Wall clock time and date at job start Wed Apr 1 2020 04:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47355 * 2 1 4 4 N 1.46499 * 109.46934 * 299.99866 * 3 2 1 5 5 C 1.36942 * 119.99723 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 119.99398 * 9 7 5 12 12 H 1.48498 * 109.46811 * 239.99645 * 9 7 5 13 13 N 1.46501 * 109.47055 * 239.99835 * 2 1 3 14 14 C 1.34772 * 120.00331 * 183.81296 * 13 2 1 15 15 O 1.21562 * 119.99779 * 5.23009 * 14 13 2 16 16 C 1.47839 * 120.00404 * 185.23075 * 14 13 2 17 17 C 1.39601 * 120.22458 * 359.71825 * 16 14 13 18 18 C 1.37754 * 119.74302 * 179.87193 * 17 16 14 19 19 C 1.38799 * 120.50630 * 0.48136 * 18 17 16 20 20 C 1.38069 * 120.00891 * 359.55493 * 19 18 17 21 21 C 1.38341 * 120.02140 * 0.33561 * 20 19 18 22 22 C 1.50769 * 121.33863 * 180.64582 * 20 19 18 23 23 C 1.52961 * 109.78641 * 342.78819 * 22 20 19 24 24 O 1.43215 * 108.48265 * 49.21554 * 23 22 20 25 25 C 1.42701 * 113.13493 * 289.30132 * 24 23 22 26 26 C 1.52999 * 109.46825 * 120.00347 * 2 1 3 27 27 C 1.53000 * 117.52015 * 348.44939 * 26 2 1 28 28 C 1.53001 * 117.50481 * 57.08250 * 26 2 1 29 29 H 1.09005 * 109.47003 * 300.00382 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00008 * 1 2 3 31 31 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47445 * 59.99755 * 3 2 1 33 33 H 1.08998 * 109.46950 * 179.97438 * 3 2 1 34 34 H 0.96993 * 120.00326 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99755 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99543 * 3.80845 * 13 2 1 37 37 H 1.08002 * 120.12792 * 0.12779 * 17 16 14 38 38 H 1.08000 * 119.74368 * 180.25319 * 18 17 16 39 39 H 1.07999 * 119.91830 * 179.76558 * 21 20 19 40 40 H 1.08996 * 109.41969 * 102.88312 * 22 20 19 41 41 H 1.09001 * 109.41935 * 222.69515 * 22 20 19 42 42 H 1.08995 * 109.63590 * 289.52226 * 23 22 20 43 43 H 1.08996 * 109.80266 * 169.01084 * 23 22 20 44 44 H 1.09001 * 109.34329 * 291.71279 * 25 24 23 45 45 H 1.08994 * 109.20894 * 172.10856 * 25 24 23 46 46 H 1.09008 * 115.54661 * 202.75511 * 26 2 1 47 47 H 1.08997 * 117.49827 * 214.97703 * 27 26 2 48 48 H 1.09001 * 117.49731 * 359.97438 * 27 26 2 49 49 H 1.09003 * 117.49632 * 359.97438 * 28 26 2 50 50 H 1.08996 * 117.49891 * 144.99565 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1330 -1.1962 5 6 1.8831 3.4439 -1.4131 6 1 2.5040 3.9687 -0.7023 7 6 1.4200 4.0984 -2.5463 8 7 0.6629 3.4589 -3.4125 9 14 1.8725 5.8864 -2.8427 10 1 2.7270 6.3718 -1.7295 11 1 2.6142 6.0035 -4.1238 12 1 0.6356 6.7054 -2.9100 13 7 2.0184 -0.6907 -1.1962 14 6 3.3409 -0.8815 -1.3715 15 8 4.1219 -0.5665 -0.4947 16 6 3.8420 -1.4738 -2.6299 17 6 2.9489 -1.8427 -3.6375 18 6 3.4269 -2.3913 -4.8072 19 6 4.7887 -2.5893 -4.9876 20 6 5.6768 -2.2272 -3.9943 21 6 5.2091 -1.6733 -2.8160 22 6 7.1629 -2.4156 -4.1643 23 6 7.4332 -3.3968 -5.3062 24 8 6.6632 -2.9925 -6.4441 25 6 5.2623 -3.2074 -6.2781 26 6 2.0400 -0.7213 1.2492 27 6 1.0222 -1.0409 2.3460 28 6 1.5801 -2.1639 1.4693 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6768 1.9563 0.8899 33 1 3.1300 1.4423 0.0005 34 1 0.9944 1.6615 -1.8349 35 1 0.3395 3.9162 -4.2045 36 1 1.3897 -1.0107 -1.8620 37 1 1.8877 -1.6946 -3.5021 38 1 2.7362 -2.6728 -5.5883 39 1 5.9049 -1.3941 -2.0387 40 1 7.6259 -1.4559 -4.3940 41 1 7.5864 -2.8093 -3.2404 42 1 7.1389 -4.4015 -5.0031 43 1 8.4934 -3.3862 -5.5589 44 1 5.0609 -4.2785 -6.2605 45 1 4.7285 -2.7533 -7.1129 46 1 3.0517 -0.4624 1.5615 47 1 1.3643 -0.9922 3.3797 48 1 -0.0110 -0.7369 2.1779 49 1 0.9139 -2.5990 0.7243 50 1 2.2893 -2.8540 1.9263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715120667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:11 Heat of formation + Delta-G solvation = -36.516381 kcal Electronic energy + Delta-G solvation = -30828.428096 eV Core-core repulsion = 26820.735236 eV Total energy + Delta-G solvation = -4007.692860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74786 -40.92273 -39.11859 -38.03291 -36.61709 -35.15955 -34.10295 -33.38686 -32.55676 -30.84212 -30.39885 -27.82900 -27.08276 -25.62958 -24.93230 -23.89309 -23.19594 -22.90642 -22.62284 -20.84552 -20.02874 -19.28204 -18.75438 -17.71180 -17.42222 -16.98616 -16.83655 -16.64795 -16.33160 -15.88221 -15.83654 -15.65074 -15.42830 -15.07387 -14.93991 -14.69211 -14.46402 -14.29670 -14.08555 -13.65105 -13.58499 -13.29436 -13.27222 -13.21882 -12.99156 -12.84269 -12.51106 -12.43232 -12.16923 -12.13348 -12.05428 -11.99110 -11.75734 -11.68684 -11.39704 -11.06295 -10.99423 -10.78376 -10.54383 -10.03009 -9.82753 -9.62482 -8.98098 -7.97343 -5.23600 -0.20719 0.30887 1.42965 1.43962 1.53668 1.84540 2.14295 2.53081 2.78994 2.93092 3.06026 3.35820 3.49578 3.60096 3.62017 3.81844 3.82889 3.92865 4.02782 4.06144 4.16066 4.19766 4.23560 4.27546 4.33191 4.40139 4.44992 4.52225 4.53972 4.71517 4.76208 4.81393 4.83021 4.87282 4.89988 4.92223 4.97238 5.00511 5.05959 5.12347 5.25234 5.28436 5.29257 5.31757 5.41548 5.44525 5.45848 5.64114 5.85628 6.12465 6.25601 6.62728 7.30503 7.33356 8.06056 8.35761 9.25668 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008086 B = 0.003795 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.922581 B = 7376.790883 C = 9744.304425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.210 3.790 3 C 0.149 3.851 4 N -0.729 5.729 5 C -0.246 4.246 6 H 0.062 0.938 7 C -0.065 4.065 8 N -0.960 5.960 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.560 3.440 15 O -0.571 6.571 16 C -0.146 4.146 17 C -0.089 4.089 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.077 4.077 22 C -0.116 4.116 23 C 0.059 3.941 24 O -0.395 6.395 25 C 0.099 3.901 26 C -0.167 4.167 27 C -0.164 4.164 28 C -0.158 4.158 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.005 0.995 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.405 0.595 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 -21.195 -0.917 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.124 3.876 3 C 0.022 3.978 4 N -0.372 5.372 5 C -0.378 4.378 6 H 0.080 0.920 7 C -0.258 4.258 8 N -0.611 5.611 9 Si 0.795 3.205 10 H -0.199 1.199 11 H -0.221 1.221 12 H -0.213 1.213 13 N -0.348 5.348 14 C 0.349 3.651 15 O -0.451 6.451 16 C -0.149 4.149 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.096 4.096 22 C -0.153 4.153 23 C -0.017 4.017 24 O -0.313 6.313 25 C 0.023 3.977 26 C -0.187 4.187 27 C -0.202 4.202 28 C -0.195 4.195 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.023 0.977 34 H 0.212 0.788 35 H 0.061 0.939 36 H 0.242 0.758 37 H 0.160 0.840 38 H 0.180 0.820 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.103 0.897 47 H 0.120 0.880 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.378 -20.703 -0.406 21.394 hybrid contribution -0.165 1.317 -0.225 1.347 sum 5.213 -19.386 -0.631 20.084 Atomic orbital electron populations 1.22080 0.91521 1.03308 1.03474 1.19861 0.94698 0.89395 0.83666 1.21011 0.95873 0.91476 0.89470 1.42308 1.61084 1.09768 1.24059 1.19555 1.24790 0.89087 1.04403 0.92033 1.25387 1.01066 1.02000 0.97329 1.69773 1.40610 1.37286 1.13396 0.85186 0.77291 0.80701 0.77281 1.19919 1.22095 1.21324 1.45817 1.06589 1.58430 1.23942 1.18459 0.82664 0.77460 0.86525 1.90671 1.56811 1.52885 1.44759 1.20032 0.95240 1.04284 0.95383 1.21471 0.99928 0.96395 0.92982 1.21264 0.95055 0.99186 0.97790 1.20813 0.93998 0.98581 0.97049 1.19708 0.97016 0.99652 0.93033 1.21195 0.94325 0.96572 0.97486 1.21198 0.90631 1.01964 1.01476 1.22793 0.97492 0.96577 0.84819 1.88059 1.17790 1.85858 1.39609 1.21684 0.81727 1.00579 0.93706 1.22312 0.99363 0.99827 0.97183 1.23262 0.99200 1.01989 0.95706 1.22863 1.03322 0.90380 1.02974 0.89952 0.92798 0.89367 0.95867 0.97727 0.78784 0.93929 0.75775 0.84004 0.81986 0.86135 0.90215 0.88223 0.91140 0.86234 0.88948 0.86125 0.89726 0.88025 0.86815 0.87900 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 7.04 71.98 0.51 -3.63 16 2 C 0.21 7.07 0.54 3.60 0.00 7.07 16 3 C 0.15 6.72 5.02 86.38 0.43 7.15 16 4 N -0.73 -38.14 5.17 -343.47 -1.78 -39.91 16 5 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 6 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 7 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 8 N -0.96 -58.16 13.06 21.65 0.28 -57.88 16 9 Si 0.97 47.64 29.55 68.60 2.03 49.66 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 N -0.70 -22.88 4.66 -425.77 -1.98 -24.86 16 14 C 0.56 20.89 7.18 86.79 0.62 21.51 16 15 O -0.57 -24.93 13.16 -3.91 -0.05 -24.99 16 16 C -0.15 -4.75 5.87 -20.13 -0.12 -4.87 16 17 C -0.09 -2.34 9.54 22.48 0.21 -2.12 16 18 C -0.12 -2.48 9.65 22.29 0.22 -2.27 16 19 C -0.10 -2.30 5.82 -19.76 -0.11 -2.41 16 20 C -0.09 -2.38 5.77 -19.86 -0.11 -2.49 16 21 C -0.08 -2.38 9.22 22.58 0.21 -2.17 16 22 C -0.12 -2.24 6.00 29.86 0.18 -2.06 16 23 C 0.06 0.91 6.85 71.97 0.49 1.40 16 24 O -0.39 -7.84 10.80 -148.98 -1.61 -9.45 16 25 C 0.10 1.64 6.65 71.24 0.47 2.11 16 26 C -0.17 -5.08 4.05 -10.79 -0.04 -5.12 16 27 C -0.16 -3.72 9.61 30.60 0.29 -3.43 16 28 C -0.16 -3.68 9.81 30.60 0.30 -3.38 16 29 H 0.08 2.22 6.84 -2.38 -0.02 2.21 16 30 H 0.05 1.78 6.86 -2.38 -0.02 1.76 16 31 H 0.09 1.88 7.01 -2.39 -0.02 1.86 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.00 0.25 6.63 -2.39 -0.02 0.23 16 34 H 0.38 20.03 6.35 -92.71 -0.59 19.44 16 35 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 36 H 0.41 11.27 6.54 -92.71 -0.61 10.66 16 37 H 0.14 3.18 6.43 -2.91 -0.02 3.16 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.12 3.93 7.64 -2.91 -0.02 3.91 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 43 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 3.11 7.18 -2.38 -0.02 3.10 16 47 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 2.29 5.87 -2.39 -0.01 2.27 16 49 H 0.10 2.12 7.42 -2.39 -0.02 2.11 16 50 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -76.07 394.02 1.53 -74.54 By element: Atomic # 1 Polarization: 44.79 SS G_CDS: -0.22 Total: 44.56 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.86 Total: -11.68 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -3.48 Total: -122.65 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.66 Total: -34.44 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -76.07 1.53 -74.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715120667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds