Wall clock time and date at job start Wed Apr 1 2020 03:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 N 1.46900 * 109.47104 * 174.76861 * 3 2 1 5 5 C 1.46899 * 110.99830 * 67.83355 * 4 3 2 6 6 C 1.53002 * 109.47227 * 58.22269 * 5 4 3 7 7 O 1.42901 * 109.47121 * 66.50225 * 6 5 4 8 8 C 1.42889 * 114.00026 * 184.46000 * 7 6 5 9 9 C 1.46899 * 110.99879 * 191.78472 * 4 3 2 10 10 C 1.53072 * 109.44124 * 67.80195 * 9 4 3 11 11 C 1.53197 * 109.29652 * 181.23549 * 10 9 4 12 12 N 1.46928 * 108.89337 * 305.58160 * 11 10 9 13 13 C 1.34777 * 120.62945 * 233.55894 * 12 11 10 14 14 O 1.21285 * 119.99827 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99758 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46728 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99889 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99693 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99896 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99663 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47145 * 89.99430 * 21 19 17 23 23 H 1.48497 * 109.47211 * 209.99755 * 21 19 17 24 24 H 1.48509 * 109.46700 * 329.99759 * 21 19 17 25 25 C 1.46926 * 118.73841 * 53.53118 * 12 11 10 26 26 C 1.53043 * 109.46200 * 188.00674 * 9 4 3 27 27 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46888 * 299.99465 * 1 2 3 29 29 H 1.08994 * 109.47105 * 59.99914 * 1 2 3 30 30 H 1.08998 * 109.47203 * 240.00099 * 2 1 3 31 31 H 1.09003 * 109.47290 * 120.00281 * 2 1 3 32 32 H 1.08997 * 109.46717 * 54.77225 * 3 2 1 33 33 H 1.08997 * 109.46924 * 294.77174 * 3 2 1 34 34 H 1.08996 * 109.47125 * 178.22546 * 5 4 3 35 35 H 1.09003 * 109.46751 * 298.22440 * 5 4 3 36 36 H 1.09003 * 109.46939 * 186.49804 * 6 5 4 37 37 H 1.08997 * 109.46903 * 306.49973 * 6 5 4 38 38 H 1.08999 * 109.47515 * 60.00015 * 8 7 6 39 39 H 1.09003 * 109.47349 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.47431 * 299.99484 * 8 7 6 41 41 H 1.09001 * 109.46150 * 307.97790 * 9 4 3 42 42 H 1.09000 * 109.39314 * 61.36271 * 10 9 4 43 43 H 1.08999 * 109.62182 * 301.25088 * 10 9 4 44 44 H 1.08995 * 109.58692 * 185.71805 * 11 10 9 45 45 H 1.09000 * 109.58532 * 65.43452 * 11 10 9 46 46 H 1.08992 * 109.47574 * 300.00049 * 15 13 12 47 47 H 1.09001 * 109.46650 * 60.00338 * 15 13 12 48 48 H 0.97006 * 119.99852 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.58708 * 66.18252 * 25 12 11 50 50 H 1.09004 * 109.58293 * 186.46255 * 25 12 11 51 51 H 1.09002 * 109.49542 * 58.67685 * 26 9 4 52 52 H 1.09001 * 109.52190 * 298.59713 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4445 0.1263 5 6 4.1365 0.8893 -1.0775 6 6 3.7125 1.7064 -2.2996 7 8 4.2514 3.0262 -2.2006 8 6 3.8312 3.9055 -3.2455 9 6 4.0057 2.7956 0.4097 10 6 3.5566 3.2229 1.8092 11 6 4.0558 4.6439 2.0892 12 7 5.5093 4.6876 1.8793 13 6 6.3287 5.1522 2.8433 14 8 5.8678 5.5397 3.8961 15 6 7.8175 5.1901 2.6130 16 16 8.6381 5.8604 4.0805 17 6 10.3169 5.7936 3.5497 18 1 10.5579 5.4155 2.5672 19 6 11.3295 6.2278 4.3939 20 7 12.5837 6.1774 3.9975 21 14 10.9126 6.8824 6.0930 22 1 10.9174 5.7636 7.0694 23 1 11.9220 7.8947 6.4949 24 1 9.5666 7.5094 6.0653 25 6 6.0527 4.2146 0.5988 26 6 5.5344 2.7971 0.3366 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6022 1.9826 0.8395 33 1 1.7551 1.9286 -0.9331 34 1 5.2204 0.9316 -0.9705 35 1 3.8243 -0.1469 -1.2071 36 1 4.0873 1.2279 -3.2045 37 1 2.6246 1.7603 -2.3410 38 1 2.7454 3.9993 -3.2268 39 1 4.2828 4.8866 -3.0985 40 1 4.1444 3.5017 -4.2083 41 1 3.6063 3.4932 -0.3264 42 1 3.9740 2.5386 2.5479 43 1 2.4684 3.2016 1.8669 44 1 3.8271 4.9151 3.1198 45 1 3.5675 5.3431 1.4104 46 1 8.1815 4.1806 2.4220 47 1 8.0361 5.8238 1.7536 48 1 13.2914 6.4805 4.5876 49 1 5.7270 4.8769 -0.2033 50 1 7.1417 4.2050 0.6452 51 1 5.8516 2.4712 -0.6540 52 1 5.9357 2.1181 1.0889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716716702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:07 Heat of formation + Delta-G solvation = -73.683113 kcal Electronic energy + Delta-G solvation = -29381.206698 eV Core-core repulsion = 25507.346120 eV Total energy + Delta-G solvation = -3873.860579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41863 -39.21566 -37.47458 -36.27867 -33.75963 -32.40238 -32.27006 -31.03957 -29.75144 -28.59391 -26.72145 -26.15469 -25.57341 -24.24661 -23.34313 -22.41717 -21.06466 -20.00720 -18.98605 -17.65607 -17.33056 -16.90338 -16.68115 -15.83481 -15.51818 -15.40241 -15.32046 -15.19048 -14.90908 -14.66895 -14.31230 -13.82389 -13.75741 -13.62853 -13.27502 -13.05149 -12.83374 -12.72742 -12.68520 -12.54075 -12.31601 -12.08499 -11.99681 -11.89997 -11.62287 -11.50325 -11.28955 -11.23091 -11.16693 -10.97164 -10.81039 -10.70551 -10.52113 -10.38915 -9.89543 -9.81482 -9.35654 -8.96371 -8.50241 -8.43258 -8.41963 -6.86734 -6.25076 -3.96058 2.79654 3.03075 3.27914 3.33297 3.36864 3.54343 3.62498 3.67546 4.36998 4.45277 4.55910 4.65049 4.66655 4.70604 4.80618 4.84415 4.89266 4.95882 4.98573 5.01581 5.04475 5.09494 5.14055 5.18208 5.24212 5.28973 5.29496 5.35786 5.37192 5.43146 5.50639 5.55525 5.64696 5.72172 5.73648 5.79226 5.81928 5.83720 5.87262 5.95780 6.03009 6.07322 6.09922 6.31966 6.68366 6.72264 6.86615 6.92636 7.59617 7.98096 8.45593 8.54900 9.21397 10.84140 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.002376 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.683312 B =11781.633568 C =12430.896246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.046 3.954 4 N -0.529 5.529 5 C 0.047 3.953 6 C 0.018 3.982 7 O -0.377 6.377 8 C 0.028 3.972 9 C 0.090 3.910 10 C -0.127 4.127 11 C 0.117 3.883 12 N -0.616 5.616 13 C 0.534 3.466 14 O -0.523 6.523 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.519 4.519 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.113 3.887 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.245 -11.543 -16.643 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.082 4.082 4 N -0.252 5.252 5 C -0.081 4.081 6 C -0.060 4.060 7 O -0.296 6.296 8 C -0.068 4.068 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.007 4.007 12 N -0.352 5.352 13 C 0.321 3.679 14 O -0.398 6.398 15 C -0.271 4.271 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.011 4.011 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.103 0.897 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.479 -11.173 -14.484 30.559 hybrid contribution 0.234 0.199 -1.698 1.726 sum -24.244 -10.974 -16.182 31.146 Atomic orbital electron populations 1.21738 0.95767 1.01712 1.01709 1.21527 0.95262 0.96520 1.02544 1.22280 0.88013 0.97182 1.00677 1.62216 1.05055 1.23053 1.34830 1.22457 1.01580 0.97564 0.86468 1.23367 0.98218 0.84419 1.00000 1.88054 1.71734 1.21372 1.48407 1.22742 0.98909 0.94625 0.90575 1.21681 0.95192 0.88781 0.96104 1.22033 1.00433 0.96731 0.97388 1.21464 0.80176 0.95986 1.03024 1.48088 1.06521 1.64638 1.15998 1.20274 0.88318 0.76265 0.82994 1.90676 1.77041 1.46597 1.25467 1.23300 0.93528 1.05338 1.04888 1.84782 1.04489 1.82958 1.19576 1.22316 0.88910 1.49523 1.05915 0.89415 1.24712 0.94043 0.94121 0.98485 1.69943 0.99027 1.45653 1.37170 0.86730 0.80744 0.80142 0.84219 1.19228 1.20010 1.15910 1.21694 0.99617 0.94794 0.84974 1.22038 0.94697 0.96804 1.02730 0.92596 0.92580 0.93088 0.92370 0.90945 0.90516 0.94673 0.88941 0.89281 0.93111 0.92969 0.94483 0.89480 0.94202 0.91748 0.90809 0.91291 0.88929 0.92195 0.88578 0.88622 0.92000 0.91479 0.89300 0.89674 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.75 5.77 -26.73 -0.15 -0.91 16 3 C 0.05 0.33 4.59 -3.82 -0.02 0.31 16 4 N -0.53 -4.44 4.56 -226.58 -1.03 -5.47 16 5 C 0.05 0.34 5.30 -3.82 -0.02 0.32 16 6 C 0.02 0.12 5.76 37.16 0.21 0.33 16 7 O -0.38 -2.98 6.19 -35.23 -0.22 -3.19 16 8 C 0.03 0.17 11.01 101.05 1.11 1.28 16 9 C 0.09 0.85 1.20 -67.65 -0.08 0.77 16 10 C -0.13 -1.33 5.38 -26.59 -0.14 -1.47 16 11 C 0.12 1.45 6.43 -3.71 -0.02 1.43 16 12 N -0.62 -8.91 2.97 -172.77 -0.51 -9.42 16 13 C 0.53 10.13 7.72 -10.98 -0.08 10.05 16 14 O -0.52 -11.78 15.28 5.55 0.08 -11.69 16 15 C -0.12 -2.43 4.50 36.01 0.16 -2.27 16 16 S -0.14 -3.76 18.55 -107.50 -1.99 -5.75 16 17 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.84 13.97 55.49 0.78 -26.06 16 21 Si 0.86 22.12 27.74 -169.99 -4.71 17.41 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 25 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 26 C -0.12 -1.28 4.33 -26.61 -0.12 -1.40 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.34 6.89 -51.93 -0.36 -0.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.59 6.11 -51.93 -0.32 0.27 16 33 H 0.04 0.25 5.74 -51.93 -0.30 -0.05 16 34 H 0.09 0.72 5.79 -51.93 -0.30 0.42 16 35 H 0.09 0.54 6.73 -51.93 -0.35 0.19 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.33 5.87 -51.93 -0.31 0.03 16 38 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.64 6.05 -51.93 -0.31 0.33 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.62 6.36 -51.93 -0.33 0.29 16 44 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 1.83 7.69 -51.92 -0.40 1.43 16 47 H 0.10 1.81 7.94 -51.91 -0.41 1.40 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.07 5.93 -51.93 -0.31 0.77 16 51 H 0.08 0.81 5.01 -51.93 -0.26 0.55 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -33.68 401.16 -9.13 -42.81 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.97 Total: -1.83 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 1.41 Total: -2.83 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.77 Total: -40.96 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.13 Total: -14.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.68 -9.13 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.873 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds