Wall clock time and date at job start Wed Apr 1 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00176 * 2 1 4 4 H 1.09006 * 109.46843 * 0.02562 * 3 2 1 5 5 C 1.50699 * 109.47504 * 240.00823 * 3 2 1 6 6 O 1.21281 * 119.99673 * 240.00241 * 5 3 2 7 7 N 1.34778 * 120.00347 * 59.99667 * 5 3 2 8 8 C 1.46495 * 119.99938 * 174.95274 * 7 5 3 9 9 C 1.52996 * 109.50095 * 63.62856 * 8 7 5 10 10 O 1.42898 * 109.47220 * 55.53595 * 9 8 7 11 11 C 1.53046 * 109.49659 * 303.52631 * 8 7 5 12 12 C 1.53033 * 109.54009 * 301.41830 * 11 8 7 13 13 C 1.53195 * 109.31375 * 298.63373 * 12 11 8 14 14 N 1.46929 * 108.77316 * 54.63353 * 13 12 11 15 15 C 1.36944 * 120.62605 * 126.37331 * 14 13 12 16 16 H 1.08005 * 119.99285 * 211.86331 * 15 14 13 17 17 C 1.38803 * 120.00177 * 31.86418 * 15 14 13 18 18 N 1.31620 * 120.00179 * 10.26316 * 17 15 14 19 19 Si 1.86803 * 119.99961 * 190.26823 * 17 15 14 20 20 H 1.48496 * 109.47378 * 59.99841 * 19 17 15 21 21 H 1.48503 * 109.47156 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46726 * 299.99752 * 19 17 15 23 23 C 1.46918 * 118.74019 * 306.39034 * 14 13 12 24 24 C 1.50699 * 109.47145 * 120.00201 * 3 2 1 25 25 C 1.38229 * 120.00018 * 240.00066 * 24 3 2 26 26 C 1.38244 * 119.99867 * 180.25516 * 25 24 3 27 27 C 1.38232 * 119.99720 * 359.53468 * 26 25 24 28 28 C 1.38237 * 120.00245 * 0.42577 * 27 26 25 29 29 C 1.38231 * 119.99724 * 359.80410 * 28 27 26 30 30 H 1.07994 * 119.99990 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.99827 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99942 * 180.02562 * 2 1 3 33 33 H 0.96996 * 119.99659 * 354.94801 * 7 5 3 34 34 H 1.09004 * 109.46827 * 175.53824 * 9 8 7 35 35 H 1.08999 * 109.47134 * 295.53248 * 9 8 7 36 36 H 0.96699 * 114.00022 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.45959 * 61.43905 * 11 8 7 38 38 H 1.09005 * 109.45810 * 181.39335 * 11 8 7 39 39 H 1.08996 * 109.49978 * 178.68207 * 12 11 8 40 40 H 1.09001 * 109.52668 * 58.59945 * 12 11 8 41 41 H 1.08996 * 109.58489 * 294.84713 * 13 12 11 42 42 H 1.09004 * 109.58788 * 174.42302 * 13 12 11 43 43 H 0.97004 * 119.99860 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.59044 * 293.82462 * 23 14 13 45 45 H 1.09002 * 109.70322 * 173.46730 * 23 14 13 46 46 H 1.07992 * 120.00373 * 359.97438 * 25 24 3 47 47 H 1.07996 * 120.00274 * 179.72989 * 26 25 24 48 48 H 1.08006 * 120.00191 * 180.21314 * 27 26 25 49 49 H 1.07998 * 120.00020 * 179.78678 * 28 27 26 50 50 H 1.08005 * 120.00397 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9298 1.3850 -1.2305 6 8 4.1324 1.4958 -1.1193 7 7 2.3682 1.3334 -2.4546 8 6 3.1957 1.5218 -3.6487 9 6 4.2223 0.3913 -3.7423 10 8 3.5472 -0.8680 -3.7223 11 6 3.9218 2.8662 -3.5599 12 6 2.8960 3.9946 -3.4329 13 6 2.0021 4.0092 -4.6769 14 7 1.4127 2.6746 -4.8513 15 6 0.0571 2.5207 -4.9704 16 1 -0.4197 1.6269 -4.5960 17 6 -0.7038 3.5134 -5.5722 18 7 -0.1117 4.5032 -6.2062 19 14 -2.5684 3.4445 -5.4822 20 1 -2.9970 3.4761 -4.0608 21 1 -3.1421 4.6119 -6.1988 22 1 -3.0485 2.1904 -6.1162 23 6 2.3052 1.5084 -4.8952 24 6 2.9300 1.3848 1.2304 25 6 2.7456 2.4089 2.1403 26 6 3.5440 2.4851 3.2664 27 6 4.5202 1.5316 3.4872 28 6 4.7040 0.5070 2.5777 29 6 3.9089 0.4336 1.4493 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8501 -0.9354 -0.0004 33 1 1.4162 1.1713 -2.5449 34 1 4.7848 0.4874 -4.6710 35 1 4.9062 0.4505 -2.8956 36 1 4.1377 -1.6317 -3.7781 37 1 4.5750 2.8692 -2.6873 38 1 4.5180 3.0169 -4.4600 39 1 3.4143 4.9495 -3.3462 40 1 2.2830 3.8316 -2.5464 41 1 2.5992 4.2623 -5.5529 42 1 1.2084 4.7452 -4.5480 43 1 -0.6436 5.1971 -6.6265 44 1 2.9271 1.5576 -5.7891 45 1 1.7135 0.5932 -4.9117 46 1 1.9810 3.1521 1.9693 47 1 3.4029 3.2876 3.9751 48 1 5.1416 1.5891 4.3687 49 1 5.4690 -0.2359 2.7485 50 1 4.0527 -0.3667 0.7384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724639865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:05 Heat of formation + Delta-G solvation = -34.966915 kcal Electronic energy + Delta-G solvation = -31946.332790 eV Core-core repulsion = 27938.707120 eV Total energy + Delta-G solvation = -4007.625670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.68617 -40.20829 -38.73948 -37.37605 -36.05342 -35.44832 -33.76157 -32.32796 -32.05983 -31.70956 -31.36510 -27.94169 -27.28281 -26.57641 -23.98292 -23.58316 -23.21235 -22.32689 -21.79676 -20.59133 -20.04968 -18.68193 -18.26960 -18.06614 -17.81474 -16.89385 -16.64912 -16.34139 -16.01676 -15.85851 -15.70238 -15.57953 -15.01998 -14.92286 -14.69083 -14.48563 -14.29886 -14.16637 -14.06187 -13.83108 -13.45792 -13.38794 -13.19026 -13.09055 -12.86626 -12.77119 -12.48246 -12.32147 -12.23395 -11.97469 -11.94894 -11.79093 -11.73992 -11.48157 -11.26592 -11.06099 -10.71070 -10.51610 -10.09339 -9.78396 -9.70500 -9.57094 -8.60316 -7.83607 -5.35668 0.45592 0.57808 1.31017 1.50383 1.51056 1.57557 1.80900 2.34550 2.52446 2.98060 3.31989 3.33523 3.66368 3.73545 3.79080 3.92930 4.03027 4.09509 4.19686 4.22120 4.22661 4.26756 4.32155 4.36943 4.54144 4.55538 4.62778 4.69041 4.76777 4.80311 4.88525 4.91053 5.00633 5.01666 5.06720 5.12790 5.18901 5.20827 5.27656 5.54126 5.59793 5.64625 5.66206 5.66537 5.70449 5.72748 5.77969 5.81117 6.16682 6.42836 6.77473 6.93861 7.17790 7.40114 7.84893 8.39847 9.21979 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003723 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.394317 B = 7518.788617 C = 8187.858510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.037 4.037 4 H 0.105 0.895 5 C 0.527 3.473 6 O -0.564 6.564 7 N -0.684 5.684 8 C 0.171 3.829 9 C 0.078 3.922 10 O -0.576 6.576 11 C -0.114 4.114 12 C -0.123 4.123 13 C 0.182 3.818 14 N -0.599 5.599 15 C -0.258 4.258 16 H 0.069 0.931 17 C -0.044 4.044 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.277 1.277 23 C 0.154 3.846 24 C -0.069 4.069 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.132 4.132 29 C -0.098 4.098 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.402 0.598 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.391 0.609 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.046 0.954 41 H -0.004 1.004 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.137 0.863 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -8.933 16.360 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.058 4.058 4 H 0.123 0.877 5 C 0.313 3.687 6 O -0.444 6.444 7 N -0.333 5.333 8 C 0.083 3.917 9 C -0.001 4.001 10 O -0.383 6.383 11 C -0.152 4.152 12 C -0.162 4.162 13 C 0.056 3.944 14 N -0.322 5.322 15 C -0.388 4.388 16 H 0.087 0.913 17 C -0.240 4.240 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.203 1.203 23 C 0.028 3.972 24 C -0.070 4.070 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.149 4.149 29 C -0.116 4.116 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.237 0.763 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.146 0.854 47 H 0.161 0.839 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.854 -8.321 16.348 19.954 hybrid contribution -0.899 -0.020 -0.772 1.185 sum 6.955 -8.341 15.575 18.988 Atomic orbital electron populations 1.24112 0.95225 1.03332 0.97546 1.22481 0.96009 0.95925 1.02870 1.19452 0.96541 0.99211 0.90621 0.87655 1.20444 0.88380 0.75285 0.84550 1.90583 1.15611 1.51239 1.86930 1.45690 1.12179 1.70978 1.04428 1.20803 0.91108 0.93455 0.86335 1.22431 0.93767 0.83450 1.00471 1.86458 1.38649 1.15701 1.97451 1.21675 0.97797 0.93468 1.02276 1.21916 0.97401 0.97613 0.99252 1.20565 0.94216 0.87559 0.92044 1.44139 1.02200 1.01519 1.84352 1.19414 0.83286 1.04902 1.31242 0.91327 1.25871 1.02055 0.98800 0.97275 1.70138 1.35363 1.14445 1.38131 0.85379 0.80757 0.76686 0.77804 1.20006 1.22537 1.20270 1.21082 0.92285 0.90814 0.93061 1.19317 0.96821 0.96222 0.94615 1.21250 1.00591 0.97761 0.95016 1.21381 0.95869 0.99735 0.97585 1.21456 0.98418 0.94553 0.99971 1.21374 0.99679 0.99519 0.94377 1.20945 0.95090 0.98487 0.97066 0.86249 0.87936 0.86772 0.76327 0.92427 0.92514 0.76079 0.90904 0.91533 0.92071 0.93555 0.98627 0.92647 0.94228 0.95728 0.92135 0.85427 0.83948 0.83766 0.84519 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.15 -3.61 8.12 25.64 0.21 -3.40 16 3 C -0.04 -0.99 2.68 -13.03 -0.03 -1.02 16 4 H 0.11 2.73 7.52 -2.38 -0.02 2.72 16 5 C 0.53 16.80 6.29 87.66 0.55 17.35 16 6 O -0.56 -20.13 11.42 -3.03 -0.03 -20.16 16 7 N -0.68 -22.82 3.90 -422.57 -1.65 -24.47 16 8 C 0.17 5.93 0.45 3.68 0.00 5.94 16 9 C 0.08 2.32 5.71 71.98 0.41 2.73 16 10 O -0.58 -15.85 13.06 -148.98 -1.95 -17.80 16 11 C -0.11 -4.06 4.42 30.62 0.14 -3.92 16 12 C -0.12 -4.83 5.93 30.67 0.18 -4.65 16 13 C 0.18 8.70 5.25 86.36 0.45 9.15 16 14 N -0.60 -28.77 2.90 -699.08 -2.03 -30.80 16 15 C -0.26 -13.47 9.58 84.03 0.80 -12.67 16 16 H 0.07 3.44 7.85 -2.91 -0.02 3.42 16 17 C -0.04 -2.39 5.05 84.86 0.43 -1.96 16 18 N -0.94 -54.06 11.06 21.65 0.24 -53.82 16 19 Si 0.97 43.45 29.57 68.60 2.03 45.48 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.15 6.29 5.05 86.37 0.44 6.72 16 24 C -0.07 -1.82 4.39 -19.87 -0.09 -1.91 16 25 C -0.13 -3.04 9.67 22.27 0.22 -2.82 16 26 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 27 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 28 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 29 C -0.10 -2.51 8.03 22.27 0.18 -2.33 16 30 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.10 2.09 7.83 -2.91 -0.02 2.07 16 32 H 0.11 2.61 8.02 -2.91 -0.02 2.58 16 33 H 0.40 13.99 8.29 -92.71 -0.77 13.22 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.77 6.40 -2.39 -0.02 1.75 16 36 H 0.39 6.92 9.12 -74.06 -0.68 6.24 16 37 H 0.07 2.64 6.14 -2.39 -0.01 2.62 16 38 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.87 7.42 -2.39 -0.02 1.85 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.06 3.00 6.13 -2.38 -0.01 2.99 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 2.52 7.76 -2.39 -0.02 2.50 16 46 H 0.13 2.69 7.94 -2.91 -0.02 2.66 16 47 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 48 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 49 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 50 H 0.11 2.88 7.96 -2.91 -0.02 2.86 16 Total: -1.00 -65.33 397.95 1.64 -63.69 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -0.50 Total: 40.32 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.53 Total: -2.44 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -3.44 Total: -109.09 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.98 Total: -37.96 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.33 1.64 -63.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724639865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.718 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds