Wall clock time and date at job start Wed Apr 1 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 H 1.08992 * 109.47139 * 54.99508 * 3 2 1 5 5 C 1.52999 * 109.46984 * 174.99728 * 3 2 1 6 6 N 1.46900 * 109.47165 * 184.99644 * 5 3 2 7 7 C 1.46901 * 110.99890 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46769 * 204.99887 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 N 1.46506 * 109.47075 * 59.99940 * 10 9 8 12 12 C 1.34777 * 119.99949 * 84.99839 * 11 10 9 13 13 O 1.21288 * 119.99883 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00081 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.47095 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00150 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99405 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00317 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00401 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47100 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47257 * 119.99563 * 20 18 16 23 23 H 1.48498 * 109.47149 * 240.00316 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 10 9 26 26 O 1.42901 * 109.46896 * 294.99517 * 3 2 1 27 27 C 1.42901 * 113.99832 * 150.00244 * 26 3 2 28 28 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47652 * 300.00372 * 1 2 3 30 30 H 1.09004 * 109.46753 * 60.00326 * 1 2 3 31 31 H 1.09001 * 109.47167 * 239.99468 * 2 1 3 32 32 H 1.09004 * 109.46753 * 119.99674 * 2 1 3 33 33 H 1.09005 * 109.46909 * 64.99979 * 5 3 2 34 34 H 1.09002 * 109.47167 * 305.00028 * 5 3 2 35 35 H 1.00902 * 110.99732 * 56.04321 * 6 5 3 36 36 H 1.08992 * 109.47407 * 325.00184 * 7 6 5 37 37 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 38 38 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 39 39 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 41 41 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 42 42 H 0.97000 * 119.99856 * 265.00497 * 11 10 9 43 43 H 1.08990 * 109.47220 * 300.00183 * 14 12 11 44 44 H 1.08997 * 109.47263 * 60.00729 * 14 12 11 45 45 H 0.97003 * 119.99634 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.46935 * 299.99411 * 24 10 9 47 47 H 1.09001 * 109.46812 * 179.97438 * 24 10 9 48 48 H 1.08993 * 109.47194 * 179.97438 * 25 24 10 49 49 H 1.09002 * 109.46695 * 59.99734 * 25 24 10 50 50 H 1.08997 * 109.47058 * 180.02562 * 27 26 3 51 51 H 1.08997 * 109.46747 * 299.99852 * 27 26 3 52 52 H 1.08997 * 109.47218 * 60.00248 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0446 2.8275 0.2461 7 6 5.5079 2.8684 0.3685 8 6 5.9236 4.1517 1.0904 9 6 7.4477 4.1946 1.2174 10 6 8.0766 4.1673 -0.1771 11 7 7.6175 5.3290 -0.9427 12 6 8.2534 6.5109 -0.8203 13 8 9.2060 6.6128 -0.0765 14 6 7.7807 7.7060 -1.6073 15 16 8.8307 9.1311 -1.2293 16 6 8.0746 10.3487 -2.2542 17 1 7.2209 10.0881 -2.8622 18 6 8.5761 11.6426 -2.2801 19 7 9.6170 11.9599 -1.5393 20 14 7.7742 12.9336 -3.3661 21 1 6.6308 12.3271 -4.0941 22 1 7.2864 14.0553 -2.5239 23 1 8.7680 13.4446 -4.3440 24 6 7.6608 2.8840 -0.8991 25 6 6.1367 2.8411 -1.0261 26 8 1.6620 2.0813 -1.2211 27 6 1.4560 3.4902 -1.1004 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.0029 0.9835 -0.7596 34 1 3.8570 0.8800 1.0114 35 1 3.6031 3.2971 1.0225 36 1 5.8492 2.0041 0.9382 37 1 5.5823 5.0160 0.5206 38 1 5.4753 4.1713 2.0838 39 1 7.7440 5.1086 1.7320 40 1 7.7894 3.3303 1.7869 41 1 9.1625 4.1974 -0.0867 42 1 6.8557 5.2474 -1.5377 43 1 7.8385 7.4851 -2.6730 44 1 6.7491 7.9330 -1.3387 45 1 9.9677 12.8641 -1.5577 46 1 8.0025 2.0197 -0.3296 47 1 8.1086 2.8649 -1.8928 48 1 5.8406 1.9271 -1.5408 49 1 5.7952 3.7055 -1.5956 50 1 1.1716 3.9001 -2.0695 51 1 0.6619 3.6807 -0.3786 52 1 2.3769 3.9643 -0.7611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714181468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:26 Heat of formation + Delta-G solvation = -105.990595 kcal Electronic energy + Delta-G solvation = -28318.413694 eV Core-core repulsion = 24443.152158 eV Total energy + Delta-G solvation = -3875.261536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17069 -39.03633 -37.96239 -35.42894 -33.94793 -32.60035 -32.40828 -31.05551 -30.10991 -28.62610 -27.37566 -26.06119 -25.45126 -23.53854 -22.76522 -21.71911 -21.38423 -20.84606 -19.09944 -17.87482 -17.27463 -16.54487 -16.22985 -15.94430 -15.67006 -15.43139 -15.22082 -14.79081 -14.70977 -14.42798 -14.20188 -14.02602 -13.98259 -13.54970 -13.42752 -13.12486 -12.87351 -12.69579 -12.63999 -12.46445 -12.36324 -12.09957 -11.89976 -11.70995 -11.57101 -11.42334 -11.30995 -11.06270 -11.04325 -11.00060 -10.93730 -10.74217 -10.60934 -10.31340 -9.78405 -9.77719 -9.32942 -9.06131 -8.79716 -8.69699 -8.20634 -6.47646 -6.20330 -3.90295 3.08491 3.15432 3.22575 3.29708 3.35205 3.54522 3.62442 3.79601 4.22071 4.36665 4.50188 4.56907 4.63332 4.67637 4.83820 4.90697 4.92669 5.05213 5.08221 5.10798 5.14935 5.18638 5.19586 5.26956 5.27755 5.30105 5.35800 5.42687 5.48343 5.53464 5.54965 5.64969 5.67455 5.70861 5.75445 5.82533 5.89697 5.91464 5.96986 5.97903 6.01289 6.14943 6.17760 6.19559 6.69045 6.76737 6.94614 7.05077 7.61631 7.79883 8.37180 8.68711 9.25282 10.87140 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002098 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.209216 B =13341.980143 C =14898.325636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.093 3.907 4 H 0.056 0.944 5 C 0.036 3.964 6 N -0.683 5.683 7 C 0.090 3.910 8 C -0.119 4.119 9 C -0.128 4.128 10 C 0.147 3.853 11 N -0.730 5.730 12 C 0.532 3.468 13 O -0.520 6.520 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.127 4.127 25 C -0.106 4.106 26 O -0.376 6.376 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.338 0.662 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.397 0.603 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.029 0.971 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.809 -25.852 4.330 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.094 4.094 6 N -0.314 5.314 7 C -0.020 4.020 8 C -0.157 4.157 9 C -0.167 4.167 10 C 0.042 3.958 11 N -0.386 5.386 12 C 0.318 3.682 13 O -0.394 6.394 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.165 4.165 25 C -0.144 4.144 26 O -0.295 6.295 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.156 0.844 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.048 0.952 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.105 -25.538 4.777 29.563 hybrid contribution -1.848 0.568 -0.652 2.040 sum -15.953 -24.970 4.125 29.917 Atomic orbital electron populations 1.21707 0.95165 1.01616 1.02209 1.21589 0.96790 0.94851 1.02700 1.22136 0.92798 0.93909 0.87735 0.92554 1.22641 0.95709 0.89880 1.01128 1.60528 1.05990 1.15663 1.49249 1.21562 0.86811 0.97327 0.96261 1.21670 0.96386 0.97767 0.99841 1.21883 0.94709 1.02836 0.97267 1.20830 0.99691 0.84746 0.90506 1.46131 1.35227 1.09758 1.47437 1.20293 0.82467 0.83481 0.81918 1.90692 1.27006 1.83851 1.37882 1.23530 1.05516 0.99010 1.02362 1.85378 1.39948 0.98671 1.59443 1.22915 1.18659 0.96779 1.29873 0.90900 1.24993 0.94975 0.97777 0.95899 1.70035 1.22305 1.20070 1.37916 0.86121 0.79108 0.80529 0.79766 1.19609 1.20586 1.20587 1.21836 0.96198 0.97129 1.01349 1.21497 0.93944 1.02521 0.96430 1.87866 1.89124 1.21033 1.31445 1.22904 1.00669 0.81567 1.01750 0.92701 0.93098 0.91880 0.90942 0.90938 0.90055 0.94630 0.84396 0.93891 0.90670 0.92336 0.90716 0.91475 0.89450 0.76786 0.89345 0.89351 0.92277 0.90796 0.90965 0.91920 0.91181 0.90379 0.95190 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.81 37.16 0.36 -0.51 16 2 C -0.12 -0.72 5.64 -26.73 -0.15 -0.87 16 3 C 0.09 0.65 2.41 -26.73 -0.06 0.58 16 4 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 5 C 0.04 0.25 5.15 -3.82 -0.02 0.23 16 6 N -0.68 -5.00 4.31 -106.72 -0.46 -5.46 16 7 C 0.09 0.69 2.50 -67.71 -0.17 0.53 16 8 C -0.12 -1.07 5.04 -26.73 -0.13 -1.21 16 9 C -0.13 -1.36 5.60 -26.73 -0.15 -1.51 16 10 C 0.15 1.68 2.78 -67.93 -0.19 1.49 16 11 N -0.73 -9.65 4.23 -53.80 -0.23 -9.88 16 12 C 0.53 9.84 7.81 -10.99 -0.09 9.76 16 13 O -0.52 -11.67 15.53 5.55 0.09 -11.58 16 14 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 20 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.13 -1.07 5.61 -26.73 -0.15 -1.22 16 25 C -0.11 -0.86 5.25 -26.73 -0.14 -1.00 16 26 O -0.38 -3.46 9.88 -35.23 -0.35 -3.81 16 27 C 0.03 0.22 10.69 101.05 1.08 1.30 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.64 7.44 -51.93 -0.39 0.25 16 34 H 0.04 0.22 8.06 -51.93 -0.42 -0.20 16 35 H 0.34 2.28 8.28 -39.29 -0.33 1.96 16 36 H 0.04 0.33 7.80 -51.93 -0.41 -0.07 16 37 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 38 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 42 H 0.40 4.41 6.87 -40.82 -0.28 4.13 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 49 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.03 0.21 8.08 -51.93 -0.42 -0.21 16 52 H 0.07 0.57 6.20 -51.93 -0.32 0.24 16 LS Contribution 419.31 15.07 6.32 6.32 Total: -1.00 -33.62 419.31 -10.02 -43.63 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -9.50 Total: 2.02 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.61 Total: -8.33 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.05 Total: -40.88 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.26 Total: -15.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.62 -10.02 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714181468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.357 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds