 -463.04 -2.40 -16.05 16 9 C 0.12 2.76 4.97 86.38 0.43 3.19 16 10 C 0.12 3.31 0.95 -9.40 -0.01 3.30 16 11 O -0.55 -15.89 13.18 -148.98 -1.96 -17.85 16 12 C -0.11 -3.27 6.16 31.79 0.20 -3.08 16 13 C 0.11 4.58 5.00 86.73 0.43 5.01 16 14 N -0.62 -29.64 3.28 -691.96 -2.27 -31.91 16 15 C -0.32 -18.26 10.43 84.03 0.88 -17.38 16 16 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 17 C -0.07 -4.49 5.43 84.86 0.46 -4.03 16 18 N -0.95 -61.22 13.70 21.65 0.30 -60.92 16 19 Si 1.11 55.51 24.69 68.60 1.69 57.20 16 20 H -0.27 -12.67 6.80 99.48 0.68 -11.99 16 21 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 22 H -0.28 -13.35 6.75 99.48 0.67 -12.68 16 23 C 0.11 3.92 5.74 86.85 0.50 4.42 16 24 C -0.08 -1.22 4.77 -19.87 -0.09 -1.31 16 25 C -0.12 -1.71 8.87 22.27 0.20 -1.51 16 26 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 27 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 28 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 29 C -0.13 -1.88 9.67 22.27 0.22 -1.66 16 30 H 0.10 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.09 1.89 7.83 -2.91 -0.02 1.87 16 32 H 0.11 1.86 8.05 -2.91 -0.02 1.83 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.28 7.56 -2.39 -0.02 1.26 16 35 H 0.41 6.17 7.31 -92.71 -0.68 5.49 16 36 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.39 7.96 8.57 -74.06 -0.63 7.33 16 39 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.11 2.74 7.93 -2.39 -0.02 2.73 16 41 H 0.03 1.29 7.97 -2.39 -0.02 1.27 16 42 H 0.02 0.94 3.59 -2.39 -0.01 0.93 16 43 H 0.25 16.02 8.73 -92.71 -0.81 15.21 16 44 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 45 H 0.04 1.33 8.04 -2.39 -0.02 1.32 16 46 H 0.13 1.52 7.62 -2.91 -0.02 1.49 16 47 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 50 H 0.13 1.61 7.95 -2.91 -0.02 1.58 16 Total: -1.00 -76.92 401.10 0.58 -76.34 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.47 Total: 21.67 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.75 Total: -13.02 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -4.38 Total: -108.88 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -2.01 Total: -33.31 kcal Atomic # 14 Polarization: 55.51 SS G_CDS: 1.69 Total: 57.20 kcal Total: -76.92 0.58 -76.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699907071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.472 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds