Wall clock time and date at job start Wed Apr 1 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 N 1.46504 * 109.47335 * 120.00186 * 2 1 3 5 5 C 1.46497 * 119.99601 * 300.00179 * 4 2 1 6 6 C 1.53003 * 109.47019 * 269.99636 * 5 4 2 7 7 N 1.46905 * 109.47129 * 180.02562 * 6 5 4 8 8 C 1.46899 * 110.99634 * 66.04794 * 7 6 5 9 9 C 1.46894 * 110.99906 * 189.99951 * 7 6 5 10 10 C 1.52999 * 109.46880 * 170.00259 * 9 7 6 11 11 H 1.09001 * 110.75705 * 57.01940 * 10 9 7 12 12 C 1.55309 * 110.84905 * 180.71522 * 10 9 7 13 13 C 1.54939 * 100.94463 * 152.32110 * 12 10 9 14 14 O 1.43649 * 105.13673 * 323.55795 * 13 12 10 15 15 C 1.43233 * 109.97147 * 24.42692 * 14 13 12 16 16 C 1.34778 * 120.00090 * 119.99555 * 4 2 1 17 17 O 1.21276 * 119.99491 * 180.02562 * 16 4 2 18 18 C 1.50699 * 119.99778 * 0.02562 * 16 4 2 19 19 S 1.81004 * 109.46742 * 179.97438 * 18 16 4 20 20 C 1.76203 * 99.99907 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99832 * 180.27629 * 20 19 18 23 23 N 1.31634 * 120.00296 * 359.72198 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.72079 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99840 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47038 * 299.99817 * 24 22 20 28 28 H 1.08998 * 109.47360 * 299.99533 * 1 2 3 29 29 H 1.09004 * 109.46962 * 60.00049 * 1 2 3 30 30 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46948 * 240.00099 * 2 1 3 32 32 H 1.08996 * 109.47670 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47321 * 300.00367 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99673 * 3 2 1 35 35 H 1.09003 * 109.47708 * 29.99983 * 5 4 2 36 36 H 1.08999 * 109.46844 * 149.99740 * 5 4 2 37 37 H 1.08993 * 109.47019 * 300.00198 * 6 5 4 38 38 H 1.08995 * 109.46789 * 60.00505 * 6 5 4 39 39 H 1.08999 * 109.47614 * 59.99887 * 8 7 6 40 40 H 1.09006 * 109.47183 * 179.97438 * 8 7 6 41 41 H 1.09008 * 109.47492 * 299.99892 * 8 7 6 42 42 H 1.09004 * 109.47222 * 289.99980 * 9 7 6 43 43 H 1.08997 * 109.47094 * 50.00188 * 9 7 6 44 44 H 1.08997 * 111.12422 * 270.24584 * 12 10 9 45 45 H 1.09008 * 111.12353 * 34.40439 * 12 10 9 46 46 H 1.08996 * 110.31437 * 204.64131 * 13 12 10 47 47 H 1.09000 * 110.39547 * 82.51154 * 13 12 10 48 48 H 1.09007 * 109.83072 * 238.77801 * 15 14 13 49 49 H 1.09002 * 109.83202 * 117.80099 * 15 14 13 50 50 H 1.09000 * 109.47396 * 59.99696 * 18 16 4 51 51 H 1.09001 * 109.47080 * 299.99119 * 18 16 4 52 52 H 0.96995 * 120.00136 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7190 0.8169 2.9899 7 7 2.3644 1.3184 4.3244 8 6 2.4403 0.2470 5.3266 9 6 3.2151 2.4545 4.7030 10 6 2.6624 3.1044 5.9731 11 1 2.5942 2.3763 6.7814 12 6 3.5292 4.3229 6.3927 13 6 2.4807 5.1876 7.1367 14 8 1.2572 5.0041 6.4067 15 6 1.2892 3.7565 5.7038 16 6 2.7932 -1.7865 1.0725 17 8 3.1970 -2.3584 2.0627 18 6 3.1576 -2.3010 -0.2963 19 16 4.1986 -3.7724 -0.1302 20 6 4.4675 -4.1504 -1.8301 21 1 4.0284 -3.5298 -2.5973 22 6 5.2383 -5.2493 -2.1831 23 7 5.7731 -6.0059 -1.2481 24 14 5.5169 -5.6546 -3.9853 25 1 6.1941 -4.5127 -4.6504 26 1 6.3685 -6.8663 -4.0942 27 1 4.2100 -5.9067 -4.6437 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6904 0.2973 2.4844 36 1 1.6238 -1.0227 3.2290 37 1 3.6929 0.3295 3.0323 38 1 2.7596 1.6494 2.2876 39 1 3.4556 -0.1481 5.3601 40 1 2.1734 0.6455 6.3055 41 1 1.7485 -0.5515 5.0581 42 1 4.2303 2.1029 4.8870 43 1 3.2248 3.1862 3.8952 44 1 4.3348 4.0201 7.0616 45 1 3.9212 4.8453 5.5199 46 1 2.7763 6.2366 7.1221 47 1 2.3636 4.8424 8.1639 48 1 1.1660 3.9310 4.6349 49 1 0.4935 3.1065 6.0678 50 1 3.7027 -1.5302 -0.8410 51 1 2.2494 -2.5578 -0.8416 52 1 6.3120 -6.7737 -1.4949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700974051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:55 Heat of formation + Delta-G solvation = -79.254608 kcal Electronic energy + Delta-G solvation = -28617.413325 eV Core-core repulsion = 24743.311148 eV Total energy + Delta-G solvation = -3874.102177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.08648 -39.71611 -37.62134 -36.39777 -33.28091 -32.44132 -31.72530 -30.54155 -29.65992 -28.11433 -27.28147 -27.07283 -25.50499 -24.37665 -22.74333 -21.85611 -21.45929 -20.47470 -18.92058 -17.81450 -17.20275 -16.78815 -16.35116 -16.17601 -15.52189 -15.33743 -15.10792 -14.85335 -14.80980 -14.33373 -14.11937 -13.92352 -13.64127 -13.57753 -13.41951 -13.31940 -13.14613 -12.58311 -12.54690 -12.44078 -12.13777 -12.06668 -11.93496 -11.87548 -11.77546 -11.42818 -11.29154 -11.23298 -11.06398 -11.05155 -11.01226 -10.88153 -10.80821 -10.66511 -9.81800 -9.80356 -9.35902 -9.07197 -8.69692 -8.47908 -8.23946 -6.51450 -6.22676 -3.93420 2.85732 3.04252 3.22245 3.23134 3.27582 3.49151 3.58922 3.76416 4.16606 4.19210 4.36938 4.56693 4.67314 4.76133 4.80461 4.83542 4.90942 4.99176 5.01580 5.11333 5.12578 5.15483 5.21747 5.28337 5.33414 5.34995 5.42680 5.42978 5.48474 5.49038 5.52194 5.55651 5.56911 5.68509 5.70358 5.78153 5.82144 5.83314 5.85974 5.89326 5.95321 6.08040 6.11472 6.14052 6.59369 6.69261 6.78785 6.87666 7.56460 7.58505 8.33736 8.56318 9.22431 10.84641 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.002062 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.411252 B =13576.027272 C =14206.580752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 C -0.166 4.166 4 N -0.614 5.614 5 C 0.122 3.878 6 C 0.034 3.966 7 N -0.539 5.539 8 C 0.017 3.983 9 C 0.066 3.934 10 C -0.119 4.119 11 H 0.087 0.913 12 C -0.153 4.153 13 C 0.052 3.948 14 O -0.391 6.391 15 C 0.067 3.933 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 21.877 11.364 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 C -0.224 4.224 4 N -0.350 5.350 5 C -0.002 4.002 6 C -0.094 4.094 7 N -0.263 5.263 8 C -0.131 4.131 9 C -0.062 4.062 10 C -0.138 4.138 11 H 0.105 0.895 12 C -0.191 4.191 13 C -0.024 4.024 14 O -0.310 6.310 15 C -0.009 4.009 16 C 0.322 3.678 17 O -0.390 6.390 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.053 21.146 12.844 26.346 hybrid contribution 0.812 -0.074 -2.303 2.443 sum -8.241 21.072 10.541 24.961 Atomic orbital electron populations 1.22166 0.94948 1.02683 1.02303 1.21194 0.94445 0.93450 0.88565 1.22301 1.01770 0.95882 1.02413 1.48040 1.52220 1.28571 1.06133 1.21251 0.97428 0.97267 0.84236 1.22724 0.98299 0.98617 0.89805 1.61984 1.53623 1.08246 1.02462 1.22511 1.00910 0.94268 0.95409 1.22062 0.94463 0.93271 0.96448 1.22769 0.95340 0.97259 0.98408 0.89521 1.23307 0.98511 0.96065 1.01231 1.23323 0.83670 1.00195 0.95244 1.88400 1.37886 1.39276 1.65477 1.23075 0.96490 0.84254 0.97108 1.20353 0.77041 0.79043 0.91383 1.90686 1.51940 1.56821 1.39555 1.23565 1.05003 1.05352 0.96214 1.85387 1.61258 1.26087 1.10768 1.22815 1.37746 1.16028 0.91753 0.91009 1.24990 0.94839 0.95092 0.98650 1.70007 1.31534 1.16032 1.32708 0.86232 0.78378 0.77936 0.83007 1.19945 1.20810 1.19920 0.92132 0.91482 0.92015 0.88495 0.92167 0.91508 0.91804 0.90023 0.89931 0.94015 0.90149 0.95108 0.91489 0.90758 0.94218 0.90470 0.89899 0.90154 0.89890 0.92318 0.90809 0.91296 0.89366 0.89302 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.17 37.16 0.34 -1.14 16 2 C 0.13 1.39 3.17 -67.93 -0.22 1.17 16 3 C -0.17 -1.48 8.14 37.16 0.30 -1.18 16 4 N -0.61 -8.46 2.40 -166.11 -0.40 -8.86 16 5 C 0.12 1.47 4.75 -4.04 -0.02 1.45 16 6 C 0.03 0.38 5.00 -3.82 -0.02 0.36 16 7 N -0.54 -5.15 4.58 -242.92 -1.11 -6.27 16 8 C 0.02 0.17 9.14 60.06 0.55 0.72 16 9 C 0.07 0.54 4.28 -3.83 -0.02 0.52 16 10 C -0.12 -0.87 2.88 -88.67 -0.26 -1.12 16 11 H 0.09 0.63 6.43 -51.93 -0.33 0.30 16 12 C -0.15 -0.95 6.62 -24.48 -0.16 -1.11 16 13 C 0.05 0.36 7.78 38.18 0.30 0.66 16 14 O -0.39 -3.88 11.36 -35.23 -0.40 -4.28 16 15 C 0.07 0.57 7.23 37.88 0.27 0.84 16 16 C 0.53 10.00 7.69 -10.99 -0.08 9.92 16 17 O -0.52 -11.58 15.44 5.56 0.09 -11.50 16 18 C -0.15 -3.05 4.47 36.01 0.16 -2.89 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.51 6.66 -51.93 -0.35 0.17 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.13 5.77 -51.92 -0.30 0.83 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 6.17 -51.93 -0.32 0.21 16 35 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 36 H 0.08 1.16 5.83 -51.93 -0.30 0.85 16 37 H 0.04 0.59 8.12 -51.93 -0.42 0.16 16 38 H 0.08 0.81 5.23 -51.93 -0.27 0.54 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.54 6.27 -51.93 -0.33 0.22 16 41 H 0.07 0.77 6.47 -51.92 -0.34 0.43 16 42 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.48 8.04 -51.92 -0.42 0.07 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.64 7.76 -51.92 -0.40 0.24 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 1.66 7.79 -51.92 -0.40 1.25 16 51 H 0.09 1.67 7.79 -51.92 -0.40 1.27 16 52 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 413.88 15.07 6.24 6.24 Total: -1.00 -33.59 413.88 -9.84 -43.43 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -9.10 Total: -1.14 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 1.35 Total: -4.66 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.78 Total: -40.48 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.31 Total: -15.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.59 -9.84 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700974051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.829 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds