Wall clock time and date at job start Wed Apr 1 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 N 1.46900 * 109.47104 * 174.76861 * 3 2 1 5 5 C 1.46899 * 110.99830 * 67.83355 * 4 3 2 6 6 C 1.53002 * 109.47227 * 58.22269 * 5 4 3 7 7 O 1.42901 * 109.47121 * 66.50225 * 6 5 4 8 8 C 1.42889 * 114.00026 * 184.46000 * 7 6 5 9 9 C 1.46899 * 110.99879 * 191.78472 * 4 3 2 10 10 C 1.53072 * 109.44124 * 67.80195 * 9 4 3 11 11 C 1.53197 * 109.29652 * 181.23549 * 10 9 4 12 12 N 1.46928 * 108.89337 * 305.58160 * 11 10 9 13 13 C 1.34777 * 120.62945 * 233.55894 * 12 11 10 14 14 O 1.21285 * 119.99827 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99758 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46728 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99889 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99693 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99896 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99663 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47145 * 89.99430 * 21 19 17 23 23 H 1.48497 * 109.47211 * 209.99755 * 21 19 17 24 24 H 1.48509 * 109.46700 * 329.99759 * 21 19 17 25 25 C 1.46926 * 118.73841 * 53.53118 * 12 11 10 26 26 C 1.53043 * 109.46200 * 188.00674 * 9 4 3 27 27 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46888 * 299.99465 * 1 2 3 29 29 H 1.08994 * 109.47105 * 59.99914 * 1 2 3 30 30 H 1.08998 * 109.47203 * 240.00099 * 2 1 3 31 31 H 1.09003 * 109.47290 * 120.00281 * 2 1 3 32 32 H 1.08997 * 109.46717 * 54.77225 * 3 2 1 33 33 H 1.08997 * 109.46924 * 294.77174 * 3 2 1 34 34 H 1.08996 * 109.47125 * 178.22546 * 5 4 3 35 35 H 1.09003 * 109.46751 * 298.22440 * 5 4 3 36 36 H 1.09003 * 109.46939 * 186.49804 * 6 5 4 37 37 H 1.08997 * 109.46903 * 306.49973 * 6 5 4 38 38 H 1.08999 * 109.47515 * 60.00015 * 8 7 6 39 39 H 1.09003 * 109.47349 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.47431 * 299.99484 * 8 7 6 41 41 H 1.09001 * 109.46150 * 307.97790 * 9 4 3 42 42 H 1.09000 * 109.39314 * 61.36271 * 10 9 4 43 43 H 1.08999 * 109.62182 * 301.25088 * 10 9 4 44 44 H 1.08995 * 109.58692 * 185.71805 * 11 10 9 45 45 H 1.09000 * 109.58532 * 65.43452 * 11 10 9 46 46 H 1.08992 * 109.47574 * 300.00049 * 15 13 12 47 47 H 1.09001 * 109.46650 * 60.00338 * 15 13 12 48 48 H 0.97006 * 119.99852 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.58708 * 66.18252 * 25 12 11 50 50 H 1.09004 * 109.58293 * 186.46255 * 25 12 11 51 51 H 1.09002 * 109.49542 * 58.67685 * 26 9 4 52 52 H 1.09001 * 109.52190 * 298.59713 * 26 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4445 0.1263 5 6 4.1365 0.8893 -1.0775 6 6 3.7125 1.7064 -2.2996 7 8 4.2514 3.0262 -2.2006 8 6 3.8312 3.9055 -3.2455 9 6 4.0057 2.7956 0.4097 10 6 3.5566 3.2229 1.8092 11 6 4.0558 4.6439 2.0892 12 7 5.5093 4.6876 1.8793 13 6 6.3287 5.1522 2.8433 14 8 5.8678 5.5397 3.8961 15 6 7.8175 5.1901 2.6130 16 16 8.6381 5.8604 4.0805 17 6 10.3169 5.7936 3.5497 18 1 10.5579 5.4155 2.5672 19 6 11.3295 6.2278 4.3939 20 7 12.5837 6.1774 3.9975 21 14 10.9126 6.8824 6.0930 22 1 10.9174 5.7636 7.0694 23 1 11.9220 7.8947 6.4949 24 1 9.5666 7.5094 6.0653 25 6 6.0527 4.2146 0.5988 26 6 5.5344 2.7971 0.3366 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6022 1.9826 0.8395 33 1 1.7551 1.9286 -0.9331 34 1 5.2204 0.9316 -0.9705 35 1 3.8243 -0.1469 -1.2071 36 1 4.0873 1.2279 -3.2045 37 1 2.6246 1.7603 -2.3410 38 1 2.7454 3.9993 -3.2268 39 1 4.2828 4.8866 -3.0985 40 1 4.1444 3.5017 -4.2083 41 1 3.6063 3.4932 -0.3264 42 1 3.9740 2.5386 2.5479 43 1 2.4684 3.2016 1.8669 44 1 3.8271 4.9151 3.1198 45 1 3.5675 5.3431 1.4104 46 1 8.1815 4.1806 2.4220 47 1 8.0361 5.8238 1.7536 48 1 13.2914 6.4805 4.5876 49 1 5.7270 4.8769 -0.2033 50 1 7.1417 4.2050 0.6452 51 1 5.8516 2.4712 -0.6540 52 1 5.9357 2.1181 1.0889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716716702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:06 Heat of formation + Delta-G solvation = -95.650975 kcal Electronic energy + Delta-G solvation = -29382.159296 eV Core-core repulsion = 25507.346120 eV Total energy + Delta-G solvation = -3874.813177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40526 -40.23628 -38.23994 -37.22334 -34.67096 -34.45979 -33.25692 -31.94706 -30.83902 -29.59321 -27.85587 -27.20287 -26.84536 -25.05613 -24.19018 -23.20455 -21.87859 -20.80632 -20.27762 -19.49169 -18.31402 -17.76508 -17.42526 -17.16254 -16.84346 -16.63055 -16.33602 -16.08196 -15.85944 -15.71935 -15.28421 -15.02431 -14.94105 -14.74055 -14.57871 -14.12100 -14.07466 -13.57294 -13.54148 -13.34416 -13.32241 -13.17609 -13.01370 -12.80234 -12.75606 -12.62499 -12.55206 -12.32039 -12.22226 -11.96542 -11.85483 -11.85003 -11.52051 -11.33368 -11.22119 -11.16739 -10.86198 -10.51240 -10.43153 -9.70248 -9.06671 -8.99915 -8.51051 -6.21978 0.97791 1.31632 1.46522 1.53009 1.55078 2.09531 2.25687 2.68877 2.80469 2.86994 3.03679 3.53762 3.77150 3.91898 4.03422 4.13700 4.15500 4.17904 4.18813 4.26284 4.31787 4.35683 4.40391 4.44810 4.50122 4.53679 4.54289 4.58655 4.61972 4.69213 4.77322 4.82129 4.85882 4.87434 4.90813 4.95802 4.99780 5.09471 5.17399 5.22943 5.25681 5.34951 5.42992 5.51421 5.58317 5.71468 6.11773 6.20612 6.22315 6.28023 6.31526 6.94055 7.09901 8.61283 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.002376 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.683312 B =11781.633568 C =12430.896246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.049 3.951 4 N -0.539 5.539 5 C 0.047 3.953 6 C 0.021 3.979 7 O -0.395 6.395 8 C 0.026 3.974 9 C 0.099 3.901 10 C -0.118 4.118 11 C 0.115 3.885 12 N -0.603 5.603 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.105 4.105 16 S -0.177 6.177 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.108 3.892 26 C -0.116 4.116 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.277 0.723 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.164 -12.029 -17.978 33.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.079 4.079 4 N -0.262 5.262 5 C -0.081 4.081 6 C -0.057 4.057 7 O -0.314 6.314 8 C -0.070 4.070 9 C -0.009 4.009 10 C -0.157 4.157 11 C -0.008 4.008 12 N -0.337 5.337 13 C 0.321 3.679 14 O -0.444 6.444 15 C -0.255 4.255 16 S 0.050 5.950 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.162 1.162 25 C -0.014 4.014 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.415 -11.686 -15.872 32.958 hybrid contribution 0.746 0.254 -1.461 1.660 sum -25.669 -11.432 -17.334 33.016 Atomic orbital electron populations 1.21718 0.95051 1.02073 1.01866 1.21477 0.95818 0.95810 1.02270 1.22282 0.87120 0.97762 1.00700 1.62190 1.05913 1.22192 1.35902 1.22483 1.00974 0.98316 0.86282 1.23349 0.98431 0.83952 0.99924 1.88002 1.72166 1.22003 1.49220 1.22814 0.99327 0.94433 0.90458 1.21533 0.94393 0.89701 0.95283 1.21947 1.01385 0.94778 0.97552 1.21637 0.78717 0.97863 1.02552 1.48115 1.07160 1.62641 1.15779 1.20007 0.87926 0.76650 0.83316 1.90661 1.77430 1.49046 1.27294 1.23264 0.94282 1.05780 1.02215 1.84705 1.02954 1.83904 1.23439 1.22435 0.90911 1.49108 1.05001 0.91936 1.25553 0.93979 0.94388 1.02061 1.70016 0.99974 1.46630 1.38760 0.85871 0.80673 0.79991 0.79859 1.18736 1.18201 1.16165 1.21929 0.99492 0.96091 0.83914 1.21956 0.95396 0.95250 1.02779 0.92172 0.92851 0.92496 0.91676 0.92162 0.91011 0.94102 0.89793 0.88090 0.92162 0.92493 0.93878 0.89357 0.93564 0.91373 0.92873 0.89440 0.90896 0.89902 0.87394 0.87126 0.91359 0.89452 0.89723 0.88454 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.22 5.77 30.60 0.18 -1.04 16 3 C 0.05 0.59 4.59 86.30 0.40 0.99 16 4 N -0.54 -8.01 4.56 -870.76 -3.97 -11.98 16 5 C 0.05 0.57 5.30 86.30 0.46 1.03 16 6 C 0.02 0.22 5.76 71.98 0.41 0.64 16 7 O -0.39 -5.21 6.19 -148.98 -0.92 -6.13 16 8 C 0.03 0.25 11.01 113.37 1.25 1.50 16 9 C 0.10 1.67 1.20 44.95 0.05 1.73 16 10 C -0.12 -2.30 5.38 30.68 0.17 -2.13 16 11 C 0.11 2.70 6.43 86.36 0.56 3.25 16 12 N -0.60 -16.74 2.97 -818.91 -2.44 -19.17 16 13 C 0.53 20.06 7.72 87.66 0.68 20.74 16 14 O -0.57 -25.64 15.28 -3.04 -0.05 -25.69 16 15 C -0.10 -4.21 4.50 71.24 0.32 -3.89 16 16 S -0.18 -9.23 18.55 -56.49 -1.05 -10.28 16 17 C -0.53 -31.24 10.04 67.95 0.68 -30.56 16 18 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 19 C 0.05 2.72 5.50 84.86 0.47 3.18 16 20 N -0.92 -56.30 13.97 21.65 0.30 -55.99 16 21 Si 0.91 45.78 27.74 68.60 1.90 47.69 16 22 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 25 C 0.11 2.33 6.34 86.36 0.55 2.88 16 26 C -0.12 -2.19 4.33 30.67 0.13 -2.06 16 27 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.60 6.89 -2.39 -0.02 0.58 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.94 6.11 -2.39 -0.01 0.93 16 33 H 0.04 0.46 5.74 -2.39 -0.01 0.45 16 34 H 0.08 1.16 5.79 -2.39 -0.01 1.15 16 35 H 0.10 0.98 6.73 -2.39 -0.02 0.96 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.55 5.87 -2.39 -0.01 0.54 16 38 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 41 H 0.07 1.16 6.05 -2.39 -0.01 1.14 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.40 6.36 -2.39 -0.02 1.39 16 44 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.11 4.07 7.69 -2.40 -0.02 4.06 16 47 H 0.11 4.11 7.94 -2.39 -0.02 4.09 16 48 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.08 1.92 5.93 -2.39 -0.01 1.90 16 51 H 0.10 1.66 5.01 -2.39 -0.01 1.65 16 52 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.85 401.16 1.64 -71.21 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.86 Total: 14.70 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 7.01 Total: -4.34 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -6.11 Total: -87.15 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.97 Total: -31.82 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.69 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.05 Total: -10.28 kcal Total: -72.85 1.64 -71.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.444 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds