Wall clock time and date at job start Wed Apr 1 2020 04:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47062 * 2 1 4 4 N 1.46498 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00245 * 98.93383 * 4 3 2 6 6 O 1.21548 * 120.00135 * 187.40079 * 5 4 3 7 7 C 1.47851 * 119.99987 * 7.39634 * 5 4 3 8 8 C 1.39600 * 120.13345 * 329.41970 * 7 5 4 9 9 C 1.37988 * 119.89307 * 180.26939 * 8 7 5 10 10 C 1.38140 * 120.10897 * 359.97438 * 9 8 7 11 11 C 1.38748 * 120.27424 * 0.02562 * 10 9 8 12 12 C 1.37701 * 120.18745 * 359.97438 * 11 10 9 13 13 C 1.51121 * 107.25375 * 179.97438 * 11 10 9 14 14 O 1.43935 * 105.95398 * 342.28567 * 13 11 10 15 15 C 1.43922 * 104.97203 * 28.51681 * 14 13 11 16 16 C 1.46502 * 119.99731 * 278.92375 * 4 3 2 17 17 H 1.09000 * 110.88964 * 19.32024 * 16 4 3 18 18 C 1.55153 * 111.00914 * 255.43064 * 16 4 3 19 19 C 1.54327 * 102.94399 * 277.43409 * 18 16 4 20 20 N 1.47022 * 107.26890 * 337.80297 * 19 18 16 21 21 C 1.36936 * 125.64807 * 178.99053 * 20 19 18 22 22 H 1.07996 * 120.00072 * 179.97438 * 21 20 19 23 23 C 1.38816 * 120.00155 * 359.97438 * 21 20 19 24 24 N 1.31624 * 119.99530 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00393 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46915 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47278 * 119.99527 * 25 23 21 28 28 H 1.48498 * 109.47041 * 240.00320 * 25 23 21 29 29 C 1.47420 * 108.70582 * 358.94164 * 20 19 18 30 30 H 1.08999 * 109.47298 * 59.99754 * 1 2 3 31 31 H 1.08999 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46876 * 299.99628 * 1 2 3 33 33 H 1.09006 * 109.46895 * 240.00039 * 2 1 3 34 34 H 1.08999 * 109.47298 * 120.00246 * 2 1 3 35 35 H 1.08998 * 109.46972 * 60.00431 * 3 2 1 36 36 H 1.08999 * 109.47265 * 300.00266 * 3 2 1 37 37 H 1.07999 * 120.04886 * 0.25152 * 8 7 5 38 38 H 1.08005 * 119.94797 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.10139 * 180.02562 * 12 11 10 40 40 H 1.09005 * 110.15095 * 101.40338 * 13 11 10 41 41 H 1.08994 * 110.15361 * 223.15934 * 13 11 10 42 42 H 1.08998 * 110.15693 * 212.35004 * 15 14 13 43 43 H 1.09000 * 110.21639 * 90.62507 * 15 14 13 44 44 H 1.09005 * 110.71447 * 35.79070 * 18 16 4 45 45 H 1.08998 * 110.72466 * 159.06288 * 18 16 4 46 46 H 1.09000 * 109.88463 * 97.22268 * 19 18 16 47 47 H 1.09001 * 109.87823 * 218.23404 * 19 18 16 48 48 H 0.97005 * 119.99846 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.37089 * 265.29652 * 29 20 19 50 50 H 1.08998 * 110.36982 * 142.96411 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.6239 -1.1539 6 8 5.3862 1.4906 -1.1797 7 6 3.4479 1.9849 -2.3876 8 6 2.1369 1.5455 -2.5798 9 6 1.4617 1.8808 -3.7355 10 6 2.0808 2.6503 -4.7013 11 6 3.3836 3.0902 -4.5162 12 6 4.0683 2.7625 -3.3673 13 6 3.7625 3.8956 -5.7374 14 8 2.8125 3.5378 -6.7578 15 6 1.6184 3.1723 -6.0423 16 6 4.2379 1.2455 1.2525 17 1 3.6003 0.7858 2.0076 18 6 4.8318 2.5837 1.7658 19 6 6.1382 2.7158 0.9549 20 7 6.5121 1.3664 0.5069 21 6 7.6029 1.0536 -0.2595 22 1 7.7917 0.0270 -0.5368 23 6 8.4662 2.0560 -0.6802 24 7 8.2359 3.3072 -0.3427 25 14 9.9538 1.6295 -1.7262 26 1 9.9868 0.1642 -1.9657 27 1 9.8658 2.3421 -3.0260 28 1 11.1919 2.0427 -1.0179 29 6 5.5188 0.4056 1.0203 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 1.6520 0.9439 -1.8252 38 1 0.4472 1.5416 -3.8850 39 1 5.0823 3.1060 -3.2245 40 1 3.6961 4.9616 -5.5196 41 1 4.7723 3.6393 -6.0578 42 1 1.0801 2.3938 -6.5830 43 1 0.9793 4.0446 -5.9057 44 1 4.1581 3.4128 1.5492 45 1 5.0445 2.5270 2.8333 46 1 5.9752 3.3612 0.0918 47 1 6.9250 3.1311 1.5847 48 1 8.8389 4.0078 -0.6369 49 1 5.8620 -0.0300 1.9587 50 1 5.3315 -0.3762 0.2842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714872946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:49 Heat of formation + Delta-G solvation = 59.046698 kcal Electronic energy + Delta-G solvation = -32249.030038 eV Core-core repulsion = 28245.481104 eV Total energy + Delta-G solvation = -4003.548934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.90517 -39.82305 -37.48922 -36.09701 -35.75678 -32.93996 -31.75878 -31.50597 -31.02153 -28.95216 -27.98173 -27.42955 -25.92168 -25.21686 -24.17034 -22.41215 -21.75042 -21.55985 -20.82231 -19.81178 -18.40889 -17.15846 -16.81314 -16.46690 -16.46040 -16.16809 -15.32393 -14.96419 -14.67727 -14.54981 -14.36869 -14.15564 -13.62438 -13.60454 -13.35317 -13.28751 -12.91851 -12.83328 -12.65064 -12.39290 -12.03500 -11.97094 -11.80976 -11.72446 -11.61502 -11.46648 -11.12920 -10.83023 -10.81217 -10.70637 -10.68127 -10.61046 -10.09074 -9.97209 -9.93086 -9.72382 -9.42328 -8.85656 -8.77273 -8.45768 -8.21696 -7.90356 -6.25344 -5.41601 -2.64054 0.99094 1.34733 3.27659 3.40603 3.54825 3.60396 3.62047 3.82429 4.02287 4.18807 4.57819 4.74076 4.77193 4.80091 4.91878 4.94734 5.17906 5.19971 5.20249 5.24238 5.35736 5.39376 5.47041 5.50049 5.53812 5.57391 5.66665 5.71179 5.73772 5.81195 5.86196 5.89810 5.94896 6.02294 6.04360 6.15466 6.25671 6.26186 6.30584 6.48856 6.53922 6.60335 6.63779 6.66885 6.80026 6.90016 7.31551 7.77271 7.82885 8.02345 8.07028 8.53296 9.12955 9.50794 10.12271 10.78308 11.72068 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.005138 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.616493 B = 5447.812862 C = 8036.575939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.080 3.920 4 N -0.605 5.605 5 C 0.501 3.499 6 O -0.400 6.400 7 C -0.103 4.103 8 C -0.126 4.126 9 C -0.105 4.105 10 C -0.129 4.129 11 C -0.138 4.138 12 C -0.039 4.039 13 C 0.092 3.908 14 O -0.363 6.363 15 C 0.092 3.908 16 C 0.133 3.867 17 H 0.080 0.920 18 C -0.161 4.161 19 C 0.186 3.814 20 N -0.560 5.560 21 C -0.172 4.172 22 H 0.068 0.932 23 C -0.015 4.015 24 N -0.928 5.928 25 Si 0.900 3.100 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.296 1.296 29 C 0.136 3.864 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.036 0.964 48 H 0.243 0.757 49 H 0.023 0.977 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 -1.762 -2.777 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C -0.043 4.043 4 N -0.342 5.342 5 C 0.286 3.714 6 O -0.265 6.265 7 C -0.106 4.106 8 C -0.144 4.144 9 C -0.123 4.123 10 C -0.129 4.129 11 C -0.139 4.139 12 C -0.058 4.058 13 C 0.016 3.984 14 O -0.282 6.282 15 C 0.016 3.984 16 C 0.028 3.972 17 H 0.098 0.902 18 C -0.201 4.201 19 C 0.062 3.938 20 N -0.285 5.285 21 C -0.301 4.301 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.224 1.224 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.178 0.822 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.040 0.960 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.247 -1.736 -3.148 19.580 hybrid contribution 0.531 -0.075 -0.376 0.654 sum -18.716 -1.811 -3.523 19.131 Atomic orbital electron populations 1.21745 0.95317 1.01920 1.01951 1.22070 0.95810 0.97946 1.03104 1.22373 0.81487 0.96405 1.04071 1.47622 1.04881 1.74487 1.07161 1.18611 0.88704 0.81085 0.83049 1.91663 1.09994 1.43048 1.81829 1.20374 0.94165 0.99486 0.96606 1.22348 0.94023 1.00476 0.97535 1.20281 1.00104 0.98885 0.93036 1.21169 0.95498 0.99039 0.97206 1.20913 0.95567 1.00468 0.96916 1.20539 1.00056 0.94749 0.90463 1.21763 0.94320 0.97772 0.84589 1.89060 1.23055 1.87619 1.28451 1.21733 0.88441 0.99400 0.88851 1.22268 0.93414 0.97101 0.84379 0.90210 1.23384 1.00349 0.96457 0.99901 1.21033 0.89666 0.87817 0.95325 1.44163 1.25262 1.01170 1.57858 1.18846 0.96873 0.92560 1.21828 0.91376 1.24563 0.99258 0.95433 1.01679 1.69959 1.38265 0.98664 1.51006 0.86177 0.83219 0.77046 0.80250 1.20988 1.22336 1.22418 1.21704 0.88097 0.93055 0.96317 0.92634 0.92474 0.92446 0.91337 0.91081 0.91369 0.87878 0.82151 0.85731 0.84272 0.90404 0.88205 0.88696 0.90673 0.92419 0.91894 0.93838 0.94620 0.94605 0.95970 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.84 37.16 0.37 -0.72 16 2 C -0.15 -1.45 5.29 -26.73 -0.14 -1.60 16 3 C 0.08 0.92 4.85 -4.04 -0.02 0.90 16 4 N -0.60 -9.77 2.56 -164.77 -0.42 -10.19 16 5 C 0.50 9.79 6.78 -12.33 -0.08 9.70 16 6 O -0.40 -9.88 9.03 5.32 0.05 -9.83 16 7 C -0.10 -1.72 5.59 -104.94 -0.59 -2.31 16 8 C -0.13 -1.63 7.50 -39.16 -0.29 -1.92 16 9 C -0.10 -1.20 10.03 -39.71 -0.40 -1.60 16 10 C -0.13 -1.62 6.33 -104.25 -0.66 -2.28 16 11 C -0.14 -2.03 6.31 -104.42 -0.66 -2.69 16 12 C -0.04 -0.68 9.59 -39.26 -0.38 -1.05 16 13 C 0.09 1.18 7.63 36.21 0.28 1.46 16 14 O -0.36 -4.79 11.72 -35.23 -0.41 -5.20 16 15 C 0.09 0.98 7.63 36.22 0.28 1.26 16 16 C 0.13 2.27 3.75 -65.78 -0.25 2.03 16 17 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 18 C -0.16 -3.04 6.61 -24.90 -0.16 -3.21 16 19 C 0.19 4.66 4.35 -3.06 -0.01 4.65 16 20 N -0.56 -14.55 1.71 -170.07 -0.29 -14.84 16 21 C -0.17 -4.99 8.38 -15.06 -0.13 -5.12 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16 24 N -0.93 -28.40 10.31 55.49 0.57 -27.83 16 25 Si 0.90 23.58 29.55 -169.99 -5.02 18.56 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 C 0.14 2.87 5.99 -2.53 -0.02 2.86 16 30 H 0.05 0.35 7.86 -51.93 -0.41 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.73 7.14 -51.93 -0.37 0.36 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 36 H 0.10 1.15 3.93 -52.38 -0.21 0.95 16 37 H 0.16 1.75 2.34 -52.49 -0.12 1.62 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.14 2.73 7.93 -52.49 -0.42 2.31 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 1.24 6.69 -51.93 -0.35 0.89 16 47 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 48 H 0.24 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.04 0.85 7.70 -51.93 -0.40 0.45 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -34.32 381.01 -10.45 -44.76 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.70 Total: -0.99 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.96 Total: -0.18 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.14 Total: -52.85 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.36 Total: -15.03 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.32 -10.45 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714872946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.808 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds