Wall clock time and date at job start Wed Apr 1 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 H 1.08992 * 109.47139 * 54.99508 * 3 2 1 5 5 C 1.52999 * 109.46984 * 174.99728 * 3 2 1 6 6 N 1.46900 * 109.47165 * 184.99644 * 5 3 2 7 7 C 1.46901 * 110.99890 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46769 * 204.99887 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 N 1.46506 * 109.47075 * 59.99940 * 10 9 8 12 12 C 1.34777 * 119.99949 * 84.99839 * 11 10 9 13 13 O 1.21288 * 119.99883 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00081 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.47095 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00150 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99405 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00317 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00401 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47100 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47257 * 119.99563 * 20 18 16 23 23 H 1.48498 * 109.47149 * 240.00316 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 10 9 26 26 O 1.42901 * 109.46896 * 294.99517 * 3 2 1 27 27 C 1.42901 * 113.99832 * 150.00244 * 26 3 2 28 28 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47652 * 300.00372 * 1 2 3 30 30 H 1.09004 * 109.46753 * 60.00326 * 1 2 3 31 31 H 1.09001 * 109.47167 * 239.99468 * 2 1 3 32 32 H 1.09004 * 109.46753 * 119.99674 * 2 1 3 33 33 H 1.09005 * 109.46909 * 64.99979 * 5 3 2 34 34 H 1.09002 * 109.47167 * 305.00028 * 5 3 2 35 35 H 1.00902 * 110.99732 * 56.04321 * 6 5 3 36 36 H 1.08992 * 109.47407 * 325.00184 * 7 6 5 37 37 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 38 38 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 39 39 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 41 41 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 42 42 H 0.97000 * 119.99856 * 265.00497 * 11 10 9 43 43 H 1.08990 * 109.47220 * 300.00183 * 14 12 11 44 44 H 1.08997 * 109.47263 * 60.00729 * 14 12 11 45 45 H 0.97003 * 119.99634 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.46935 * 299.99411 * 24 10 9 47 47 H 1.09001 * 109.46812 * 179.97438 * 24 10 9 48 48 H 1.08993 * 109.47194 * 179.97438 * 25 24 10 49 49 H 1.09002 * 109.46695 * 59.99734 * 25 24 10 50 50 H 1.08997 * 109.47058 * 180.02562 * 27 26 3 51 51 H 1.08997 * 109.46747 * 299.99852 * 27 26 3 52 52 H 1.08997 * 109.47218 * 60.00248 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0446 2.8275 0.2461 7 6 5.5079 2.8684 0.3685 8 6 5.9236 4.1517 1.0904 9 6 7.4477 4.1946 1.2174 10 6 8.0766 4.1673 -0.1771 11 7 7.6175 5.3290 -0.9427 12 6 8.2534 6.5109 -0.8203 13 8 9.2060 6.6128 -0.0765 14 6 7.7807 7.7060 -1.6073 15 16 8.8307 9.1311 -1.2293 16 6 8.0746 10.3487 -2.2542 17 1 7.2209 10.0881 -2.8622 18 6 8.5761 11.6426 -2.2801 19 7 9.6170 11.9599 -1.5393 20 14 7.7742 12.9336 -3.3661 21 1 6.6308 12.3271 -4.0941 22 1 7.2864 14.0553 -2.5239 23 1 8.7680 13.4446 -4.3440 24 6 7.6608 2.8840 -0.8991 25 6 6.1367 2.8411 -1.0261 26 8 1.6620 2.0813 -1.2211 27 6 1.4560 3.4902 -1.1004 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.0029 0.9835 -0.7596 34 1 3.8570 0.8800 1.0114 35 1 3.6031 3.2971 1.0225 36 1 5.8492 2.0041 0.9382 37 1 5.5823 5.0160 0.5206 38 1 5.4753 4.1713 2.0838 39 1 7.7440 5.1086 1.7320 40 1 7.7894 3.3303 1.7869 41 1 9.1625 4.1974 -0.0867 42 1 6.8557 5.2474 -1.5377 43 1 7.8385 7.4851 -2.6730 44 1 6.7491 7.9330 -1.3387 45 1 9.9677 12.8641 -1.5577 46 1 8.0025 2.0197 -0.3296 47 1 8.1086 2.8649 -1.8928 48 1 5.8406 1.9271 -1.5408 49 1 5.7952 3.7055 -1.5956 50 1 1.1716 3.9001 -2.0695 51 1 0.6619 3.6807 -0.3786 52 1 2.3769 3.9643 -0.7611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714181468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:25 Heat of formation + Delta-G solvation = -128.256906 kcal Electronic energy + Delta-G solvation = -28319.379234 eV Core-core repulsion = 24443.152158 eV Total energy + Delta-G solvation = -3876.227076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23563 -39.81874 -38.96030 -36.27057 -34.59420 -34.54548 -33.64784 -31.81591 -31.21280 -29.70426 -28.13851 -27.63373 -26.68168 -24.16216 -23.45212 -22.57255 -22.11649 -21.80813 -20.07589 -19.86824 -17.94900 -17.83438 -17.16982 -16.89022 -16.85820 -16.57034 -16.28348 -16.02328 -15.84892 -15.60964 -15.17211 -14.97572 -14.70014 -14.53732 -14.52500 -14.11437 -14.03390 -13.73082 -13.47431 -13.27437 -13.19822 -13.15871 -13.07283 -12.91511 -12.80815 -12.56799 -12.26083 -12.14844 -12.04868 -11.90651 -11.72394 -11.71281 -11.57900 -11.36223 -11.15993 -11.09383 -10.89049 -10.37679 -10.27022 -10.01601 -9.25222 -8.66157 -8.34938 -6.12579 1.27726 1.41036 1.47418 1.58812 1.65446 2.26469 2.34999 2.99163 3.00367 3.05846 3.32911 3.67449 3.79621 3.94453 3.97637 4.07568 4.15205 4.16463 4.22617 4.28757 4.32076 4.44141 4.48867 4.50759 4.54057 4.56852 4.59335 4.59928 4.64449 4.68541 4.81394 4.93433 4.95027 4.99842 5.08361 5.10138 5.11560 5.16233 5.22096 5.23597 5.26176 5.33232 5.41985 5.42427 5.44348 5.61256 6.11784 6.20049 6.39343 6.50208 6.54974 7.06541 7.29283 8.74510 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002098 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.209216 B =13341.980143 C =14898.325636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.091 3.909 4 H 0.062 0.938 5 C 0.041 3.959 6 N -0.688 5.688 7 C 0.098 3.902 8 C -0.112 4.112 9 C -0.124 4.124 10 C 0.143 3.857 11 N -0.704 5.704 12 C 0.535 3.465 13 O -0.566 6.566 14 C -0.130 4.130 15 S -0.149 6.149 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.115 4.115 25 C -0.102 4.102 26 O -0.396 6.396 27 C 0.028 3.972 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.342 0.658 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.411 0.589 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.037 0.963 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.884 -27.521 3.690 33.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.033 3.967 4 H 0.080 0.920 5 C -0.088 4.088 6 N -0.319 5.319 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.163 4.163 10 C 0.039 3.961 11 N -0.359 5.359 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.282 4.282 15 S 0.078 5.922 16 C -0.693 4.693 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.153 4.153 25 C -0.140 4.140 26 O -0.315 6.315 27 C -0.068 4.068 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.249 0.751 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.056 0.944 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.222 -27.258 4.125 31.987 hybrid contribution -1.240 0.948 -0.413 1.614 sum -17.462 -26.310 3.713 31.795 Atomic orbital electron populations 1.21691 0.95240 1.02005 1.01641 1.21607 0.96712 0.94277 1.03181 1.22255 0.92983 0.94352 0.87143 0.92022 1.22586 0.95441 0.89553 1.01250 1.60493 1.05626 1.16190 1.49638 1.21447 0.87187 0.96672 0.95838 1.21588 0.94947 0.98010 1.00423 1.21820 0.95953 1.02083 0.96429 1.21027 0.98632 0.85106 0.91335 1.45921 1.34504 1.08633 1.46827 1.20010 0.82226 0.84379 0.81323 1.90681 1.29198 1.84621 1.39913 1.23377 1.04523 0.96581 1.03684 1.85541 1.43289 1.02800 1.60560 1.23237 1.18887 0.97302 1.29923 0.90035 1.26128 0.95444 1.00292 0.97330 1.70194 1.24017 1.20830 1.39716 0.84906 0.78340 0.77098 0.77609 1.18079 1.19868 1.19915 1.21774 0.96545 0.95697 1.01322 1.21467 0.93417 1.02500 0.96650 1.87842 1.89332 1.21527 1.32824 1.22905 1.00759 0.81208 1.01937 0.91868 0.92687 0.93389 0.91567 0.89297 0.90933 0.93331 0.83894 0.92923 0.92210 0.91403 0.94088 0.89382 0.91616 0.75139 0.87561 0.87572 0.92002 0.88807 0.90720 0.91176 0.92025 0.90517 0.94414 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 71.98 0.71 -0.80 16 2 C -0.12 -1.18 5.64 30.59 0.17 -1.01 16 3 C 0.09 1.09 2.41 30.59 0.07 1.16 16 4 H 0.06 0.67 7.79 -2.39 -0.02 0.65 16 5 C 0.04 0.46 5.15 86.30 0.44 0.90 16 6 N -0.69 -8.44 4.31 -491.56 -2.12 -10.55 16 7 C 0.10 1.26 2.50 44.92 0.11 1.37 16 8 C -0.11 -1.82 5.04 30.59 0.15 -1.67 16 9 C -0.12 -2.51 5.60 30.59 0.17 -2.34 16 10 C 0.14 3.13 2.78 44.99 0.13 3.25 16 11 N -0.70 -18.03 4.23 -442.51 -1.87 -19.90 16 12 C 0.53 19.92 7.81 87.66 0.68 20.61 16 13 O -0.57 -26.31 15.53 -3.06 -0.05 -26.36 16 14 C -0.13 -5.27 6.16 71.23 0.44 -4.83 16 15 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 16 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.73 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 20 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.12 -1.66 5.61 30.60 0.17 -1.49 16 25 C -0.10 -1.39 5.25 30.59 0.16 -1.23 16 26 O -0.40 -6.78 9.88 -148.98 -1.47 -8.25 16 27 C 0.03 0.42 10.69 113.37 1.21 1.63 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.63 7.82 -2.38 -0.02 0.61 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.97 7.44 -2.38 -0.02 0.95 16 34 H 0.05 0.43 8.06 -2.39 -0.02 0.42 16 35 H 0.34 3.82 8.28 -89.69 -0.74 3.08 16 36 H 0.05 0.62 7.80 -2.39 -0.02 0.60 16 37 H 0.06 1.17 7.60 -2.39 -0.02 1.15 16 38 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 39 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 42 H 0.41 8.42 6.87 -92.71 -0.64 7.78 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 0.92 7.45 -2.39 -0.02 0.90 16 49 H 0.06 0.96 6.51 -2.39 -0.02 0.94 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.04 0.48 8.08 -2.39 -0.02 0.46 16 52 H 0.07 0.99 6.20 -2.39 -0.01 0.97 16 Total: -1.00 -75.34 419.31 0.90 -74.44 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.48 Total: 24.29 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.74 Total: -14.10 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.70 Total: -86.49 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.52 Total: -34.61 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -75.34 0.90 -74.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714181468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.815 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds