Wall clock time and date at job start Wed Apr 1 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46824 * 2 1 4 4 H 1.08993 * 109.47118 * 305.30027 * 3 2 1 5 5 C 1.53007 * 109.47021 * 185.30495 * 3 2 1 6 6 N 1.46897 * 109.46903 * 180.02562 * 5 3 2 7 7 C 1.46898 * 110.99766 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47329 * 274.99625 * 7 6 5 9 9 C 1.52999 * 109.47436 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46920 * 60.00310 * 9 8 7 11 11 N 1.46495 * 109.47513 * 60.00068 * 10 9 8 12 12 C 1.34770 * 120.00231 * 84.99650 * 11 10 9 13 13 O 1.21287 * 119.99894 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00085 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.46868 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99906 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99977 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00239 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99710 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00203 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47322 * 89.99860 * 20 18 16 22 22 H 1.48500 * 109.47534 * 210.00133 * 20 18 16 23 23 H 1.48501 * 109.47132 * 330.00119 * 20 18 16 24 24 C 1.53005 * 109.47290 * 299.99845 * 10 9 8 25 25 C 1.52999 * 109.46721 * 59.99962 * 24 10 9 26 26 O 1.42897 * 109.46971 * 65.30396 * 3 2 1 27 27 C 1.42902 * 113.99806 * 216.53320 * 26 3 2 28 28 H 1.08998 * 109.46579 * 174.93734 * 1 2 3 29 29 H 1.09001 * 109.47069 * 294.93259 * 1 2 3 30 30 H 1.08998 * 109.46899 * 54.93896 * 1 2 3 31 31 H 1.09000 * 109.47207 * 240.00117 * 2 1 3 32 32 H 1.09001 * 109.47373 * 119.99578 * 2 1 3 33 33 H 1.09002 * 109.46619 * 299.99865 * 5 3 2 34 34 H 1.08995 * 109.46961 * 59.99458 * 5 3 2 35 35 H 1.00899 * 111.00154 * 303.94740 * 6 5 3 36 36 H 1.09006 * 109.47486 * 34.99726 * 7 6 5 37 37 H 1.08996 * 109.46837 * 300.00441 * 8 7 6 38 38 H 1.09008 * 109.46682 * 59.99938 * 8 7 6 39 39 H 1.08995 * 109.46976 * 300.00110 * 9 8 7 40 40 H 1.08997 * 109.47213 * 179.97438 * 9 8 7 41 41 H 1.09003 * 109.47002 * 179.97438 * 10 9 8 42 42 H 0.97000 * 120.00212 * 265.00295 * 11 10 9 43 43 H 1.09001 * 109.46986 * 300.00168 * 14 12 11 44 44 H 1.08994 * 109.47129 * 60.00419 * 14 12 11 45 45 H 0.97001 * 119.99595 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.47156 * 300.00479 * 24 10 9 47 47 H 1.08993 * 109.47579 * 180.02562 * 24 10 9 48 48 H 1.09004 * 109.46772 * 180.02562 * 25 24 10 49 49 H 1.08996 * 109.47442 * 60.00464 * 25 24 10 50 50 H 1.09003 * 109.47228 * 294.55993 * 27 26 3 51 51 H 1.08998 * 109.47408 * 174.55850 * 27 26 3 52 52 H 1.09001 * 109.46911 * 54.55807 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6012 1.9830 -0.8387 5 6 3.5642 1.4447 -0.1334 6 7 4.0538 2.8297 -0.1328 7 6 5.5168 2.8708 -0.2589 8 6 6.1526 2.7149 1.1240 9 6 7.6763 2.7571 0.9925 10 6 8.0988 4.0963 0.3851 11 7 7.6532 5.1888 1.2534 12 6 8.4123 5.5707 2.2994 13 8 9.4647 5.0103 2.5216 14 6 7.9535 6.6942 3.1930 15 16 9.1802 6.9684 4.4954 16 6 8.4112 8.2934 5.3660 17 1 7.4601 8.6798 5.0306 18 6 9.0282 8.8412 6.4821 19 7 10.1881 8.3711 6.8900 20 14 8.2133 10.2462 7.4045 21 1 7.3345 9.6966 8.4679 22 1 9.2565 11.1056 8.0196 23 1 7.4009 11.0536 6.4593 24 6 7.4631 4.2523 -0.9978 25 6 5.9394 4.2100 -0.8663 26 8 1.6680 2.0792 1.2240 27 6 1.3183 3.4573 1.0795 28 1 -0.3632 -1.0237 -0.0907 29 1 -0.3633 0.4332 0.9319 30 1 -0.3633 0.5903 -0.8412 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0030 0.9042 0.7054 34 1 3.8478 0.9590 -1.0670 35 1 3.6124 3.3696 -0.8619 36 1 5.8488 2.0582 -0.9052 37 1 5.8205 3.5274 1.7702 38 1 5.8519 1.7606 1.5566 39 1 8.0079 1.9443 0.3464 40 1 8.1292 2.6465 1.9777 41 1 9.1844 4.1266 0.2919 42 1 6.8116 5.6372 1.0756 43 1 7.8403 7.6041 2.6036 44 1 6.9966 6.4320 3.6441 45 1 10.6195 8.7542 7.6698 46 1 7.7947 3.4395 -1.6440 47 1 7.7644 5.2061 -1.4308 48 1 5.4865 4.3207 -1.8516 49 1 5.6077 5.0228 -0.2203 50 1 2.1958 4.0241 0.7683 51 1 0.9564 3.8422 2.0329 52 1 0.5360 3.5566 0.3270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714181467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:22 Heat of formation + Delta-G solvation = -105.664193 kcal Electronic energy + Delta-G solvation = -28351.207618 eV Core-core repulsion = 24475.960236 eV Total energy + Delta-G solvation = -3875.247382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.15552 -39.00651 -37.95599 -35.42475 -33.91513 -32.58216 -32.39177 -31.04448 -30.10170 -28.62936 -27.35995 -26.07654 -25.43468 -23.48351 -22.81770 -21.64316 -21.40036 -20.85343 -19.07636 -17.86208 -17.24996 -16.53552 -16.24482 -15.94776 -15.63233 -15.38485 -15.16505 -14.77715 -14.74933 -14.39613 -14.18745 -14.00979 -13.99338 -13.55609 -13.46083 -13.10705 -12.86224 -12.71694 -12.57472 -12.39564 -12.29600 -12.19688 -11.88158 -11.66932 -11.58418 -11.40534 -11.34798 -11.03817 -11.03357 -10.99040 -10.91886 -10.73517 -10.49018 -10.36303 -9.77763 -9.71687 -9.31146 -9.03766 -8.81154 -8.66070 -8.19335 -6.45849 -6.18546 -3.88496 3.09780 3.17503 3.24704 3.30509 3.35504 3.55447 3.64188 3.80819 4.23683 4.37928 4.49492 4.52668 4.64164 4.67307 4.83366 4.90243 4.97720 5.06195 5.10027 5.12677 5.16523 5.17402 5.20758 5.22955 5.29340 5.33409 5.34928 5.41248 5.46738 5.54673 5.58211 5.64204 5.68096 5.69738 5.72809 5.82059 5.86777 5.91070 5.94083 6.02909 6.08289 6.19416 6.23170 6.27813 6.72036 6.78073 6.97192 7.08802 7.62777 7.80733 8.38486 8.70424 9.26804 10.88861 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.002188 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.552715 B =12791.277000 C =14383.851880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.093 3.907 4 H 0.056 0.944 5 C 0.038 3.962 6 N -0.681 5.681 7 C 0.090 3.910 8 C -0.102 4.102 9 C -0.131 4.131 10 C 0.147 3.853 11 N -0.730 5.730 12 C 0.533 3.467 13 O -0.520 6.520 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.123 4.123 25 C -0.121 4.121 26 O -0.372 6.372 27 C 0.033 3.967 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.334 0.666 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -14.430 -21.123 31.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.091 4.091 6 N -0.311 5.311 7 C -0.019 4.019 8 C -0.141 4.141 9 C -0.171 4.171 10 C 0.042 3.958 11 N -0.385 5.385 12 C 0.319 3.681 13 O -0.394 6.394 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.161 4.161 25 C -0.159 4.159 26 O -0.290 6.290 27 C -0.064 4.064 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.152 0.848 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.231 0.769 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.097 0.903 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.905 -15.402 -19.764 29.678 hybrid contribution -2.053 1.688 -0.920 2.813 sum -17.958 -13.714 -20.684 30.633 Atomic orbital electron populations 1.21703 0.95210 1.01509 1.02206 1.21635 0.96731 0.95082 1.02775 1.22166 0.92954 0.93885 0.87549 0.92589 1.22587 0.95549 0.90219 1.00747 1.60482 1.05624 1.12005 1.53027 1.21569 0.86865 0.96602 0.96892 1.21453 0.94024 1.02513 0.96071 1.21940 0.95995 0.96821 1.02312 1.20831 0.99759 0.86529 0.88660 1.46105 1.24961 1.37258 1.30196 1.20284 0.83865 0.83663 0.80303 1.90691 1.22841 1.55290 1.70570 1.23532 1.06184 0.98647 1.02055 1.85378 1.25415 1.45748 1.26839 1.22871 1.09245 1.20494 1.15649 0.90969 1.24993 0.94908 0.97377 0.96368 1.70025 1.14937 1.40823 1.24532 0.86171 0.78876 0.80899 0.79568 1.20273 1.20790 1.19721 1.21777 0.94878 1.02930 0.96541 1.21709 0.96099 0.97617 1.00515 1.87898 1.87374 1.23668 1.30072 1.22833 0.99115 0.82794 1.01636 0.92691 0.91953 0.93163 0.90983 0.90825 0.90013 0.94701 0.84765 0.93968 0.90880 0.92312 0.91635 0.90762 0.89449 0.76910 0.89402 0.89302 0.92232 0.90660 0.90928 0.91997 0.90942 0.92284 0.90253 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.76 37.16 0.36 -0.54 16 2 C -0.12 -0.78 5.64 -26.73 -0.15 -0.93 16 3 C 0.09 0.67 2.43 -26.72 -0.06 0.61 16 4 H 0.06 0.35 7.64 -51.93 -0.40 -0.04 16 5 C 0.04 0.28 5.18 -3.82 -0.02 0.26 16 6 N -0.68 -5.15 4.74 -106.72 -0.51 -5.65 16 7 C 0.09 0.71 2.49 -67.71 -0.17 0.54 16 8 C -0.10 -1.06 5.27 -26.73 -0.14 -1.20 16 9 C -0.13 -1.48 5.60 -26.73 -0.15 -1.63 16 10 C 0.15 1.69 2.78 -67.93 -0.19 1.50 16 11 N -0.73 -9.73 4.23 -53.81 -0.23 -9.96 16 12 C 0.53 9.98 7.81 -10.99 -0.09 9.89 16 13 O -0.52 -11.81 15.52 5.55 0.09 -11.72 16 14 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 20 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.12 -0.98 5.61 -26.73 -0.15 -1.13 16 25 C -0.12 -0.86 5.02 -26.73 -0.13 -1.00 16 26 O -0.37 -3.61 9.91 -35.23 -0.35 -3.96 16 27 C 0.03 0.26 10.67 101.05 1.08 1.34 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.45 7.97 -51.93 -0.41 0.03 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.73 7.43 -51.93 -0.39 0.35 16 34 H 0.03 0.22 8.06 -51.93 -0.42 -0.20 16 35 H 0.33 2.10 8.14 -39.29 -0.32 1.78 16 36 H 0.04 0.33 7.80 -51.93 -0.41 -0.07 16 37 H 0.07 0.89 7.61 -51.93 -0.39 0.50 16 38 H 0.06 0.64 7.45 -51.92 -0.39 0.25 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 42 H 0.40 4.37 6.87 -40.82 -0.28 4.09 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 49 H 0.07 0.56 6.51 -51.93 -0.34 0.22 16 50 H 0.06 0.47 6.62 -51.93 -0.34 0.13 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.03 0.20 7.97 -51.93 -0.41 -0.22 16 LS Contribution 419.91 15.07 6.33 6.33 Total: -1.00 -34.19 419.91 -10.07 -44.26 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -9.51 Total: 1.94 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.61 Total: -8.30 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.00 Total: -41.29 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.26 Total: -15.68 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.19 -10.07 -44.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714181467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.399 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds