Wall clock time and date at job start Wed Apr 1 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00030 * 2 1 4 4 H 1.09004 * 109.46982 * 0.44375 * 3 2 1 5 5 C 1.50697 * 109.47204 * 120.44601 * 3 2 1 6 6 O 1.21275 * 119.99900 * 98.54438 * 5 3 2 7 7 N 1.34778 * 120.00114 * 278.55374 * 5 3 2 8 8 C 1.46922 * 120.63506 * 175.03046 * 7 5 3 9 9 C 1.53187 * 108.77902 * 126.41086 * 8 7 5 10 10 C 1.53039 * 109.31308 * 54.63326 * 9 8 7 11 11 C 1.53046 * 109.53817 * 298.63678 * 10 9 8 12 12 C 1.53002 * 109.49320 * 181.31783 * 11 10 9 13 13 O 1.42898 * 109.47242 * 65.00123 * 12 11 10 14 14 N 1.46499 * 109.49563 * 301.38011 * 11 10 9 15 15 C 1.36938 * 120.00410 * 299.93326 * 14 11 10 16 16 H 1.07999 * 119.99578 * 0.02562 * 15 14 11 17 17 C 1.38806 * 120.00290 * 180.02562 * 15 14 11 18 18 N 1.31625 * 119.99782 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00098 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47123 * 60.00488 * 19 17 15 21 21 H 1.48508 * 109.46999 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47384 * 300.00200 * 19 17 15 23 23 C 1.46926 * 120.62541 * 355.04841 * 7 5 3 24 24 C 1.50695 * 109.47158 * 240.44535 * 3 2 1 25 25 C 1.38240 * 120.00189 * 299.72860 * 24 3 2 26 26 C 1.38237 * 120.00110 * 179.81120 * 25 24 3 27 27 C 1.38230 * 119.99960 * 0.39404 * 26 25 24 28 28 C 1.38235 * 120.00050 * 359.85928 * 27 26 25 29 29 C 1.38233 * 120.00006 * 359.95389 * 28 27 26 30 30 H 1.08004 * 120.00246 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00256 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00264 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.58307 * 6.61993 * 8 7 5 34 34 H 1.09004 * 109.70457 * 246.26816 * 8 7 5 35 35 H 1.09004 * 109.49383 * 294.68740 * 9 8 7 36 36 H 1.09001 * 109.49927 * 174.59017 * 9 8 7 37 37 H 1.08999 * 109.45927 * 178.61916 * 10 9 8 38 38 H 1.08991 * 109.44922 * 58.65247 * 10 9 8 39 39 H 1.09002 * 109.47034 * 304.99667 * 12 11 10 40 40 H 1.09007 * 109.46427 * 185.00020 * 12 11 10 41 41 H 0.96703 * 113.99646 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99887 * 119.93935 * 14 11 10 43 43 H 0.97005 * 119.99463 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58933 * 113.80424 * 23 7 5 45 45 H 1.09003 * 109.59102 * 353.37478 * 23 7 5 46 46 H 1.08001 * 119.99615 * 359.97438 * 25 24 3 47 47 H 1.08004 * 119.99740 * 180.22742 * 26 25 24 48 48 H 1.07998 * 119.99958 * 179.83474 * 27 26 25 49 49 H 1.08004 * 120.00097 * 179.97438 * 28 27 26 50 50 H 1.08003 * 119.99787 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0080 5 6 2.9382 1.3802 1.2249 6 8 4.1163 1.1033 1.1466 7 7 2.4111 1.7549 2.4074 8 6 3.2237 1.7287 3.6311 9 6 3.1586 3.1073 4.2959 10 6 1.6945 3.4917 4.5217 11 6 0.9724 3.5704 3.1746 12 6 -0.4827 3.9866 3.3989 13 8 -0.5225 5.3139 3.9270 14 7 1.6373 4.5575 2.3204 15 6 1.7255 5.8632 2.7235 16 1 1.3052 6.1652 3.6714 17 6 2.3550 6.7986 1.9139 18 7 2.8667 6.4305 0.7584 19 14 2.4759 8.5795 2.4641 20 1 3.2241 8.6523 3.7448 21 1 3.1883 9.3703 1.4285 22 1 1.1110 9.1321 2.6562 23 6 1.0128 2.1970 2.4972 24 6 2.9216 1.3898 -1.2359 25 6 3.9030 0.4429 -1.4622 26 6 4.6875 0.5183 -2.5979 27 6 4.4961 1.5452 -3.5032 28 6 3.5182 2.4950 -3.2743 29 6 2.7311 2.4174 -2.1406 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 4.2575 1.4935 3.3783 34 1 2.8341 0.9746 4.3150 35 1 3.6330 3.8457 3.6495 36 1 3.6780 3.0743 5.2537 37 1 1.6459 4.4614 5.0170 38 1 1.2143 2.7398 5.1478 39 1 -0.9523 3.3008 4.1041 40 1 -1.0194 3.9566 2.4506 41 1 -1.4159 5.6441 4.0939 42 1 2.0150 4.2861 1.4691 43 1 3.3064 7.0843 0.1924 44 1 0.4405 1.4814 3.0875 45 1 0.5878 2.2707 1.4961 46 1 4.0550 -0.3573 -0.7529 47 1 5.4518 -0.2236 -2.7764 48 1 5.1108 1.6056 -4.3891 49 1 3.3689 3.2976 -3.9815 50 1 1.9668 3.1593 -1.9621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700242478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:33 Heat of formation + Delta-G solvation = -11.342243 kcal Electronic energy + Delta-G solvation = -32248.597749 eV Core-core repulsion = 28241.996522 eV Total energy + Delta-G solvation = -4006.601227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.43871 -38.91758 -37.72920 -35.67415 -35.09785 -33.67730 -32.01547 -31.42770 -31.04745 -30.56471 -28.67077 -27.25062 -25.35955 -24.83146 -23.49452 -22.43886 -22.08391 -21.22398 -20.13804 -19.13628 -18.21326 -17.37645 -17.19477 -16.56862 -16.25450 -15.59491 -15.24228 -14.98941 -14.79263 -14.41678 -14.16918 -14.11308 -13.82000 -13.59204 -13.34809 -13.20634 -13.05861 -12.89626 -12.64413 -12.39639 -12.28160 -12.03509 -11.93169 -11.84045 -11.46369 -11.12080 -10.86329 -10.76668 -10.73590 -10.67107 -10.35049 -10.25535 -10.12147 -9.93169 -9.91392 -9.51847 -9.09043 -8.99534 -8.75562 -8.55267 -8.44683 -8.20450 -6.87208 -5.60324 -2.87572 1.57387 1.74500 2.16636 2.99256 3.31949 3.52803 3.57479 3.58419 4.09768 4.66069 4.70160 4.82362 4.89374 4.96819 5.04131 5.21740 5.23065 5.28837 5.39787 5.44175 5.49502 5.54288 5.59177 5.66745 5.75157 5.78737 5.79579 5.80834 5.85291 5.88438 5.94338 5.96718 6.12317 6.17186 6.22389 6.35191 6.44479 6.48873 6.54083 6.60374 6.66595 6.74422 6.79498 6.90459 6.92464 7.00680 7.15354 7.28730 7.73865 8.10123 8.32774 8.52255 8.56840 9.68939 10.18212 10.54332 11.62209 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.004668 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.800067 B = 5996.517969 C = 7347.745122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.135 4.135 3 C -0.042 4.042 4 H 0.107 0.893 5 C 0.533 3.467 6 O -0.536 6.536 7 N -0.593 5.593 8 C 0.116 3.884 9 C -0.128 4.128 10 C -0.116 4.116 11 C 0.187 3.813 12 C 0.075 3.925 13 O -0.534 6.534 14 N -0.703 5.703 15 C -0.206 4.206 16 H 0.092 0.908 17 C -0.023 4.023 18 N -0.939 5.939 19 Si 0.903 3.097 20 H -0.290 1.290 21 H -0.297 1.297 22 H -0.289 1.289 23 C 0.110 3.890 24 C -0.066 4.066 25 C -0.079 4.079 26 C -0.132 4.132 27 C -0.121 4.121 28 C -0.124 4.124 29 C -0.097 4.097 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.351 0.649 42 H 0.380 0.620 43 H 0.251 0.749 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 -14.568 -1.025 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.153 4.153 3 C -0.063 4.063 4 H 0.125 0.875 5 C 0.321 3.679 6 O -0.413 6.413 7 N -0.326 5.326 8 C -0.006 4.006 9 C -0.166 4.166 10 C -0.156 4.156 11 C 0.093 3.907 12 C -0.007 4.007 13 O -0.336 6.336 14 N -0.344 5.344 15 C -0.337 4.337 16 H 0.109 0.891 17 C -0.217 4.217 18 N -0.589 5.589 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.223 1.223 22 H -0.217 1.217 23 C -0.014 4.014 24 C -0.067 4.067 25 C -0.097 4.097 26 C -0.150 4.150 27 C -0.139 4.139 28 C -0.142 4.142 29 C -0.116 4.116 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.196 0.804 42 H 0.214 0.786 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.138 0.862 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.745 -14.606 -1.045 15.393 hybrid contribution -0.482 1.229 0.088 1.323 sum -5.227 -13.377 -0.957 14.394 Atomic orbital electron populations 1.23902 0.95465 1.02290 1.00187 1.22559 0.95675 0.96609 1.00505 1.19473 0.96963 0.98215 0.91657 0.87502 1.20093 0.87854 0.76331 0.83631 1.90659 1.16098 1.50035 1.84516 1.47783 1.12329 1.64766 1.07673 1.21577 0.96417 0.97655 0.84933 1.21801 0.97963 0.96700 1.00149 1.21870 0.94958 1.01114 0.97681 1.19973 0.90790 0.88181 0.91733 1.22709 0.98366 0.84062 0.95521 1.86945 1.30238 1.30098 1.86319 1.42339 1.66528 1.04850 1.20640 1.19454 1.27470 0.83904 1.02876 0.89072 1.24725 1.02147 0.97687 0.97146 1.69658 1.44199 1.33218 1.11783 0.86315 0.77204 0.85846 0.77040 1.21750 1.22294 1.21658 1.21926 0.82124 0.95452 1.01875 1.19194 0.96997 0.96043 0.94452 1.20926 0.94186 0.98612 0.95974 1.21048 0.99942 0.98988 0.95001 1.21090 0.98254 0.95221 0.99378 1.21050 0.96352 0.98924 0.97834 1.21102 0.99702 0.96883 0.93863 0.88089 0.87897 0.86853 0.89642 0.92484 0.89352 0.92365 0.90791 0.94087 0.95789 0.94706 0.80445 0.78557 0.93946 0.91305 0.89771 0.86159 0.86544 0.86596 0.86197 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 13.94 29.02 0.40 -1.39 16 2 C -0.14 -1.62 8.31 -36.02 -0.30 -1.91 16 3 C -0.04 -0.63 1.87 -94.08 -0.18 -0.81 16 4 H 0.11 1.64 5.61 -51.93 -0.29 1.35 16 5 C 0.53 9.45 6.79 -10.99 -0.07 9.37 16 6 O -0.54 -11.05 13.97 5.56 0.08 -10.97 16 7 N -0.59 -9.74 2.87 -172.77 -0.50 -10.24 16 8 C 0.12 1.86 6.44 -3.72 -0.02 1.84 16 9 C -0.13 -2.25 5.93 -26.61 -0.16 -2.40 16 10 C -0.12 -2.02 4.43 -26.69 -0.12 -2.13 16 11 C 0.19 3.32 0.68 -131.69 -0.09 3.23 16 12 C 0.07 1.20 6.09 37.16 0.23 1.42 16 13 O -0.53 -9.58 9.92 -35.23 -0.35 -9.93 16 14 N -0.70 -16.26 4.22 -47.12 -0.20 -16.46 16 15 C -0.21 -5.44 8.14 -15.06 -0.12 -5.56 16 16 H 0.09 2.43 5.29 -52.49 -0.28 2.15 16 17 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 18 N -0.94 -28.20 13.06 55.49 0.72 -27.47 16 19 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C 0.11 1.63 4.97 -3.71 -0.02 1.61 16 24 C -0.07 -1.08 4.61 -104.62 -0.48 -1.56 16 25 C -0.08 -1.23 7.97 -39.58 -0.32 -1.54 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 28 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 29 C -0.10 -1.59 9.67 -39.58 -0.38 -1.97 16 30 H 0.10 0.97 7.53 -52.48 -0.40 0.57 16 31 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.09 1.48 7.00 -51.93 -0.36 1.11 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.97 7.53 -51.93 -0.39 1.58 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.47 6.97 -51.93 -0.36 1.10 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.35 4.60 9.12 45.56 0.42 5.02 16 42 H 0.38 9.70 7.65 -40.82 -0.31 9.39 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.20 4.74 -51.93 -0.25 0.96 16 46 H 0.12 1.82 7.43 -52.49 -0.39 1.43 16 47 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 48 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 49 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 50 H 0.12 2.01 7.95 -52.48 -0.42 1.60 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -33.30 394.65 -9.05 -42.36 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -6.82 Total: 17.94 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.92 Total: -9.11 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.03 Total: -54.17 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.27 Total: -20.90 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.30 -9.05 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700242478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.014 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds