Wall clock time and date at job start Wed Apr 1 2020 03:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 N 1.46504 * 109.47335 * 120.00186 * 2 1 3 5 5 C 1.46497 * 119.99601 * 300.00179 * 4 2 1 6 6 C 1.53003 * 109.47019 * 269.99636 * 5 4 2 7 7 N 1.46905 * 109.47129 * 180.02562 * 6 5 4 8 8 C 1.46899 * 110.99634 * 66.04794 * 7 6 5 9 9 C 1.46894 * 110.99906 * 189.99951 * 7 6 5 10 10 C 1.52999 * 109.46880 * 170.00259 * 9 7 6 11 11 H 1.09001 * 110.75705 * 57.01940 * 10 9 7 12 12 C 1.55309 * 110.84905 * 180.71522 * 10 9 7 13 13 C 1.54939 * 100.94463 * 152.32110 * 12 10 9 14 14 O 1.43649 * 105.13673 * 323.55795 * 13 12 10 15 15 C 1.43233 * 109.97147 * 24.42692 * 14 13 12 16 16 C 1.34778 * 120.00090 * 119.99555 * 4 2 1 17 17 O 1.21276 * 119.99491 * 180.02562 * 16 4 2 18 18 C 1.50699 * 119.99778 * 0.02562 * 16 4 2 19 19 S 1.81004 * 109.46742 * 179.97438 * 18 16 4 20 20 C 1.76203 * 99.99907 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99832 * 180.27629 * 20 19 18 23 23 N 1.31634 * 120.00296 * 359.72198 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.72079 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99840 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47038 * 299.99817 * 24 22 20 28 28 H 1.08998 * 109.47360 * 299.99533 * 1 2 3 29 29 H 1.09004 * 109.46962 * 60.00049 * 1 2 3 30 30 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46948 * 240.00099 * 2 1 3 32 32 H 1.08996 * 109.47670 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47321 * 300.00367 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99673 * 3 2 1 35 35 H 1.09003 * 109.47708 * 29.99983 * 5 4 2 36 36 H 1.08999 * 109.46844 * 149.99740 * 5 4 2 37 37 H 1.08993 * 109.47019 * 300.00198 * 6 5 4 38 38 H 1.08995 * 109.46789 * 60.00505 * 6 5 4 39 39 H 1.08999 * 109.47614 * 59.99887 * 8 7 6 40 40 H 1.09006 * 109.47183 * 179.97438 * 8 7 6 41 41 H 1.09008 * 109.47492 * 299.99892 * 8 7 6 42 42 H 1.09004 * 109.47222 * 289.99980 * 9 7 6 43 43 H 1.08997 * 109.47094 * 50.00188 * 9 7 6 44 44 H 1.08997 * 111.12422 * 270.24584 * 12 10 9 45 45 H 1.09008 * 111.12353 * 34.40439 * 12 10 9 46 46 H 1.08996 * 110.31437 * 204.64131 * 13 12 10 47 47 H 1.09000 * 110.39547 * 82.51154 * 13 12 10 48 48 H 1.09007 * 109.83072 * 238.77801 * 15 14 13 49 49 H 1.09002 * 109.83202 * 117.80099 * 15 14 13 50 50 H 1.09000 * 109.47396 * 59.99696 * 18 16 4 51 51 H 1.09001 * 109.47080 * 299.99119 * 18 16 4 52 52 H 0.96995 * 120.00136 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7190 0.8169 2.9899 7 7 2.3644 1.3184 4.3244 8 6 2.4403 0.2470 5.3266 9 6 3.2151 2.4545 4.7030 10 6 2.6624 3.1044 5.9731 11 1 2.5942 2.3763 6.7814 12 6 3.5292 4.3229 6.3927 13 6 2.4807 5.1876 7.1367 14 8 1.2572 5.0041 6.4067 15 6 1.2892 3.7565 5.7038 16 6 2.7932 -1.7865 1.0725 17 8 3.1970 -2.3584 2.0627 18 6 3.1576 -2.3010 -0.2963 19 16 4.1986 -3.7724 -0.1302 20 6 4.4675 -4.1504 -1.8301 21 1 4.0284 -3.5298 -2.5973 22 6 5.2383 -5.2493 -2.1831 23 7 5.7731 -6.0059 -1.2481 24 14 5.5169 -5.6546 -3.9853 25 1 6.1941 -4.5127 -4.6504 26 1 6.3685 -6.8663 -4.0942 27 1 4.2100 -5.9067 -4.6437 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6904 0.2973 2.4844 36 1 1.6238 -1.0227 3.2290 37 1 3.6929 0.3295 3.0323 38 1 2.7596 1.6494 2.2876 39 1 3.4556 -0.1481 5.3601 40 1 2.1734 0.6455 6.3055 41 1 1.7485 -0.5515 5.0581 42 1 4.2303 2.1029 4.8870 43 1 3.2248 3.1862 3.8952 44 1 4.3348 4.0201 7.0616 45 1 3.9212 4.8453 5.5199 46 1 2.7763 6.2366 7.1221 47 1 2.3636 4.8424 8.1639 48 1 1.1660 3.9310 4.6349 49 1 0.4935 3.1065 6.0678 50 1 3.7027 -1.5302 -0.8410 51 1 2.2494 -2.5578 -0.8416 52 1 6.3120 -6.7737 -1.4949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700974051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:53 Heat of formation + Delta-G solvation = -101.431866 kcal Electronic energy + Delta-G solvation = -28618.375003 eV Core-core repulsion = 24743.311148 eV Total energy + Delta-G solvation = -3875.063855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.22602 -40.50239 -38.56739 -37.53496 -34.59626 -34.01703 -32.65615 -31.82491 -30.41111 -29.20147 -28.09937 -27.86472 -27.62275 -25.25750 -23.36180 -22.96122 -22.27802 -21.14655 -20.33183 -19.46016 -18.30602 -17.84836 -17.26120 -17.03830 -16.88952 -16.57981 -16.38672 -16.14985 -15.71374 -15.48710 -15.24822 -15.02241 -14.93178 -14.46406 -14.40010 -14.28678 -14.10929 -13.86517 -13.61695 -13.26628 -13.22900 -13.12978 -12.87751 -12.84517 -12.82588 -12.70816 -12.62486 -12.39731 -12.21116 -11.97717 -11.92107 -11.83441 -11.77096 -11.57660 -11.53629 -11.13944 -10.87539 -10.43942 -10.27597 -9.79297 -9.42245 -8.68821 -8.35468 -6.14131 1.23910 1.43033 1.44268 1.53864 1.55719 2.02202 2.26405 2.86072 2.98434 3.03700 3.23508 3.56459 3.63396 3.75434 3.88370 3.95417 3.96986 4.09616 4.17467 4.23983 4.30509 4.32974 4.33636 4.35014 4.42620 4.43547 4.48380 4.54976 4.66804 4.67704 4.72817 4.79314 4.83131 4.86198 4.93076 4.94875 4.98615 5.01029 5.03442 5.05653 5.07120 5.28461 5.30853 5.39411 5.40186 5.57957 5.93929 5.97330 6.11814 6.18389 6.30370 7.05423 7.13972 8.73442 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.002062 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.411252 B =13576.027272 C =14206.580752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 C -0.159 4.159 4 N -0.598 5.598 5 C 0.123 3.877 6 C 0.045 3.955 7 N -0.532 5.532 8 C 0.019 3.981 9 C 0.067 3.933 10 C -0.113 4.113 11 H 0.087 0.913 12 C -0.147 4.147 13 C 0.046 3.954 14 O -0.415 6.415 15 C 0.068 3.932 16 C 0.532 3.468 17 O -0.564 6.564 18 C -0.123 4.123 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.007 0.993 38 H 0.097 0.903 39 H 0.012 0.988 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.104 0.896 51 H 0.105 0.895 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 24.405 9.974 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 C -0.217 4.217 4 N -0.332 5.332 5 C 0.001 3.999 6 C -0.084 4.084 7 N -0.256 5.256 8 C -0.129 4.129 9 C -0.061 4.061 10 C -0.132 4.132 11 H 0.106 0.894 12 C -0.185 4.185 13 C -0.030 4.030 14 O -0.335 6.335 15 C -0.008 4.008 16 C 0.319 3.681 17 O -0.442 6.442 18 C -0.274 4.274 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.123 0.877 51 H 0.123 0.877 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.286 23.734 11.451 28.288 hybrid contribution 1.098 -0.730 -1.799 2.230 sum -9.188 23.004 9.652 26.585 Atomic orbital electron populations 1.22132 0.92989 1.02361 1.04016 1.21530 0.95977 0.94336 0.86693 1.22253 1.01033 0.94342 1.04089 1.48040 1.50134 1.26879 1.08116 1.21359 0.98989 0.96832 0.82765 1.22583 0.96086 0.98499 0.91226 1.62029 1.53677 1.08281 1.01638 1.22499 0.99616 0.94301 0.96482 1.22101 0.93932 0.92738 0.97287 1.22701 0.95106 0.97591 0.97793 0.89433 1.23297 0.98443 0.95222 1.01564 1.23500 0.82922 1.01164 0.95378 1.88373 1.39399 1.39785 1.65951 1.23061 0.96896 0.83991 0.96888 1.20141 0.77699 0.80189 0.90033 1.90671 1.54248 1.58774 1.40495 1.23376 1.04099 1.02116 0.97830 1.85569 1.63833 1.30874 1.12154 1.23153 1.37959 1.16518 0.91737 0.89938 1.26139 0.94239 0.94736 1.04052 1.70179 1.32437 1.16688 1.35433 0.85009 0.78773 0.77965 0.76293 1.18594 1.20404 1.18593 0.91058 0.89141 0.93374 0.89241 0.93317 0.89159 0.90792 0.87244 0.92149 0.97456 0.88484 0.96921 0.89537 0.91588 0.94792 0.89645 0.88611 0.89787 0.88737 0.91658 0.90988 0.91633 0.87743 0.87706 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.17 71.98 0.66 -1.72 16 2 C 0.12 2.28 3.17 44.99 0.14 2.43 16 3 C -0.16 -2.35 8.14 71.98 0.59 -1.76 16 4 N -0.60 -16.06 2.40 -797.83 -1.91 -17.98 16 5 C 0.12 2.89 4.75 86.38 0.41 3.30 16 6 C 0.04 0.98 5.00 86.30 0.43 1.41 16 7 N -0.53 -9.70 4.58 -922.45 -4.22 -13.92 16 8 C 0.02 0.38 9.14 127.69 1.17 1.54 16 9 C 0.07 1.02 4.28 86.30 0.37 1.39 16 10 C -0.11 -1.47 2.88 -9.53 -0.03 -1.50 16 11 H 0.09 1.14 6.43 -2.39 -0.02 1.12 16 12 C -0.15 -1.53 6.62 32.05 0.21 -1.31 16 13 C 0.05 0.56 7.78 72.64 0.56 1.13 16 14 O -0.41 -7.66 11.36 -148.98 -1.69 -9.35 16 15 C 0.07 1.05 7.23 72.45 0.52 1.57 16 16 C 0.53 20.32 7.69 87.66 0.67 20.99 16 17 O -0.56 -26.57 15.44 -3.02 -0.05 -26.62 16 18 C -0.12 -5.01 4.47 71.24 0.32 -4.69 16 19 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 20 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.75 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 24 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 28 H 0.07 0.94 6.66 -2.39 -0.02 0.93 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.09 1.90 5.77 -2.38 -0.01 1.88 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.96 6.17 -2.38 -0.01 0.94 16 35 H 0.11 1.99 6.43 -2.39 -0.02 1.97 16 36 H 0.06 1.73 5.83 -2.39 -0.01 1.72 16 37 H 0.01 0.21 8.12 -2.39 -0.02 0.19 16 38 H 0.10 1.78 5.23 -2.39 -0.01 1.76 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.09 1.33 6.27 -2.38 -0.01 1.32 16 41 H 0.07 1.40 6.47 -2.38 -0.02 1.39 16 42 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 43 H 0.09 1.17 7.86 -2.39 -0.02 1.16 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.83 8.04 -2.38 -0.02 0.81 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 1.12 7.76 -2.38 -0.02 1.11 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.10 3.88 7.79 -2.40 -0.02 3.86 16 51 H 0.10 3.90 7.79 -2.39 -0.02 3.88 16 52 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.21 413.88 1.31 -74.90 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.89 Total: 19.61 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 7.14 Total: -6.63 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -5.85 Total: -87.76 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.74 Total: -35.98 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -76.21 1.31 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700974051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.534 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds