Wall clock time and date at job start Wed Apr 1 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46824 * 2 1 4 4 H 1.08993 * 109.47118 * 305.30027 * 3 2 1 5 5 C 1.53007 * 109.47021 * 185.30495 * 3 2 1 6 6 N 1.46897 * 109.46903 * 180.02562 * 5 3 2 7 7 C 1.46898 * 110.99766 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47329 * 274.99625 * 7 6 5 9 9 C 1.52999 * 109.47436 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46920 * 60.00310 * 9 8 7 11 11 N 1.46495 * 109.47513 * 60.00068 * 10 9 8 12 12 C 1.34770 * 120.00231 * 84.99650 * 11 10 9 13 13 O 1.21287 * 119.99894 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00085 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.46868 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99906 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99977 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00239 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99710 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00203 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47322 * 89.99860 * 20 18 16 22 22 H 1.48500 * 109.47534 * 210.00133 * 20 18 16 23 23 H 1.48501 * 109.47132 * 330.00119 * 20 18 16 24 24 C 1.53005 * 109.47290 * 299.99845 * 10 9 8 25 25 C 1.52999 * 109.46721 * 59.99962 * 24 10 9 26 26 O 1.42897 * 109.46971 * 65.30396 * 3 2 1 27 27 C 1.42902 * 113.99806 * 216.53320 * 26 3 2 28 28 H 1.08998 * 109.46579 * 174.93734 * 1 2 3 29 29 H 1.09001 * 109.47069 * 294.93259 * 1 2 3 30 30 H 1.08998 * 109.46899 * 54.93896 * 1 2 3 31 31 H 1.09000 * 109.47207 * 240.00117 * 2 1 3 32 32 H 1.09001 * 109.47373 * 119.99578 * 2 1 3 33 33 H 1.09002 * 109.46619 * 299.99865 * 5 3 2 34 34 H 1.08995 * 109.46961 * 59.99458 * 5 3 2 35 35 H 1.00899 * 111.00154 * 303.94740 * 6 5 3 36 36 H 1.09006 * 109.47486 * 34.99726 * 7 6 5 37 37 H 1.08996 * 109.46837 * 300.00441 * 8 7 6 38 38 H 1.09008 * 109.46682 * 59.99938 * 8 7 6 39 39 H 1.08995 * 109.46976 * 300.00110 * 9 8 7 40 40 H 1.08997 * 109.47213 * 179.97438 * 9 8 7 41 41 H 1.09003 * 109.47002 * 179.97438 * 10 9 8 42 42 H 0.97000 * 120.00212 * 265.00295 * 11 10 9 43 43 H 1.09001 * 109.46986 * 300.00168 * 14 12 11 44 44 H 1.08994 * 109.47129 * 60.00419 * 14 12 11 45 45 H 0.97001 * 119.99595 * 179.97438 * 19 18 16 46 46 H 1.09005 * 109.47156 * 300.00479 * 24 10 9 47 47 H 1.08993 * 109.47579 * 180.02562 * 24 10 9 48 48 H 1.09004 * 109.46772 * 180.02562 * 25 24 10 49 49 H 1.08996 * 109.47442 * 60.00464 * 25 24 10 50 50 H 1.09003 * 109.47228 * 294.55993 * 27 26 3 51 51 H 1.08998 * 109.47408 * 174.55850 * 27 26 3 52 52 H 1.09001 * 109.46911 * 54.55807 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6012 1.9830 -0.8387 5 6 3.5642 1.4447 -0.1334 6 7 4.0538 2.8297 -0.1328 7 6 5.5168 2.8708 -0.2589 8 6 6.1526 2.7149 1.1240 9 6 7.6763 2.7571 0.9925 10 6 8.0988 4.0963 0.3851 11 7 7.6532 5.1888 1.2534 12 6 8.4123 5.5707 2.2994 13 8 9.4647 5.0103 2.5216 14 6 7.9535 6.6942 3.1930 15 16 9.1802 6.9684 4.4954 16 6 8.4112 8.2934 5.3660 17 1 7.4601 8.6798 5.0306 18 6 9.0282 8.8412 6.4821 19 7 10.1881 8.3711 6.8900 20 14 8.2133 10.2462 7.4045 21 1 7.3345 9.6966 8.4679 22 1 9.2565 11.1056 8.0196 23 1 7.4009 11.0536 6.4593 24 6 7.4631 4.2523 -0.9978 25 6 5.9394 4.2100 -0.8663 26 8 1.6680 2.0792 1.2240 27 6 1.3183 3.4573 1.0795 28 1 -0.3632 -1.0237 -0.0907 29 1 -0.3633 0.4332 0.9319 30 1 -0.3633 0.5903 -0.8412 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0030 0.9042 0.7054 34 1 3.8478 0.9590 -1.0670 35 1 3.6124 3.3696 -0.8619 36 1 5.8488 2.0582 -0.9052 37 1 5.8205 3.5274 1.7702 38 1 5.8519 1.7606 1.5566 39 1 8.0079 1.9443 0.3464 40 1 8.1292 2.6465 1.9777 41 1 9.1844 4.1266 0.2919 42 1 6.8116 5.6372 1.0756 43 1 7.8403 7.6041 2.6036 44 1 6.9966 6.4320 3.6441 45 1 10.6195 8.7542 7.6698 46 1 7.7947 3.4395 -1.6440 47 1 7.7644 5.2061 -1.4308 48 1 5.4865 4.3207 -1.8516 49 1 5.6077 5.0228 -0.2203 50 1 2.1958 4.0241 0.7683 51 1 0.9564 3.8422 2.0329 52 1 0.5360 3.5566 0.3270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714181467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:20 Heat of formation + Delta-G solvation = -128.934359 kcal Electronic energy + Delta-G solvation = -28352.216688 eV Core-core repulsion = 24475.960236 eV Total energy + Delta-G solvation = -3876.256453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.23619 -39.80853 -38.96937 -36.28535 -34.59246 -34.54176 -33.64748 -31.81725 -31.22069 -29.72242 -28.13711 -27.63116 -26.70705 -24.12533 -23.55174 -22.44738 -22.21455 -21.81401 -20.07740 -19.86798 -17.95513 -17.83245 -17.16813 -16.90938 -16.87493 -16.56742 -16.26264 -16.00347 -15.85781 -15.58556 -15.19650 -14.99836 -14.72169 -14.53690 -14.51196 -14.13259 -14.07527 -13.71588 -13.47963 -13.30021 -13.18242 -13.15886 -13.07067 -12.89360 -12.78211 -12.59019 -12.26324 -12.15313 -12.08568 -11.90851 -11.76862 -11.72477 -11.57457 -11.26945 -11.15419 -11.13799 -10.89400 -10.33535 -10.27546 -10.02469 -9.25774 -8.66361 -8.34553 -6.12500 1.27512 1.42350 1.47330 1.58002 1.65364 2.26845 2.34903 2.99342 2.99964 3.07322 3.32997 3.69554 3.76783 3.91739 4.01159 4.07488 4.13905 4.19330 4.21923 4.28732 4.30748 4.43058 4.49608 4.50034 4.53728 4.54919 4.56877 4.58428 4.64513 4.68587 4.78677 4.91957 4.93640 4.99454 5.05793 5.09145 5.10552 5.15287 5.22839 5.23438 5.25956 5.35204 5.39126 5.41747 5.42985 5.61862 6.11576 6.19887 6.43455 6.55124 6.56909 7.06540 7.29576 8.74663 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.002188 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.552715 B =12791.277000 C =14383.851880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.092 3.908 4 H 0.071 0.929 5 C 0.042 3.958 6 N -0.688 5.688 7 C 0.098 3.902 8 C -0.097 4.097 9 C -0.126 4.126 10 C 0.143 3.857 11 N -0.704 5.704 12 C 0.534 3.466 13 O -0.567 6.567 14 C -0.130 4.130 15 S -0.150 6.150 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.112 4.112 25 C -0.116 4.116 26 O -0.398 6.398 27 C 0.032 3.968 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.346 0.654 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.271 0.729 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.361 -13.803 -23.739 34.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.034 3.966 4 H 0.089 0.911 5 C -0.087 4.087 6 N -0.320 5.320 7 C -0.011 4.011 8 C -0.135 4.135 9 C -0.165 4.165 10 C 0.039 3.961 11 N -0.358 5.358 12 C 0.320 3.680 13 O -0.445 6.445 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.151 4.151 25 C -0.154 4.154 26 O -0.317 6.317 27 C -0.064 4.064 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.249 0.751 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.494 -14.780 -22.432 32.614 hybrid contribution -1.306 1.382 -0.190 1.911 sum -19.800 -13.398 -22.621 32.913 Atomic orbital electron populations 1.21680 0.95028 1.02032 1.01678 1.21657 0.96880 0.94680 1.02963 1.22287 0.92906 0.94273 0.87146 0.91136 1.22524 0.95507 0.90039 1.00643 1.60361 1.05369 1.12375 1.53865 1.21436 0.87061 0.97631 0.95013 1.21370 0.93289 1.01160 0.97676 1.21864 0.96568 0.97494 1.00612 1.21034 0.99030 0.85642 0.90406 1.45889 1.24526 1.37006 1.28386 1.20027 0.83704 0.83121 0.81168 1.90680 1.25032 1.56775 1.72028 1.23376 1.04086 1.00470 1.00183 1.85555 1.29767 1.46511 1.30499 1.23201 1.09579 1.20513 1.16086 0.90001 1.26147 0.95450 1.00376 0.97303 1.70191 1.16740 1.42592 1.25232 0.84943 0.77880 0.76976 0.78114 1.19360 1.20224 1.18141 1.21738 0.95290 1.04234 0.93789 1.21688 0.95254 0.96680 1.01784 1.87871 1.87618 1.24502 1.31759 1.22868 0.99538 0.82129 1.01898 0.91924 0.93563 0.92307 0.89193 0.92218 0.92158 0.93004 0.83415 0.92956 0.92972 0.93289 0.89541 0.94666 0.91596 0.75095 0.87334 0.87758 0.92009 0.88649 0.90122 0.89320 0.91386 0.92333 0.90794 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.76 71.98 0.70 -0.87 16 2 C -0.12 -1.38 5.64 30.60 0.17 -1.21 16 3 C 0.09 1.16 2.43 30.60 0.07 1.24 16 4 H 0.07 0.69 7.64 -2.39 -0.02 0.67 16 5 C 0.04 0.54 5.18 86.31 0.45 0.99 16 6 N -0.69 -8.69 4.74 -491.56 -2.33 -11.02 16 7 C 0.10 1.29 2.49 44.92 0.11 1.40 16 8 C -0.10 -1.94 5.27 30.59 0.16 -1.78 16 9 C -0.13 -2.82 5.60 30.59 0.17 -2.65 16 10 C 0.14 3.16 2.78 44.99 0.13 3.28 16 11 N -0.70 -18.19 4.23 -442.53 -1.87 -20.06 16 12 C 0.53 20.26 7.81 87.66 0.68 20.95 16 13 O -0.57 -26.87 15.52 -3.05 -0.05 -26.92 16 14 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 15 S -0.15 -8.54 20.57 -56.49 -1.16 -9.71 16 16 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.69 5.49 84.86 0.47 1.15 16 19 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 20 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 C -0.11 -1.44 5.61 30.60 0.17 -1.26 16 25 C -0.12 -1.22 5.02 30.59 0.15 -1.06 16 26 O -0.40 -7.41 9.91 -148.98 -1.48 -8.89 16 27 C 0.03 0.47 10.67 113.37 1.21 1.68 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.64 7.97 -2.39 -0.02 0.62 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.04 7.43 -2.39 -0.02 1.02 16 34 H 0.05 0.50 8.06 -2.39 -0.02 0.48 16 35 H 0.35 3.13 8.14 -89.69 -0.73 2.40 16 36 H 0.05 0.63 7.80 -2.38 -0.02 0.61 16 37 H 0.05 1.26 7.61 -2.39 -0.02 1.24 16 38 H 0.05 1.07 7.45 -2.38 -0.02 1.05 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 42 H 0.41 8.25 6.87 -92.71 -0.64 7.61 16 43 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 44 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 0.57 8.12 -2.38 -0.02 0.55 16 49 H 0.07 0.80 6.51 -2.39 -0.02 0.79 16 50 H 0.06 0.84 6.62 -2.39 -0.02 0.82 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.05 0.51 7.97 -2.39 -0.02 0.49 16 Total: -1.00 -78.18 419.91 0.69 -77.49 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.47 Total: 23.43 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.74 Total: -14.13 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.92 Total: -87.55 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.52 Total: -35.80 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -78.18 0.69 -77.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714181467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.444 kcal (2) G-P(sol) polarization free energy of solvation -78.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds