Wall clock time and date at job start Wed Apr 1 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47355 * 2 1 4 4 N 1.46499 * 109.46934 * 299.99866 * 3 2 1 5 5 C 1.36942 * 119.99723 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 119.99398 * 9 7 5 12 12 H 1.48498 * 109.46811 * 239.99645 * 9 7 5 13 13 N 1.46501 * 109.47055 * 239.99835 * 2 1 3 14 14 C 1.34772 * 120.00331 * 183.81296 * 13 2 1 15 15 O 1.21562 * 119.99779 * 5.23009 * 14 13 2 16 16 C 1.47839 * 120.00404 * 185.23075 * 14 13 2 17 17 C 1.39601 * 120.22458 * 359.71825 * 16 14 13 18 18 C 1.37754 * 119.74302 * 179.87193 * 17 16 14 19 19 C 1.38799 * 120.50630 * 0.48136 * 18 17 16 20 20 C 1.38069 * 120.00891 * 359.55493 * 19 18 17 21 21 C 1.38341 * 120.02140 * 0.33561 * 20 19 18 22 22 C 1.50769 * 121.33863 * 180.64582 * 20 19 18 23 23 C 1.52961 * 109.78641 * 342.78819 * 22 20 19 24 24 O 1.43215 * 108.48265 * 49.21554 * 23 22 20 25 25 C 1.42701 * 113.13493 * 289.30132 * 24 23 22 26 26 C 1.52999 * 109.46825 * 120.00347 * 2 1 3 27 27 C 1.53000 * 117.52015 * 348.44939 * 26 2 1 28 28 C 1.53001 * 117.50481 * 57.08250 * 26 2 1 29 29 H 1.09005 * 109.47003 * 300.00382 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00008 * 1 2 3 31 31 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47445 * 59.99755 * 3 2 1 33 33 H 1.08998 * 109.46950 * 179.97438 * 3 2 1 34 34 H 0.96993 * 120.00326 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99755 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99543 * 3.80845 * 13 2 1 37 37 H 1.08002 * 120.12792 * 0.12779 * 17 16 14 38 38 H 1.08000 * 119.74368 * 180.25319 * 18 17 16 39 39 H 1.07999 * 119.91830 * 179.76558 * 21 20 19 40 40 H 1.08996 * 109.41969 * 102.88312 * 22 20 19 41 41 H 1.09001 * 109.41935 * 222.69515 * 22 20 19 42 42 H 1.08995 * 109.63590 * 289.52226 * 23 22 20 43 43 H 1.08996 * 109.80266 * 169.01084 * 23 22 20 44 44 H 1.09001 * 109.34329 * 291.71279 * 25 24 23 45 45 H 1.08994 * 109.20894 * 172.10856 * 25 24 23 46 46 H 1.09008 * 115.54661 * 202.75511 * 26 2 1 47 47 H 1.08997 * 117.49827 * 214.97703 * 27 26 2 48 48 H 1.09001 * 117.49731 * 359.97438 * 27 26 2 49 49 H 1.09003 * 117.49632 * 359.97438 * 28 26 2 50 50 H 1.08996 * 117.49891 * 144.99565 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1330 -1.1962 5 6 1.8831 3.4439 -1.4131 6 1 2.5040 3.9687 -0.7023 7 6 1.4200 4.0984 -2.5463 8 7 0.6629 3.4589 -3.4125 9 14 1.8725 5.8864 -2.8427 10 1 2.7270 6.3718 -1.7295 11 1 2.6142 6.0035 -4.1238 12 1 0.6356 6.7054 -2.9100 13 7 2.0184 -0.6907 -1.1962 14 6 3.3409 -0.8815 -1.3715 15 8 4.1219 -0.5665 -0.4947 16 6 3.8420 -1.4738 -2.6299 17 6 2.9489 -1.8427 -3.6375 18 6 3.4269 -2.3913 -4.8072 19 6 4.7887 -2.5893 -4.9876 20 6 5.6768 -2.2272 -3.9943 21 6 5.2091 -1.6733 -2.8160 22 6 7.1629 -2.4156 -4.1643 23 6 7.4332 -3.3968 -5.3062 24 8 6.6632 -2.9925 -6.4441 25 6 5.2623 -3.2074 -6.2781 26 6 2.0400 -0.7213 1.2492 27 6 1.0222 -1.0409 2.3460 28 6 1.5801 -2.1639 1.4693 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6768 1.9563 0.8899 33 1 3.1300 1.4423 0.0005 34 1 0.9944 1.6615 -1.8349 35 1 0.3395 3.9162 -4.2045 36 1 1.3897 -1.0107 -1.8620 37 1 1.8877 -1.6946 -3.5021 38 1 2.7362 -2.6728 -5.5883 39 1 5.9049 -1.3941 -2.0387 40 1 7.6259 -1.4559 -4.3940 41 1 7.5864 -2.8093 -3.2404 42 1 7.1389 -4.4015 -5.0031 43 1 8.4934 -3.3862 -5.5589 44 1 5.0609 -4.2785 -6.2605 45 1 4.7285 -2.7533 -7.1129 46 1 3.0517 -0.4624 1.5615 47 1 1.3643 -0.9922 3.3797 48 1 -0.0110 -0.7369 2.1779 49 1 0.9139 -2.5990 0.7243 50 1 2.2893 -2.8540 1.9263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715120667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:12 Heat of formation + Delta-G solvation = -14.939303 kcal Electronic energy + Delta-G solvation = -30827.492443 eV Core-core repulsion = 26820.735236 eV Total energy + Delta-G solvation = -4006.757207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62301 -39.82949 -38.02558 -36.94372 -34.95789 -33.62488 -33.10108 -32.06877 -30.96313 -29.58289 -29.25024 -26.40632 -25.89582 -24.09940 -23.83516 -22.73916 -22.17892 -21.63621 -21.31427 -19.75133 -18.64928 -17.68648 -17.22958 -16.83503 -16.38631 -15.87962 -15.81286 -15.29759 -14.86049 -14.68502 -14.51466 -14.38472 -14.09946 -13.85338 -13.62977 -13.38953 -13.16577 -13.08392 -12.81976 -12.45050 -12.38270 -12.27181 -12.07888 -11.87421 -11.53618 -11.26661 -11.18832 -11.05686 -10.89353 -10.86713 -10.80609 -10.61156 -10.26673 -10.10179 -9.95574 -9.86934 -9.63562 -9.31540 -8.84486 -8.80603 -8.72070 -8.50907 -6.84207 -5.73093 -2.99226 0.87021 1.31896 3.04222 3.37556 3.46196 3.52395 3.54314 3.62040 3.94492 4.14884 4.46118 4.46733 4.60620 4.66206 4.78583 4.85846 4.94303 5.02698 5.09671 5.11160 5.15550 5.19191 5.28763 5.35319 5.37800 5.46491 5.48282 5.61448 5.63675 5.66262 5.69768 5.77219 5.86881 5.93293 5.95449 6.02576 6.21600 6.22850 6.26285 6.29969 6.34948 6.40170 6.54154 6.56644 6.63045 6.81224 6.85763 6.91560 7.10116 7.76278 7.91499 8.46608 8.62706 9.58246 10.15600 10.51420 11.50251 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008086 B = 0.003795 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.922581 B = 7376.790883 C = 9744.304425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.201 3.799 3 C 0.146 3.854 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.704 5.704 14 C 0.568 3.432 15 O -0.533 6.533 16 C -0.118 4.118 17 C -0.082 4.082 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.058 4.058 22 C -0.114 4.114 23 C 0.059 3.941 24 O -0.375 6.375 25 C 0.101 3.899 26 C -0.141 4.141 27 C -0.183 4.183 28 C -0.175 4.175 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.395 0.605 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -19.440 0.058 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.116 3.884 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.355 5.355 14 C 0.355 3.645 15 O -0.411 6.411 16 C -0.121 4.121 17 C -0.101 4.101 18 C -0.136 4.136 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.077 4.077 22 C -0.151 4.151 23 C -0.017 4.017 24 O -0.294 6.294 25 C 0.024 3.976 26 C -0.161 4.161 27 C -0.220 4.220 28 C -0.212 4.212 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.230 0.770 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.246 -18.930 0.558 19.942 hybrid contribution -0.505 0.790 -0.534 1.079 sum 5.741 -18.140 0.024 19.027 Atomic orbital electron populations 1.22137 0.93533 1.01316 1.04275 1.20036 0.93477 0.92349 0.82556 1.20999 0.97870 0.88186 0.91124 1.42260 1.61274 1.10501 1.23042 1.19281 1.24985 0.87591 1.04332 0.91296 1.24668 1.00736 0.98177 0.97447 1.69652 1.39790 1.35942 1.13139 0.86144 0.77484 0.85184 0.77614 1.20608 1.21984 1.21964 1.45861 1.06755 1.59083 1.23767 1.17996 0.82476 0.77908 0.86097 1.90700 1.55896 1.51147 1.43338 1.20030 0.94365 1.02312 0.95397 1.21261 0.99548 0.96391 0.92918 1.20870 0.94408 1.00485 0.97835 1.20382 0.93934 0.99737 0.96426 1.19388 0.95260 1.00226 0.93650 1.21157 0.94632 0.95307 0.96629 1.21118 0.92404 1.01663 0.99961 1.22634 0.96509 0.96553 0.86049 1.88080 1.17093 1.85488 1.38698 1.21481 0.82119 0.99150 0.94816 1.22594 0.99834 0.97188 0.96442 1.23141 0.99500 1.03504 0.95886 1.22788 1.03669 0.91684 1.03063 0.90589 0.90615 0.92843 0.95603 0.94429 0.78455 0.93764 0.76994 0.85339 0.85325 0.84668 0.89420 0.89529 0.92653 0.88256 0.91580 0.87478 0.86645 0.89208 0.88195 0.89277 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.04 37.16 0.26 -2.02 16 2 C 0.20 3.34 0.54 -131.82 -0.07 3.27 16 3 C 0.15 3.15 5.02 -4.05 -0.02 3.13 16 4 N -0.73 -18.42 5.17 -59.91 -0.31 -18.73 16 5 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -28.13 13.06 55.49 0.72 -27.41 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.95 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.70 -11.30 4.66 -48.54 -0.23 -11.52 16 14 C 0.57 10.05 7.18 -12.33 -0.09 9.96 16 15 O -0.53 -10.80 13.16 5.31 0.07 -10.73 16 16 C -0.12 -1.84 5.87 -105.03 -0.62 -2.46 16 17 C -0.08 -1.10 9.54 -39.25 -0.37 -1.48 16 18 C -0.12 -1.38 9.65 -39.55 -0.38 -1.76 16 19 C -0.10 -1.24 5.82 -104.47 -0.61 -1.85 16 20 C -0.09 -1.08 5.77 -104.61 -0.60 -1.69 16 21 C -0.06 -0.86 9.22 -39.11 -0.36 -1.22 16 22 C -0.11 -1.14 6.00 -27.87 -0.17 -1.31 16 23 C 0.06 0.51 6.85 37.14 0.25 0.77 16 24 O -0.38 -4.16 10.80 -35.23 -0.38 -4.54 16 25 C 0.10 0.98 6.65 36.01 0.24 1.22 16 26 C -0.14 -2.13 4.05 -90.62 -0.37 -2.50 16 27 C -0.18 -2.25 9.61 -26.73 -0.26 -2.51 16 28 C -0.17 -2.19 9.81 -26.73 -0.26 -2.45 16 29 H 0.08 1.09 6.84 -51.93 -0.36 0.73 16 30 H 0.07 1.27 6.86 -51.92 -0.36 0.92 16 31 H 0.05 0.64 7.01 -51.93 -0.36 0.28 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.91 6.63 -51.93 -0.34 0.56 16 34 H 0.38 9.84 6.35 -40.82 -0.26 9.58 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.40 5.51 6.54 -40.82 -0.27 5.24 16 37 H 0.13 1.50 6.43 -52.49 -0.34 1.16 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 1.99 7.64 -52.49 -0.40 1.59 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.12 1.99 7.18 -51.92 -0.37 1.62 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.16 5.87 -51.93 -0.30 0.85 16 49 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -34.04 394.02 -10.39 -44.43 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -7.52 Total: 14.78 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.67 Total: -10.17 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.19 Total: -57.67 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.31 Total: -15.28 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.04 -10.39 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715120667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.494 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds