Wall clock time and date at job start Wed Apr 1 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00176 * 2 1 4 4 H 1.09006 * 109.46843 * 0.02562 * 3 2 1 5 5 C 1.50699 * 109.47504 * 240.00823 * 3 2 1 6 6 O 1.21281 * 119.99673 * 240.00241 * 5 3 2 7 7 N 1.34778 * 120.00347 * 59.99667 * 5 3 2 8 8 C 1.46495 * 119.99938 * 174.95274 * 7 5 3 9 9 C 1.52996 * 109.50095 * 63.62856 * 8 7 5 10 10 O 1.42898 * 109.47220 * 55.53595 * 9 8 7 11 11 C 1.53046 * 109.49659 * 303.52631 * 8 7 5 12 12 C 1.53033 * 109.54009 * 301.41830 * 11 8 7 13 13 C 1.53195 * 109.31375 * 298.63373 * 12 11 8 14 14 N 1.46929 * 108.77316 * 54.63353 * 13 12 11 15 15 C 1.36944 * 120.62605 * 126.37331 * 14 13 12 16 16 H 1.08005 * 119.99285 * 211.86331 * 15 14 13 17 17 C 1.38803 * 120.00177 * 31.86418 * 15 14 13 18 18 N 1.31620 * 120.00179 * 10.26316 * 17 15 14 19 19 Si 1.86803 * 119.99961 * 190.26823 * 17 15 14 20 20 H 1.48496 * 109.47378 * 59.99841 * 19 17 15 21 21 H 1.48503 * 109.47156 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46726 * 299.99752 * 19 17 15 23 23 C 1.46918 * 118.74019 * 306.39034 * 14 13 12 24 24 C 1.50699 * 109.47145 * 120.00201 * 3 2 1 25 25 C 1.38229 * 120.00018 * 240.00066 * 24 3 2 26 26 C 1.38244 * 119.99867 * 180.25516 * 25 24 3 27 27 C 1.38232 * 119.99720 * 359.53468 * 26 25 24 28 28 C 1.38237 * 120.00245 * 0.42577 * 27 26 25 29 29 C 1.38231 * 119.99724 * 359.80410 * 28 27 26 30 30 H 1.07994 * 119.99990 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.99827 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99942 * 180.02562 * 2 1 3 33 33 H 0.96996 * 119.99659 * 354.94801 * 7 5 3 34 34 H 1.09004 * 109.46827 * 175.53824 * 9 8 7 35 35 H 1.08999 * 109.47134 * 295.53248 * 9 8 7 36 36 H 0.96699 * 114.00022 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.45959 * 61.43905 * 11 8 7 38 38 H 1.09005 * 109.45810 * 181.39335 * 11 8 7 39 39 H 1.08996 * 109.49978 * 178.68207 * 12 11 8 40 40 H 1.09001 * 109.52668 * 58.59945 * 12 11 8 41 41 H 1.08996 * 109.58489 * 294.84713 * 13 12 11 42 42 H 1.09004 * 109.58788 * 174.42302 * 13 12 11 43 43 H 0.97004 * 119.99860 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.59044 * 293.82462 * 23 14 13 45 45 H 1.09002 * 109.70322 * 173.46730 * 23 14 13 46 46 H 1.07992 * 120.00373 * 359.97438 * 25 24 3 47 47 H 1.07996 * 120.00274 * 179.72989 * 26 25 24 48 48 H 1.08006 * 120.00191 * 180.21314 * 27 26 25 49 49 H 1.07998 * 120.00020 * 179.78678 * 28 27 26 50 50 H 1.08005 * 120.00397 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9298 1.3850 -1.2305 6 8 4.1324 1.4958 -1.1193 7 7 2.3682 1.3334 -2.4546 8 6 3.1957 1.5218 -3.6487 9 6 4.2223 0.3913 -3.7423 10 8 3.5472 -0.8680 -3.7223 11 6 3.9218 2.8662 -3.5599 12 6 2.8960 3.9946 -3.4329 13 6 2.0021 4.0092 -4.6769 14 7 1.4127 2.6746 -4.8513 15 6 0.0571 2.5207 -4.9704 16 1 -0.4197 1.6269 -4.5960 17 6 -0.7038 3.5134 -5.5722 18 7 -0.1117 4.5032 -6.2062 19 14 -2.5684 3.4445 -5.4822 20 1 -2.9970 3.4761 -4.0608 21 1 -3.1421 4.6119 -6.1988 22 1 -3.0485 2.1904 -6.1162 23 6 2.3052 1.5084 -4.8952 24 6 2.9300 1.3848 1.2304 25 6 2.7456 2.4089 2.1403 26 6 3.5440 2.4851 3.2664 27 6 4.5202 1.5316 3.4872 28 6 4.7040 0.5070 2.5777 29 6 3.9089 0.4336 1.4493 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8501 -0.9354 -0.0004 33 1 1.4162 1.1713 -2.5449 34 1 4.7848 0.4874 -4.6710 35 1 4.9062 0.4505 -2.8956 36 1 4.1377 -1.6317 -3.7781 37 1 4.5750 2.8692 -2.6873 38 1 4.5180 3.0169 -4.4600 39 1 3.4143 4.9495 -3.3462 40 1 2.2830 3.8316 -2.5464 41 1 2.5992 4.2623 -5.5529 42 1 1.2084 4.7452 -4.5480 43 1 -0.6436 5.1971 -6.6265 44 1 2.9271 1.5576 -5.7891 45 1 1.7135 0.5932 -4.9117 46 1 1.9810 3.1521 1.9693 47 1 3.4029 3.2876 3.9751 48 1 5.1416 1.5891 4.3687 49 1 5.4690 -0.2359 2.7485 50 1 4.0527 -0.3667 0.7384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724639865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:06 Heat of formation + Delta-G solvation = -16.684324 kcal Electronic energy + Delta-G solvation = -31945.539997 eV Core-core repulsion = 27938.707120 eV Total energy + Delta-G solvation = -4006.832877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.41935 -39.10595 -37.39192 -36.01986 -35.02257 -33.82628 -32.12892 -31.15905 -30.82863 -30.48069 -29.86708 -26.90932 -25.42657 -25.04516 -22.68317 -22.31622 -21.99648 -21.06027 -20.43027 -19.45720 -18.63636 -17.10352 -16.91820 -16.85190 -16.69450 -15.52441 -15.24196 -15.02165 -14.77789 -14.60339 -14.47838 -14.02595 -13.90501 -13.52374 -13.36526 -13.22257 -12.95281 -12.87225 -12.66806 -12.50695 -12.28706 -12.14528 -11.87370 -11.50697 -11.39798 -11.16287 -11.05887 -10.99721 -10.84161 -10.75944 -10.43603 -10.20239 -10.11741 -9.85821 -9.77680 -9.61863 -9.42710 -8.95255 -8.77789 -8.66145 -8.49858 -8.39138 -6.64411 -5.81218 -3.30864 1.36169 1.47577 2.23517 3.05707 3.35039 3.40955 3.41117 3.57669 3.93326 4.44327 4.52853 4.75900 4.76619 4.96402 5.03297 5.11205 5.14412 5.17837 5.35284 5.37573 5.47400 5.54547 5.59253 5.62351 5.68311 5.69992 5.81265 5.87939 5.96533 6.01258 6.06269 6.09045 6.31636 6.42325 6.47136 6.51656 6.53265 6.55575 6.61766 6.66967 6.71538 6.72581 6.82275 6.91475 7.03684 7.15333 7.40178 7.68202 7.75407 7.87209 8.11911 8.43978 8.70846 9.18869 9.79357 10.38145 11.26281 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003723 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.394317 B = 7518.788617 C = 8187.858510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.044 4.044 4 H 0.105 0.895 5 C 0.526 3.474 6 O -0.545 6.545 7 N -0.683 5.683 8 C 0.167 3.833 9 C 0.067 3.933 10 O -0.564 6.564 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.256 4.256 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.148 3.852 24 C -0.052 4.052 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.081 4.081 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.369 0.631 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -7.852 14.528 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.065 4.065 4 H 0.123 0.877 5 C 0.311 3.689 6 O -0.423 6.423 7 N -0.332 5.332 8 C 0.079 3.921 9 C -0.012 4.012 10 O -0.368 6.368 11 C -0.159 4.159 12 C -0.175 4.175 13 C 0.046 3.954 14 N -0.310 5.310 15 C -0.385 4.385 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.021 3.979 24 C -0.053 4.053 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.099 4.099 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.241 0.759 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.214 0.786 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.583 -7.196 14.496 17.872 hybrid contribution -0.862 -0.308 -0.228 0.943 sum 6.721 -7.504 14.268 17.466 Atomic orbital electron populations 1.23936 0.95537 1.02454 0.99189 1.22541 0.95713 0.96565 1.01409 1.19520 0.96859 0.98382 0.91769 0.87727 1.20036 0.88343 0.76247 0.84251 1.90602 1.14646 1.50438 1.86643 1.45703 1.12524 1.70665 1.04269 1.20961 0.91229 0.92582 0.87291 1.22652 0.94864 0.83663 1.00005 1.86514 1.37598 1.15220 1.97450 1.21749 0.98339 0.93833 1.01996 1.22104 0.97686 0.96066 1.01661 1.20817 0.95081 0.88244 0.91291 1.43990 1.02227 1.00630 1.84151 1.19084 0.82090 1.05047 1.32323 0.91885 1.25163 0.98096 0.98815 0.97038 1.69971 1.34200 1.13707 1.36716 0.86367 0.85540 0.77111 0.77658 1.20968 1.21666 1.20851 1.21088 0.92629 0.92402 0.91763 1.19228 0.96286 0.95435 0.94323 1.21020 0.99819 0.97709 0.94492 1.21034 0.96385 0.99104 0.97716 1.21086 0.98491 0.95287 0.99392 1.21076 0.99619 0.98772 0.94805 1.20881 0.94312 0.98383 0.96309 0.87899 0.88068 0.86903 0.75905 0.93773 0.92074 0.78630 0.91003 0.92156 0.93397 0.92963 0.96508 0.89493 0.93535 0.95250 0.91596 0.86209 0.86298 0.86498 0.86408 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 14.32 29.01 0.42 -1.52 16 2 C -0.14 -1.74 8.12 -36.03 -0.29 -2.04 16 3 C -0.04 -0.60 2.68 -94.08 -0.25 -0.85 16 4 H 0.10 1.38 7.52 -51.93 -0.39 0.99 16 5 C 0.53 8.54 6.29 -10.99 -0.07 8.47 16 6 O -0.54 -9.90 11.42 5.56 0.06 -9.84 16 7 N -0.68 -11.58 3.90 -47.50 -0.19 -11.77 16 8 C 0.17 2.97 0.45 -131.70 -0.06 2.91 16 9 C 0.07 1.05 5.71 37.16 0.21 1.26 16 10 O -0.56 -8.26 13.06 -35.23 -0.46 -8.72 16 11 C -0.12 -2.20 4.42 -26.69 -0.12 -2.32 16 12 C -0.14 -2.68 5.93 -26.61 -0.16 -2.84 16 13 C 0.17 4.01 5.25 -3.71 -0.02 3.99 16 14 N -0.59 -13.97 2.90 -172.31 -0.50 -14.47 16 15 C -0.26 -6.64 9.58 -15.06 -0.14 -6.79 16 16 H 0.06 1.60 7.85 -52.48 -0.41 1.18 16 17 C 0.01 0.21 5.05 -17.43 -0.09 0.13 16 18 N -0.90 -25.45 11.06 55.49 0.61 -24.84 16 19 Si 0.90 21.02 29.57 -169.99 -5.03 15.99 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.15 3.05 5.05 -3.71 -0.02 3.03 16 24 C -0.05 -0.71 4.39 -104.63 -0.46 -1.16 16 25 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 26 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 27 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 28 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 29 C -0.08 -1.07 8.03 -39.58 -0.32 -1.38 16 30 H 0.10 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.10 1.10 7.83 -52.49 -0.41 0.69 16 32 H 0.11 1.33 8.02 -52.48 -0.42 0.91 16 33 H 0.41 7.15 8.29 -40.82 -0.34 6.81 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.00 6.40 -51.93 -0.33 0.66 16 36 H 0.37 3.66 9.12 45.56 0.42 4.08 16 37 H 0.07 1.34 6.14 -51.93 -0.32 1.02 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 1.06 7.42 -51.93 -0.39 0.67 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.28 6.13 -51.93 -0.32 1.97 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.39 7.76 -51.93 -0.40 0.99 16 46 H 0.12 1.32 7.94 -52.49 -0.42 0.90 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 49 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 50 H 0.12 1.55 7.96 -52.48 -0.42 1.14 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -30.43 397.95 -9.53 -39.96 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -7.09 Total: 13.96 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.94 Total: -6.28 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.07 Total: -51.08 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.40 Total: -18.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.43 -9.53 -39.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724639865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.276 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds