Wall clock time and date at job start Wed Apr 1 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47062 * 2 1 4 4 N 1.46498 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00245 * 98.93383 * 4 3 2 6 6 O 1.21548 * 120.00135 * 187.40079 * 5 4 3 7 7 C 1.47851 * 119.99987 * 7.39634 * 5 4 3 8 8 C 1.39600 * 120.13345 * 329.41970 * 7 5 4 9 9 C 1.37988 * 119.89307 * 180.26939 * 8 7 5 10 10 C 1.38140 * 120.10897 * 359.97438 * 9 8 7 11 11 C 1.38748 * 120.27424 * 0.02562 * 10 9 8 12 12 C 1.37701 * 120.18745 * 359.97438 * 11 10 9 13 13 C 1.51121 * 107.25375 * 179.97438 * 11 10 9 14 14 O 1.43935 * 105.95398 * 342.28567 * 13 11 10 15 15 C 1.43922 * 104.97203 * 28.51681 * 14 13 11 16 16 C 1.46502 * 119.99731 * 278.92375 * 4 3 2 17 17 H 1.09000 * 110.88964 * 19.32024 * 16 4 3 18 18 C 1.55153 * 111.00914 * 255.43064 * 16 4 3 19 19 C 1.54327 * 102.94399 * 277.43409 * 18 16 4 20 20 N 1.47022 * 107.26890 * 337.80297 * 19 18 16 21 21 C 1.36936 * 125.64807 * 178.99053 * 20 19 18 22 22 H 1.07996 * 120.00072 * 179.97438 * 21 20 19 23 23 C 1.38816 * 120.00155 * 359.97438 * 21 20 19 24 24 N 1.31624 * 119.99530 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00393 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46915 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47278 * 119.99527 * 25 23 21 28 28 H 1.48498 * 109.47041 * 240.00320 * 25 23 21 29 29 C 1.47420 * 108.70582 * 358.94164 * 20 19 18 30 30 H 1.08999 * 109.47298 * 59.99754 * 1 2 3 31 31 H 1.08999 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46876 * 299.99628 * 1 2 3 33 33 H 1.09006 * 109.46895 * 240.00039 * 2 1 3 34 34 H 1.08999 * 109.47298 * 120.00246 * 2 1 3 35 35 H 1.08998 * 109.46972 * 60.00431 * 3 2 1 36 36 H 1.08999 * 109.47265 * 300.00266 * 3 2 1 37 37 H 1.07999 * 120.04886 * 0.25152 * 8 7 5 38 38 H 1.08005 * 119.94797 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.10139 * 180.02562 * 12 11 10 40 40 H 1.09005 * 110.15095 * 101.40338 * 13 11 10 41 41 H 1.08994 * 110.15361 * 223.15934 * 13 11 10 42 42 H 1.08998 * 110.15693 * 212.35004 * 15 14 13 43 43 H 1.09000 * 110.21639 * 90.62507 * 15 14 13 44 44 H 1.09005 * 110.71447 * 35.79070 * 18 16 4 45 45 H 1.08998 * 110.72466 * 159.06288 * 18 16 4 46 46 H 1.09000 * 109.88463 * 97.22268 * 19 18 16 47 47 H 1.09001 * 109.87823 * 218.23404 * 19 18 16 48 48 H 0.97005 * 119.99846 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.37089 * 265.29652 * 29 20 19 50 50 H 1.08998 * 110.36982 * 142.96411 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.6239 -1.1539 6 8 5.3862 1.4906 -1.1797 7 6 3.4479 1.9849 -2.3876 8 6 2.1369 1.5455 -2.5798 9 6 1.4617 1.8808 -3.7355 10 6 2.0808 2.6503 -4.7013 11 6 3.3836 3.0902 -4.5162 12 6 4.0683 2.7625 -3.3673 13 6 3.7625 3.8956 -5.7374 14 8 2.8125 3.5378 -6.7578 15 6 1.6184 3.1723 -6.0423 16 6 4.2379 1.2455 1.2525 17 1 3.6003 0.7858 2.0076 18 6 4.8318 2.5837 1.7658 19 6 6.1382 2.7158 0.9549 20 7 6.5121 1.3664 0.5069 21 6 7.6029 1.0536 -0.2595 22 1 7.7917 0.0270 -0.5368 23 6 8.4662 2.0560 -0.6802 24 7 8.2359 3.3072 -0.3427 25 14 9.9538 1.6295 -1.7262 26 1 9.9868 0.1642 -1.9657 27 1 9.8658 2.3421 -3.0260 28 1 11.1919 2.0427 -1.0179 29 6 5.5188 0.4056 1.0203 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 1.6520 0.9439 -1.8252 38 1 0.4472 1.5416 -3.8850 39 1 5.0823 3.1060 -3.2245 40 1 3.6961 4.9616 -5.5196 41 1 4.7723 3.6393 -6.0578 42 1 1.0801 2.3938 -6.5830 43 1 0.9793 4.0446 -5.9057 44 1 4.1581 3.4128 1.5492 45 1 5.0445 2.5270 2.8333 46 1 5.9752 3.3612 0.0918 47 1 6.9250 3.1311 1.5847 48 1 8.8389 4.0078 -0.6369 49 1 5.8620 -0.0300 1.9587 50 1 5.3315 -0.3762 0.2842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714872946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:48 Heat of formation + Delta-G solvation = 37.802899 kcal Electronic energy + Delta-G solvation = -32249.951238 eV Core-core repulsion = 28245.481104 eV Total energy + Delta-G solvation = -4004.470134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06798 -41.10222 -38.79315 -37.48556 -37.11131 -34.55143 -33.13841 -32.56554 -32.35497 -30.81094 -29.14129 -28.90686 -26.90917 -26.66911 -25.91954 -23.53745 -22.80941 -22.45814 -22.20278 -21.70948 -19.79601 -18.77533 -18.16698 -17.81046 -17.58148 -17.19885 -16.66517 -16.56741 -16.18531 -15.87230 -15.70052 -15.56266 -15.22957 -14.82736 -14.54392 -14.26541 -14.02035 -13.95950 -13.75528 -13.58818 -13.54850 -13.43829 -13.29961 -12.98057 -12.85078 -12.79234 -12.66651 -12.44004 -12.15439 -11.99448 -11.97363 -11.93539 -11.70915 -11.69458 -11.49351 -11.43433 -11.06408 -10.59647 -10.23908 -9.94340 -9.53204 -9.30232 -8.33222 -7.66478 -4.87771 -0.14398 0.23016 1.38661 1.40849 1.49176 2.00676 2.14968 2.58014 2.75587 2.87923 3.16577 3.52126 3.57054 3.65059 3.80799 3.88204 3.96474 3.98467 4.16258 4.22218 4.26031 4.30712 4.35667 4.39192 4.41940 4.47547 4.54471 4.64772 4.69930 4.71055 4.76098 4.77214 4.87059 4.92648 4.98850 5.02849 5.07369 5.11435 5.19144 5.22040 5.27936 5.31676 5.35196 5.52252 5.57798 5.62175 5.76022 5.80435 5.90339 5.96891 6.37131 6.69193 7.29855 7.70010 7.99940 8.63907 9.46224 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.005138 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.616493 B = 5447.812862 C = 8036.575939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.074 3.926 4 N -0.600 5.600 5 C 0.498 3.502 6 O -0.471 6.471 7 C -0.129 4.129 8 C -0.111 4.111 9 C -0.091 4.091 10 C -0.120 4.120 11 C -0.155 4.155 12 C -0.067 4.067 13 C 0.092 3.908 14 O -0.377 6.377 15 C 0.090 3.910 16 C 0.146 3.854 17 H 0.134 0.866 18 C -0.146 4.146 19 C 0.200 3.800 20 N -0.575 5.575 21 C -0.167 4.167 22 H 0.059 0.941 23 C -0.075 4.075 24 N -0.957 5.957 25 Si 0.956 3.044 26 H -0.274 1.274 27 H -0.304 1.304 28 H -0.294 1.294 29 C 0.131 3.869 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.187 0.813 38 H 0.176 0.824 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.088 0.912 46 H -0.005 1.005 47 H -0.008 1.008 48 H 0.233 0.767 49 H 0.036 0.964 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.524 -3.167 -2.661 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.047 4.047 4 N -0.335 5.335 5 C 0.283 3.717 6 O -0.342 6.342 7 C -0.133 4.133 8 C -0.128 4.128 9 C -0.108 4.108 10 C -0.120 4.120 11 C -0.155 4.155 12 C -0.087 4.087 13 C 0.016 3.984 14 O -0.296 6.296 15 C 0.014 3.986 16 C 0.042 3.958 17 H 0.151 0.849 18 C -0.185 4.185 19 C 0.075 3.925 20 N -0.298 5.298 21 C -0.297 4.297 22 H 0.077 0.923 23 C -0.266 4.266 24 N -0.610 5.610 25 Si 0.788 3.212 26 H -0.199 1.199 27 H -0.232 1.232 28 H -0.221 1.221 29 C 0.005 3.995 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.203 0.797 38 H 0.193 0.807 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.013 0.987 47 H 0.011 0.989 48 H 0.043 0.957 49 H 0.054 0.946 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -24.626 -3.183 -3.007 25.013 hybrid contribution 2.001 0.321 -0.485 2.083 sum -22.626 -2.862 -3.492 23.072 Atomic orbital electron populations 1.21729 0.92795 1.02818 1.03150 1.22005 0.97814 0.95947 1.02578 1.22704 0.78077 0.98316 1.05585 1.47701 1.07018 1.72991 1.05817 1.19143 0.88290 0.79694 0.84530 1.91609 1.12929 1.46090 1.83554 1.20229 0.96126 1.01374 0.95561 1.22593 0.92000 0.99504 0.98737 1.20800 1.01847 0.96867 0.91287 1.21623 0.94191 0.97872 0.98323 1.21039 0.96882 1.01154 0.96416 1.20282 0.98604 0.97083 0.92703 1.21761 0.94264 0.98303 0.84085 1.89045 1.23985 1.87837 1.28758 1.22053 0.87768 1.01278 0.87495 1.22235 0.92715 0.95096 0.85772 0.84888 1.23240 0.97006 0.98105 1.00197 1.20667 0.91615 0.86767 0.93469 1.44275 1.25588 1.02535 1.57430 1.19022 0.97585 0.92007 1.21120 0.92273 1.25212 1.02136 0.95542 1.03720 1.70192 1.38976 0.99223 1.52646 0.85280 0.80489 0.77081 0.78379 1.19881 1.23230 1.22148 1.21876 0.89180 0.92556 0.95890 0.91344 0.91780 0.91420 0.92576 0.91102 0.88935 0.87343 0.79674 0.80679 0.89089 0.89122 0.89000 0.85843 0.88021 0.91099 0.89363 0.98702 0.98945 0.95740 0.94610 0.95754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.84 71.98 0.71 -0.61 16 2 C -0.14 -2.18 5.29 30.59 0.16 -2.02 16 3 C 0.07 1.43 4.85 86.38 0.42 1.85 16 4 N -0.60 -18.59 2.56 -793.50 -2.03 -20.62 16 5 C 0.50 20.16 6.78 86.79 0.59 20.75 16 6 O -0.47 -25.07 9.03 -3.87 -0.03 -25.10 16 7 C -0.13 -4.45 5.59 -20.07 -0.11 -4.56 16 8 C -0.11 -2.57 7.50 22.54 0.17 -2.40 16 9 C -0.09 -1.66 10.03 22.19 0.22 -1.44 16 10 C -0.12 -2.68 6.33 -19.62 -0.12 -2.80 16 11 C -0.15 -4.61 6.31 -19.74 -0.12 -4.73 16 12 C -0.07 -2.53 9.59 22.48 0.22 -2.31 16 13 C 0.09 2.41 7.63 71.37 0.54 2.96 16 14 O -0.38 -9.28 11.72 -148.98 -1.75 -11.02 16 15 C 0.09 1.56 7.63 71.38 0.54 2.10 16 16 C 0.15 4.72 3.75 46.39 0.17 4.89 16 17 H 0.13 3.01 8.05 -2.39 -0.02 3.00 16 18 C -0.15 -5.39 6.61 31.78 0.21 -5.18 16 19 C 0.20 10.64 4.35 86.73 0.38 11.01 16 20 N -0.57 -31.45 1.71 -691.97 -1.18 -32.63 16 21 C -0.17 -10.29 8.38 84.03 0.70 -9.59 16 22 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.08 -4.77 5.49 84.86 0.47 -4.30 16 24 N -0.96 -63.30 10.31 21.65 0.22 -63.08 16 25 Si 0.96 51.58 29.55 68.60 2.03 53.61 16 26 H -0.27 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.30 -16.63 7.11 99.48 0.71 -15.92 16 28 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 29 C 0.13 5.58 5.99 86.86 0.52 6.10 16 30 H 0.07 0.46 7.86 -2.39 -0.02 0.44 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.00 7.14 -2.38 -0.02 0.99 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.11 2.00 3.93 -2.81 -0.01 1.99 16 37 H 0.19 3.28 2.34 -2.91 -0.01 3.27 16 38 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.09 4.18 7.93 -2.91 -0.02 4.15 16 40 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 45 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 46 H -0.01 -0.33 6.69 -2.39 -0.02 -0.34 16 47 H -0.01 -0.46 7.50 -2.39 -0.02 -0.48 16 48 H 0.23 15.17 8.31 -92.70 -0.77 14.40 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.02 1.09 7.70 -2.39 -0.02 1.07 16 Total: -1.00 -86.03 381.01 3.86 -82.17 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.94 Total: 6.93 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.66 Total: 9.74 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -2.99 Total: -116.33 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.78 Total: -36.13 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.03 Total: 53.61 kcal Total: -86.03 3.86 -82.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714872946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.973 kcal (2) G-P(sol) polarization free energy of solvation -86.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds