Wall clock time and date at job start Wed Apr 1 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00030 * 2 1 4 4 H 1.09004 * 109.46982 * 0.44375 * 3 2 1 5 5 C 1.50697 * 109.47204 * 120.44601 * 3 2 1 6 6 O 1.21275 * 119.99900 * 98.54438 * 5 3 2 7 7 N 1.34778 * 120.00114 * 278.55374 * 5 3 2 8 8 C 1.46922 * 120.63506 * 175.03046 * 7 5 3 9 9 C 1.53187 * 108.77902 * 126.41086 * 8 7 5 10 10 C 1.53039 * 109.31308 * 54.63326 * 9 8 7 11 11 C 1.53046 * 109.53817 * 298.63678 * 10 9 8 12 12 C 1.53002 * 109.49320 * 181.31783 * 11 10 9 13 13 O 1.42898 * 109.47242 * 65.00123 * 12 11 10 14 14 N 1.46499 * 109.49563 * 301.38011 * 11 10 9 15 15 C 1.36938 * 120.00410 * 299.93326 * 14 11 10 16 16 H 1.07999 * 119.99578 * 0.02562 * 15 14 11 17 17 C 1.38806 * 120.00290 * 180.02562 * 15 14 11 18 18 N 1.31625 * 119.99782 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00098 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47123 * 60.00488 * 19 17 15 21 21 H 1.48508 * 109.46999 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47384 * 300.00200 * 19 17 15 23 23 C 1.46926 * 120.62541 * 355.04841 * 7 5 3 24 24 C 1.50695 * 109.47158 * 240.44535 * 3 2 1 25 25 C 1.38240 * 120.00189 * 299.72860 * 24 3 2 26 26 C 1.38237 * 120.00110 * 179.81120 * 25 24 3 27 27 C 1.38230 * 119.99960 * 0.39404 * 26 25 24 28 28 C 1.38235 * 120.00050 * 359.85928 * 27 26 25 29 29 C 1.38233 * 120.00006 * 359.95389 * 28 27 26 30 30 H 1.08004 * 120.00246 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00256 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00264 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.58307 * 6.61993 * 8 7 5 34 34 H 1.09004 * 109.70457 * 246.26816 * 8 7 5 35 35 H 1.09004 * 109.49383 * 294.68740 * 9 8 7 36 36 H 1.09001 * 109.49927 * 174.59017 * 9 8 7 37 37 H 1.08999 * 109.45927 * 178.61916 * 10 9 8 38 38 H 1.08991 * 109.44922 * 58.65247 * 10 9 8 39 39 H 1.09002 * 109.47034 * 304.99667 * 12 11 10 40 40 H 1.09007 * 109.46427 * 185.00020 * 12 11 10 41 41 H 0.96703 * 113.99646 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99887 * 119.93935 * 14 11 10 43 43 H 0.97005 * 119.99463 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58933 * 113.80424 * 23 7 5 45 45 H 1.09003 * 109.59102 * 353.37478 * 23 7 5 46 46 H 1.08001 * 119.99615 * 359.97438 * 25 24 3 47 47 H 1.08004 * 119.99740 * 180.22742 * 26 25 24 48 48 H 1.07998 * 119.99958 * 179.83474 * 27 26 25 49 49 H 1.08004 * 120.00097 * 179.97438 * 28 27 26 50 50 H 1.08003 * 119.99787 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0080 5 6 2.9382 1.3802 1.2249 6 8 4.1163 1.1033 1.1466 7 7 2.4111 1.7549 2.4074 8 6 3.2237 1.7287 3.6311 9 6 3.1586 3.1073 4.2959 10 6 1.6945 3.4917 4.5217 11 6 0.9724 3.5704 3.1746 12 6 -0.4827 3.9866 3.3989 13 8 -0.5225 5.3139 3.9270 14 7 1.6373 4.5575 2.3204 15 6 1.7255 5.8632 2.7235 16 1 1.3052 6.1652 3.6714 17 6 2.3550 6.7986 1.9139 18 7 2.8667 6.4305 0.7584 19 14 2.4759 8.5795 2.4641 20 1 3.2241 8.6523 3.7448 21 1 3.1883 9.3703 1.4285 22 1 1.1110 9.1321 2.6562 23 6 1.0128 2.1970 2.4972 24 6 2.9216 1.3898 -1.2359 25 6 3.9030 0.4429 -1.4622 26 6 4.6875 0.5183 -2.5979 27 6 4.4961 1.5452 -3.5032 28 6 3.5182 2.4950 -3.2743 29 6 2.7311 2.4174 -2.1406 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 4.2575 1.4935 3.3783 34 1 2.8341 0.9746 4.3150 35 1 3.6330 3.8457 3.6495 36 1 3.6780 3.0743 5.2537 37 1 1.6459 4.4614 5.0170 38 1 1.2143 2.7398 5.1478 39 1 -0.9523 3.3008 4.1041 40 1 -1.0194 3.9566 2.4506 41 1 -1.4159 5.6441 4.0939 42 1 2.0150 4.2861 1.4691 43 1 3.3064 7.0843 0.1924 44 1 0.4405 1.4814 3.0875 45 1 0.5878 2.2707 1.4961 46 1 4.0550 -0.3573 -0.7529 47 1 5.4518 -0.2236 -2.7764 48 1 5.1108 1.6056 -4.3891 49 1 3.3689 3.2976 -3.9815 50 1 1.9668 3.1593 -1.9621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700242478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:32 Heat of formation + Delta-G solvation = -33.320552 kcal Electronic energy + Delta-G solvation = -32249.550800 eV Core-core repulsion = 28241.996522 eV Total energy + Delta-G solvation = -4007.554278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72724 -40.16336 -39.09253 -37.01690 -36.16974 -35.40554 -33.61569 -32.92095 -32.09405 -31.71241 -30.46782 -28.41506 -26.63595 -26.15671 -25.46460 -23.58315 -23.37984 -22.35210 -21.28698 -20.43133 -19.57062 -19.15280 -18.42641 -17.92587 -17.58194 -16.93486 -16.55297 -16.34478 -16.09564 -15.77508 -15.66361 -15.41852 -15.28253 -15.00368 -14.73692 -14.60152 -14.31817 -14.12024 -13.88529 -13.63721 -13.53879 -13.42627 -13.26231 -13.16013 -12.83670 -12.76357 -12.65382 -12.25811 -12.03567 -11.96022 -11.82625 -11.73786 -11.67883 -11.56109 -11.22147 -11.06377 -10.71004 -10.47106 -10.16760 -9.73296 -9.59641 -9.52680 -8.83075 -7.75121 -4.98511 0.42971 0.56722 1.27495 1.47192 1.48637 1.54229 1.68804 2.09029 2.66751 2.93579 3.42478 3.57348 3.71673 3.74817 3.76047 3.93913 4.00037 4.12326 4.14512 4.19684 4.21289 4.27936 4.31399 4.45300 4.47074 4.52586 4.58703 4.64115 4.67091 4.69099 4.79668 4.83678 4.86154 5.03369 5.04683 5.06780 5.12687 5.19884 5.28472 5.54171 5.55962 5.59847 5.64248 5.65187 5.69099 5.71795 5.79848 5.96596 6.15318 6.43606 6.47060 7.18684 7.23803 7.54683 8.25574 8.47503 9.48288 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.004668 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.800067 B = 5996.517969 C = 7347.745122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.033 4.033 4 H 0.098 0.902 5 C 0.525 3.475 6 O -0.576 6.576 7 N -0.594 5.594 8 C 0.119 3.881 9 C -0.122 4.122 10 C -0.109 4.109 11 C 0.172 3.828 12 C 0.077 3.923 13 O -0.567 6.567 14 N -0.713 5.713 15 C -0.171 4.171 16 H 0.093 0.907 17 C -0.095 4.095 18 N -0.977 5.977 19 Si 0.954 3.046 20 H -0.291 1.291 21 H -0.309 1.309 22 H -0.282 1.282 23 C 0.113 3.887 24 C -0.082 4.082 25 C -0.093 4.093 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.134 4.134 29 C -0.124 4.124 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.030 0.970 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.374 0.626 42 H 0.365 0.635 43 H 0.237 0.763 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.134 0.866 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 -16.871 0.202 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C -0.054 4.054 4 H 0.116 0.884 5 C 0.314 3.686 6 O -0.456 6.456 7 N -0.325 5.325 8 C -0.003 4.003 9 C -0.161 4.161 10 C -0.149 4.149 11 C 0.081 3.919 12 C -0.004 4.004 13 O -0.373 6.373 14 N -0.351 5.351 15 C -0.304 4.304 16 H 0.111 0.889 17 C -0.285 4.285 18 N -0.632 5.632 19 Si 0.787 3.213 20 H -0.218 1.218 21 H -0.237 1.237 22 H -0.208 1.208 23 C -0.010 4.010 24 C -0.082 4.082 25 C -0.111 4.111 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.152 4.152 29 C -0.142 4.142 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.222 0.778 42 H 0.196 0.804 43 H 0.046 0.954 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.137 0.863 47 H 0.161 0.839 48 H 0.164 0.836 49 H 0.152 0.848 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.052 -16.923 0.254 18.336 hybrid contribution 0.138 1.874 -0.186 1.888 sum -6.914 -15.050 0.067 16.562 Atomic orbital electron populations 1.24154 0.94577 1.03736 0.96619 1.22411 0.96267 0.95026 1.03709 1.19393 0.96295 0.99739 0.89941 0.88379 1.20634 0.87701 0.75688 0.84607 1.90627 1.17758 1.51966 1.85204 1.47893 1.13072 1.64075 1.07466 1.21599 0.95918 0.97468 0.85355 1.21699 0.98230 0.96132 1.00002 1.21790 0.94705 1.00866 0.97531 1.20446 0.91611 0.88552 0.91328 1.22620 0.96567 0.84245 0.96934 1.86814 1.32622 1.31366 1.86511 1.42496 1.66901 1.04922 1.20783 1.19705 1.23864 0.85199 1.01618 0.88915 1.25335 1.04268 1.00857 0.98001 1.69821 1.46841 1.33317 1.13171 0.85460 0.77153 0.82687 0.75987 1.21814 1.23683 1.20824 1.22072 0.81621 0.94544 1.02757 1.19428 0.97669 0.96174 0.94959 1.21048 0.94620 0.98712 0.96700 1.21423 0.99932 0.99538 0.94346 1.21445 0.97941 0.94433 1.00263 1.21337 0.96417 0.99730 0.97670 1.21208 1.00586 0.97254 0.95187 0.87716 0.85155 0.86477 0.91677 0.88415 0.95153 0.90393 0.93629 0.89881 0.91308 0.94502 0.77845 0.80395 0.95394 0.86832 0.89370 0.86276 0.83946 0.83570 0.84782 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 13.94 67.79 0.95 -1.63 16 2 C -0.16 -3.50 8.31 25.65 0.21 -3.28 16 3 C -0.03 -0.99 1.87 -13.03 -0.02 -1.02 16 4 H 0.10 3.08 5.61 -2.38 -0.01 3.07 16 5 C 0.52 18.80 6.79 87.66 0.60 19.39 16 6 O -0.58 -24.56 13.97 -3.02 -0.04 -24.60 16 7 N -0.59 -18.82 2.87 -818.93 -2.35 -21.17 16 8 C 0.12 3.63 6.44 86.36 0.56 4.19 16 9 C -0.12 -4.21 5.93 30.67 0.18 -4.03 16 10 C -0.11 -3.52 4.43 30.62 0.14 -3.38 16 11 C 0.17 5.74 0.68 3.68 0.00 5.74 16 12 C 0.08 2.18 6.09 71.98 0.44 2.62 16 13 O -0.57 -18.97 9.92 -148.98 -1.48 -20.45 16 14 N -0.71 -33.26 4.22 -302.99 -1.28 -34.54 16 15 C -0.17 -9.18 8.14 84.03 0.68 -8.50 16 16 H 0.09 4.93 5.29 -2.91 -0.02 4.91 16 17 C -0.09 -5.55 5.50 84.86 0.47 -5.09 16 18 N -0.98 -61.56 13.06 21.65 0.28 -61.28 16 19 Si 0.95 48.70 29.55 68.60 2.03 50.73 16 20 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 21 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 23 C 0.11 3.02 4.97 86.36 0.43 3.45 16 24 C -0.08 -2.74 4.61 -19.87 -0.09 -2.83 16 25 C -0.09 -2.93 7.97 22.27 0.18 -2.76 16 26 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 27 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 28 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 29 C -0.12 -4.25 9.67 22.27 0.22 -4.04 16 30 H 0.10 1.69 7.53 -2.91 -0.02 1.67 16 31 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.06 2.27 7.00 -2.39 -0.02 2.26 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.03 1.39 7.53 -2.38 -0.02 1.37 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.73 6.97 -2.39 -0.02 1.71 16 38 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.37 8.76 9.12 -74.06 -0.68 8.08 16 42 H 0.36 19.25 7.65 -92.71 -0.71 18.54 16 43 H 0.24 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.09 2.33 4.74 -2.39 -0.01 2.32 16 46 H 0.12 3.70 7.43 -2.91 -0.02 3.68 16 47 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 48 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 49 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 50 H 0.11 3.99 7.95 -2.91 -0.02 3.96 16 Total: -1.00 -77.48 394.65 2.33 -75.15 By element: Atomic # 1 Polarization: 48.14 SS G_CDS: -0.43 Total: 47.71 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.60 Total: -11.55 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -3.35 Total: -116.99 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.52 Total: -45.06 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -77.48 2.33 -75.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700242478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.831 kcal (2) G-P(sol) polarization free energy of solvation -77.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds